7ONB: U2 5' module of the A3'-SSA complex
Structure of the U2 5' module of the A3'-SSA complex. Determined by electron microscopy at 3.1 Å resolution. Released 4 Aug 2021.
- Method
- Electron microscopy
- Resolution
- 3.1 Å
- Organisms
- Homo sapiens, unidentified adenovirus
- Chains
- 11
- Atoms
- 20,140
- Mol. weight
- 693.83 kDa
- Ligands
- SJT, ZN
- Released
- 4 Aug 2021
Explore 7ONB in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
7ONB contains 118 α-helices and 126 β-strands across 9 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain A: 20 helices, 99 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 3-9 | 7 | 1 |
| β-strand | 16-20 | 5 | 2 |
| β-strand | 29-33 | 5 | 2 |
| β-strand | 37-43 | 7 | 2 |
| β-strand | 50-57 | 8 | 2 |
| β-strand | 62-68 | 7 | 3 |
| β-strand | 77-82 | 6 | 3 |
| β-strand | 86-93 | 8 | 3 |
| β-strand | 98-106 | 9 | 3 |
| β-strand | 120-123 | 4 | 4 |
| β-strand | 129-133 | 5 | 4 |
| β-strand | 136 | 1 | 5 |
| β-strand | 139-143 | 5 | 4 |
| β-strand | 144-145 | 2 | 6 |
| β-strand | 153-154 | 2 | 6 |
| α-helix | 156-157 | 2 | |
| β-strand | 158-159 | 2 | 4 |
| β-strand | 166-173 | 8 | 5 |
| β-strand | 181-187 | 7 | 5 |
| α-helix | 190-193 | 4 | |
| α-helix | 199-203 | 5 | |
| β-strand | 207-214 | 8 | 5 |
| β-strand | 219-227 | 9 | 5 |
| β-strand | 232-237 | 6 | 7 |
| α-helix | 238-239 | 2 | |
| β-strand | 248-252 | 5 | 7 |
| β-strand | 255-259 | 5 | 7 |
| α-helix | 265-266 | 2 | |
| β-strand | 267-270 | 4 | 7 |
| α-helix | 271-272 | 2 | |
| β-strand | 273-274 | 2 | 8 |
| β-strand | 289-293 | 5 | 9 |
| β-strand | 300-304 | 5 | 9 |
| β-strand | 309-316 | 8 | 9 |
| β-strand | 324-332 | 9 | 9 |
| β-strand | 336-341 | 6 | 10 |
| β-strand | 346-351 | 6 | 10 |
| β-strand | 356-361 | 6 | 10 |
| β-strand | 372-374 | 3 | 9 |
| β-strand | 386-387 | 2 | 8 |
| β-strand | 395-401 | 7 | 10 |
| α-helix | 405-406 | 2 | |
| β-strand | 407-413 | 7 | 11 |
| β-strand | 422-427 | 6 | 11 |
| α-helix | 430-432 | 3 | |
| β-strand | 434-440 | 7 | 11 |
| β-strand | 442-443 | 2 | 12 |
| β-strand | 444-450 | 7 | 13 |
| β-strand | 474 | 1 | 14 |
| β-strand | 477 | 1 | 15 |
| β-strand | 482 | 1 | 15 |
| β-strand | 485 | 1 | 14 |
| β-strand | 486-487 | 2 | 16 |
| β-strand | 491-492 | 2 | 16 |
| β-strand | 509 | 1 | 17 |
| β-strand | 515-519 | 5 | 17 |
| β-strand | 524-528 | 5 | 17 |
| β-strand | 535-536 | 2 | 17 |
| α-helix | 537-538 | 2 | |
| β-strand | 546-549 | 4 | 18 |
| β-strand | 554-557 | 4 | 18 |
| β-strand | 563-566 | 4 | 18 |
| β-strand | 587-592 | 6 | 19 |
| β-strand | 605-609 | 5 | 19 |
| β-strand | 613-617 | 5 | 19 |
| α-helix | 621-623 | 3 | |
| β-strand | 629-631 | 3 | 19 |
| β-strand | 637-643 | 7 | 20 |
| β-strand | 664-669 | 6 | 20 |
| β-strand | 673-678 | 6 | 20 |
| β-strand | 687-690 | 4 | 20 |
| β-strand | 700-706 | 7 | 21 |
| β-strand | 709-715 | 7 | 21 |
| β-strand | 720-724 | 5 | 21 |
| β-strand | 729-732 | 4 | 21 |
| β-strand | 734-735 | 2 | 12 |
| β-strand | 741-745 | 5 | 13 |
| β-strand | 753-758 | 6 | 13 |
| β-strand | 761-767 | 7 | 13 |
| β-strand | 774-780 | 7 | 11 |
| β-strand | 785-790 | 6 | 22 |
| β-strand | 797-804 | 8 | 22 |
| α-helix | 809-827 | 19 | |
| α-helix | 833-844 | 12 | |
| α-helix | 849-852 | 4 | |
| β-strand | 862-869 | 8 | 22 |
| β-strand | 876-881 | 6 | 22 |
| β-strand | 886-894 | 9 | 23 |
| β-strand | 904-911 | 8 | 23 |
| β-strand | 914 | 1 | 24 |
| β-strand | 919 | 1 | 24 |
| β-strand | 924-928 | 5 | 23 |
| α-helix | 931-934 | 4 | |
| β-strand | 936 | 1 | 25 |
| β-strand | 939-944 | 6 | 23 |
| β-strand | 949-955 | 7 | 26 |
| β-strand | 958-963 | 6 | 26 |
| β-strand | 966-972 | 7 | 26 |
| β-strand | 977-983 | 7 | 26 |
| β-strand | 990-996 | 7 | 27 |
| β-strand | 999-1004 | 6 | 27 |
| β-strand | 1009-1015 | 7 | 27 |
| β-strand | 1020-1027 | 8 | 27 |
| β-strand | 1036-1038 | 3 | 28 |
| β-strand | 1043-1047 | 5 | 28 |
| β-strand | 1052-1057 | 6 | 28 |
| α-helix | 1058-1059 | 2 | |
| β-strand | 1087-1089 | 3 | 27 |
| β-strand | 1090-1096 | 7 | 28 |
| β-strand | 1101-1107 | 7 | 1 |
| β-strand | 1116-1121 | 6 | 1 |
| β-strand | 1126-1131 | 6 | 1 |
| α-helix | 1135-1150 | 16 | |
| α-helix | 1160-1163 | 4 | |
| β-strand | 1171 | 1 | 28 |
| β-strand | 1173-1175 | 3 | 1 |
| α-helix | 1176-1179 | 4 | |
| α-helix | 1187-1194 | 8 | |
| α-helix | 1201-1213 | 13 | |
Chain B: 4 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 28-45 | 18 | |
| α-helix | 47-56 | 10 | |
| α-helix | 61-71 | 11 | |
| α-helix | 79-81 | 3 | |
Chain C: 63 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 489-506 | 18 | |
| α-helix | 511-521 | 11 | |
| α-helix | 523-526 | 4 | |
| α-helix | 528-539 | 12 | |
| α-helix | 546-562 | 17 | |
| α-helix | 565-570 | 6 | |
| α-helix | 571-578 | 8 | |
| α-helix | 579-583 | 5 | |
| α-helix | 587-604 | 18 | |
| α-helix | 606-613 | 8 | |
| α-helix | 614-616 | 3 | |
| α-helix | 622-639 | 18 | |
| α-helix | 641-652 | 12 | |
| α-helix | 658-675 | 18 | |
| α-helix | 676-682 | 7 | |
| α-helix | 683-690 | 8 | |
| α-helix | 691-695 | 5 | |
| α-helix | 699-716 | 18 | |
| α-helix | 722-724 | 3 | |
| α-helix | 725-734 | 10 | |
| α-helix | 740-753 | 14 | |
| α-helix | 754-756 | 3 | |
| α-helix | 759-776 | 18 | |
| α-helix | 782-796 | 15 | |
| α-helix | 803-805 | 3 | |
| α-helix | 806-810 | 5 | |
| α-helix | 811-818 | 8 | |
| α-helix | 823-825 | 3 | |
| α-helix | 827-844 | 18 | |
| α-helix | 846-850 | 5 | |
| α-helix | 855-858 | 4 | |
| α-helix | 862-879 | 18 | |
| α-helix | 886-901 | 16 | |
| α-helix | 908-921 | 14 | |
| α-helix | 922-928 | 7 | |
| α-helix | 929-940 | 12 | |
| α-helix | 945-964 | 20 | |
| α-helix | 968-980 | 13 | |
| α-helix | 987-1004 | 18 | |
| α-helix | 1013-1020 | 8 | |
| α-helix | 1021-1025 | 5 | |
| α-helix | 1029-1045 | 17 | |
| α-helix | 1047-1049 | 3 | |
| α-helix | 1052-1062 | 11 | |
| α-helix | 1063-1067 | 5 | |
| α-helix | 1071-1087 | 17 | |
| α-helix | 1090-1104 | 15 | |
| α-helix | 1108-1122 | 15 | |
| α-helix | 1125-1127 | 3 | |
| α-helix | 1129-1134 | 6 | |
| α-helix | 1135-1137 | 3 | |
| α-helix | 1142-1158 | 17 | |
| α-helix | 1159-1164 | 6 | |
| α-helix | 1166-1177 | 12 | |
| α-helix | 1182-1198 | 17 | |
| α-helix | 1205-1215 | 11 | |
| α-helix | 1216-1220 | 5 | |
| α-helix | 1224-1241 | 18 | |
| α-helix | 1243-1250 | 8 | |
| α-helix | 1253-1255 | 3 | |
| α-helix | 1259-1275 | 17 | |
| α-helix | 1279-1282 | 4 | |
| α-helix | 1299-1301 | 3 | |
Chain D: 4 helices, 12 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 10 | 1 | 29 |
| β-strand | 18-19 | 2 | 30 |
| α-helix | 20 | 1 | |
| β-strand | 21-22 | 2 | 31 |
| β-strand | 30 | 1 | 32 |
| β-strand | 39-42 | 4 | 32 |
| β-strand | 44-45 | 2 | 30 |
| α-helix | 48-50 | 3 | |
| α-helix | 52-54 | 3 | |
| β-strand | 57 | 1 | 33 |
| β-strand | 58 | 1 | 31 |
| β-strand | 64 | 1 | 33 |
| β-strand | 67-68 | 2 | 31 |
| β-strand | 70-72 | 3 | 32 |
| α-helix | 73-77 | 5 | |
| β-strand | 88 | 1 | 29 |
Chain F: 1 helix, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 165-179 | 15 | |
Chain I: 14 helices, 2 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 459-461 | 3 | |
| α-helix | 462-468 | 7 | |
| α-helix | 478-481 | 4 | |
| α-helix | 485-492 | 8 | |
| α-helix | 498-501 | 4 | |
| α-helix | 502-504 | 3 | |
| α-helix | 523-525 | 3 | |
| α-helix | 526-529 | 4 | |
| α-helix | 568-576 | 9 | |
| α-helix | 580-582 | 3 | |
| α-helix | 611-616 | 6 | |
| α-helix | 632-638 | 7 | |
| α-helix | 648-650 | 3 | |
| β-strand | 651 | 1 | 34 |
| β-strand | 655 | 1 | 34 |
| α-helix | 681-682 | 2 | |
Chain K: 3 helices, 6 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 14-18 | 5 | 38 |
| α-helix | 26-32 | 7 | |
| β-strand | 39-43 | 5 | 38 |
| β-strand | 56-61 | 6 | 38 |
| α-helix | 64-73 | 10 | |
| α-helix | 74-76 | 3 | |
| β-strand | 78-79 | 2 | 39 |
| β-strand | 82-83 | 2 | 39 |
| β-strand | 85-87 | 3 | 38 |
Chain M: 2 helices, 3 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 46-48 | 3 | 35 |
| β-strand | 54-56 | 3 | 35 |
| β-strand | 61-63 | 3 | 35 |
| α-helix | 66-73 | 8 | |
| α-helix | 76-86 | 11 | |
1 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| Splicing factor 3B subunit 3 | A | protein | 1217 | Homo sapiens | Q15393 (AlphaFold model) |
| Splicing factor 3B subunit 5 | B | protein | 86 | Homo sapiens | Q9BWJ5 (AlphaFold model) |
| Splicing factor 3B subunit 1 | C | protein | 1304 | Homo sapiens | O75533 (AlphaFold model) |
| PHD finger-like domain-containing protein 5A | D | protein | 110 | Homo sapiens | Q7RTV0 (AlphaFold model) |
| UNK | F | protein | 21 | Homo sapiens | |
| Minx | G | RNA | 229 | unidentified adenovirus | |
| RNU2 | H | RNA | 188 | Homo sapiens | |
| Splicing factor 3B subunit 2 | I | protein | 895 | Homo sapiens | Q13435 |
| Splicing factor 3A subunit 2 | M | protein | 464 | Homo sapiens | Q15428 |
| Splicing factor 3A subunit 3 | N | protein | 501 | Homo sapiens | Q12874 |
| Splicing factor 3B subunit 4 | K | protein | 424 | Homo sapiens | Q15427 |
Sequence of entity 1 (A), FASTA
>7ONB_1 Splicing factor 3B subunit 3 (chains A)
MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG
VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDT
PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGERGSI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTG
EDWYVLVGVAKDLILNPRSVAGGFVYTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVL
IGVGKLLRVYDLGKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQ
LIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRT
PPEVSKKLEDIRTRYAF
Sequence of entity 2 (B), FASTA
>7ONB_2 Splicing factor 3B subunit 5 (chains B)
MTDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENES
KARVRFNLMEKMLQPCGPPADKPEEN
Sequence of entity 3 (C), FASTA
>7ONB_3 Splicing factor 3B subunit 1 (chains C)
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK
GSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTE
RDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPI
GTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG
YVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLV
DVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLM
SPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNL
AKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQA
RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYG
IESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSP
DEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL
ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF
QEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAV
VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRL
TPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNT
FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE
LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVY
GFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARK
VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
Sequence of entity 4 (D), FASTA
>7ONB_4 PHD finger-like domain-containing protein 5A (chains D)
MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI
CGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR
Sequence of entity 5 (F), FASTA
>7ONB_5 UNK (chains F)
AAAAARAARAAAWRAEQAAAA
Sequence of entity 6 (G), FASTA
>7ONB_6 MINX (chains G)
GGGCGCAGUAGUCCAGGGUUUCCUUGAUGAUGUCAUACUUAUCCUGUCCCUUUUUUUUCC
ACAGCUCGCGGUUGAGGACAAACUCUUCGCGGUCUUUCCACAGGUAAGUUGGAAGCAUGU
AGAACCUUGGAUCCGAUAUCCGUACACCAUCAGGGUACGAGCUAGCCCAUGGCGUACACC
AUCAGGGUACGACUAGUAGAUCUCGUACACCAUCAGGGUACGGAAUUCU
Sequence of entity 7 (H), FASTA
>7ONB_7 RNU2 (chains H)
AUCGCUUCUCGGCCUUUUGGCUAAGAUCAAGUGUAGUAUCUGUUCUUAUCAGUUUAAUAU
CUGAUACGUCCUCUAUCCGAGGACAAUAUAUUAAAUGGAUUUUUGGAGCAGGGAGAUGGA
AUAGGAGCUUGCUCCGUCCACUCCACGCAUCGACCUGGUAUUGCAGUACCUCCAGGAACG
GUGCACCC
Sequence of entity 8 (I), FASTA
>7ONB_8 Splicing factor 3B subunit 2 (chains I)
MATEHPEPPKAELQLPPPPPPGHYGAWAAQELQAKLAEIGAPIQGNREELVERLQSYTRQ
TGIVLNRPVLRGEDGDKAAPPPMSAQLPGIPMPPPPLGLPPLQPPPPPPPPPPGLGLGFP
MAHPPNLGPPPPLRVGEPVALSEEERLKLAQQQAALLMQQEERAKQQGDHSLKEHELLEQ
QKRAAVLLEQERQQEIAKMGTPVPRPPQDMGQIGVRTPLGPRVAAPVGPVGPTPTVLPMG
APVPRPRGPPPPPGDENREMDDPSVGPKIPQALEKILQLKESRQEEMNSQQEEEEMETDA
RSSLGQSASETEEDTVSVSKKEKNRKRRNRKKKKKPQRVRGVSSESSGDREKDSTRSRGS
DSPAADVEIEYVTEEPEIYEPNFIFFKRIFEAFKLTDDVKKEKEKEPEKLDKLENSAAPK
KKGFEEEHKDSDDDSSDDEQEKKPEAPKLSKKKLRRMNRFTVAELKQLVARPDVVEMHDV
TAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIKRTGIQEMREAL
QEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYEGKEFETR
LKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPES
CSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEIDRTPWGELEPSDEESSE
EEEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPELIELRKKKIEEAMDGSET
PQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQGVEVALAPEELELDPMAM
TQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRKAQPQDSRGGSKKYKEFKF
Sequence of entity 9 (M), FASTA
>7ONB_9 Splicing factor 3A subunit 2 (chains M)
MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL
TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVT
KQRDSEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIA
FKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKMEKPPAPPSLPAGPPGVKRPPPPLMNG
LPPRPPLPESLPPPPPGGLPLPPMPPTGPAPSGPPGPPQLPPPAPGVHPPAPVVHPPASG
VHPPAPGVHPPAPGVHPPAPGVHPPTSGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPP
APGVHPPPSAGVHPQAPGVHPAAPAVHPQAPGVHPPAPGMHPQAPGVHPQPPGVHPSAPG
VHPQPPGVHPSNPGVHPPTPMPPMLRPPLPSEGPGNIPPPPPTN
Sequence of entity 10 (N), FASTA
>7ONB_10 Splicing factor 3A subunit 3 (chains N)
METILEQQRRYHEEKERLMDVMAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDL
YDDKDGLRKEELNAISGPNEFAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKARENP
SEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASEKLDYITYLSIFDQLFDIPKERKNA
EYKRYLEMLLEYLQDYTDRVKPLQDQNELFGKIQAEFEKKWENGTFPGWPKETSSALTHA
GAHLDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKGKSLESLDTSL
FAKNPKSKGTKRDTERNKDIAFLEAQIYEYVEILGEQRHLTHENVQRKQARTGEEREEEE
EEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCEICGNYTYRGPK
AFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQKASERWQPDTEEEYE
DSSGNVVNKKTYEDLKRQGLL
Sequence of entity 11 (K), FASTA
>7ONB_11 Splicing factor 3B subunit 4 (chains K)
MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVE
FLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTF
SAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK
DSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPP
GSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHGHSHPHPFPPGG
MPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPPRGPPFGS
PMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPTPRPPVPPRGPLRG
PLPQ
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| SJT | spliceostatin A (form II) | C28 H45 N O8 | 1 |
| ZN | Zinc ion | Zn | 5 |
Primary citation
Structural basis of intron selection by U2 snRNP in the presence of covalent inhibitors. Cretu, C., Gee, P., Liu, X. et al. Nat Commun (2021) 12:4491-4491. DOI 10.1038/s41467-021-24741-1 · PubMed
Other PDB entries of the same protein (UniProt Q15393 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 7Q4O 2.1 Å, Substrate-bound A-like U2 snRNP
- 7Q4P 2.15 Å, U2 snRNP after ATP-dependent remodelling
- 7Q3L 2.21 Å, Human 17S U2 snRNP 5' domain
- 7B9C 2.4 Å, Structure of a minimal SF3B core in complex with spliceostatin A (form I)
- 9RDK 2.41 Å, Cryo-EM structure of the human SAGA co-activator complex
- 7EVO 2.5 Å, The cryo-EM structure of the human 17S U2 snRNP
- 7EVN 2.6 Å, The cryo-EM structure of the DDX42-SF3b complex
- 8H6L 2.6 Å, Cryo-EM structure of human exon-defined spliceosome in the early B state.
- 8H6K 2.7 Å, Cryo-EM structure of human exon-defined spliceosome in the mature B state.
- 8HK1 2.7 Å, The cryo-EM structure of human pre-17S U2 snRNP
- 7DVQ 2.89 Å, Cryo-EM Structure of the Activated Human Minor Spliceosome (minor Bact Complex)
- 7B0I 3.0 Å, Structure of a minimal SF3B core in complex with spliceostatin A (form II)
Browse structure collections
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