7TMR: V-ATPase from Saccharomyces cerevisiae, State 1
V-ATPase from Saccharomyces cerevisiae, State 1. Determined by electron microscopy at 3.5 Å resolution. Released 13 Apr 2022.
- Method
- Electron microscopy
- Resolution
- 3.5 Å
- Organism
- Saccharomyces cerevisiae
- Chains
- 31
- Atoms
- 57,795
- Mol. weight
- 989.86 kDa
- Ligands
- ADP
- Released
- 13 Apr 2022
Explore 7TMR in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
7TMR contains 361 α-helices and 257 β-strands across 31 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain a: 36 helices, 20 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 14-20 | 7 | 64 |
| α-helix | 26-36 | 11 | |
| β-strand | 40 | 1 | 64 |
| α-helix | 50-52 | 3 | |
| α-helix | 56-78 | 23 | |
| α-helix | 86-94 | 9 | |
| α-helix | 107-141 | 35 | |
| β-strand | 187 | 1 | 65 |
| β-strand | 189-191 | 3 | 66 |
| α-helix | 196-206 | 11 | |
| β-strand | 212-213 | 2 | 65 |
| β-strand | 217 | 1 | 66 |
| β-strand | 222-223 | 2 | 67 |
| β-strand | 230-231 | 2 | 67 |
| β-strand | 234-235 | 2 | 66 |
| β-strand | 238-239 | 2 | 65 |
| α-helix | 243-255 | 13 | |
| β-strand | 259-260 | 2 | 66 |
| α-helix | 267-303 | 37 | |
| α-helix | 306-325 | 20 | |
| β-strand | 336-342 | 7 | 64 |
| α-helix | 343-345 | 3 | |
| α-helix | 346-359 | 14 | |
| β-strand | 368-370 | 3 | 64 |
| α-helix | 376-377 | 2 | |
| β-strand | 379 | 1 | 68 |
| α-helix | 385-395 | 11 | |
| α-helix | 408-421 | 14 | |
| α-helix | 426-440 | 15 | |
| α-helix | 443-447 | 5 | |
| α-helix | 456-460 | 5 | |
| α-helix | 464-478 | 15 | |
| β-strand | 481-482 | 2 | 69 |
| β-strand | 485-486 | 2 | 69 |
| β-strand | 494-495 | 2 | 70 |
| β-strand | 506 | 1 | 71 |
| β-strand | 509-510 | 2 | 70 |
| α-helix | 520-522 | 3 | |
| α-helix | 526-561 | 36 | |
| α-helix | 565-567 | 3 | |
| α-helix | 568-572 | 5 | |
| α-helix | 573-579 | 7 | |
| α-helix | 580-584 | 5 | |
| α-helix | 585-595 | 11 | |
| α-helix | 598-601 | 4 | |
| α-helix | 604-607 | 4 | |
| α-helix | 608-617 | 10 | |
| α-helix | 630-650 | 21 | |
| α-helix | 712-732 | 21 | |
| α-helix | 734-758 | 25 | |
| α-helix | 764-779 | 16 | |
| α-helix | 780-789 | 10 | |
| α-helix | 790-799 | 10 | |
| α-helix | 800-805 | 6 | |
| α-helix | 806-809 | 4 | |
| β-strand | 816 | 1 | 68 |
Chain A: 26 helices, 37 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 26-31 | 6 | 1 |
| β-strand | 34-38 | 5 | 1 |
| β-strand | 48-51 | 4 | 1 |
| β-strand | 56-64 | 9 | 1 |
| β-strand | 67-72 | 6 | 1 |
| β-strand | 80 | 1 | 2 |
| β-strand | 85-87 | 3 | 1 |
| β-strand | 93-96 | 4 | 3 |
| β-strand | 104-105 | 2 | 4 |
| α-helix | 112-119 | 8 | |
| β-strand | 123 | 1 | 5 |
| α-helix | 124-125 | 2 | |
| α-helix | 137-138 | 2 | |
| β-strand | 139-143 | 5 | 6 |
| β-strand | 151-152 | 2 | 7 |
| β-strand | 157-161 | 5 | 6 |
| β-strand | 170-173 | 4 | 6 |
| β-strand | 180-185 | 6 | 7 |
| β-strand | 189-191 | 3 | 6 |
| β-strand | 196-202 | 7 | 7 |
| β-strand | 205-210 | 6 | 7 |
| β-strand | 213-216 | 4 | 3 |
| α-helix | 220-222 | 3 | |
| β-strand | 223-226 | 4 | 8 |
| β-strand | 232 | 1 | 9 |
| α-helix | 238-242 | 5 | |
| β-strand | 247 | 1 | 9 |
| β-strand | 251-255 | 5 | 4 |
| α-helix | 262-271 | 10 | |
| β-strand | 277-281 | 5 | 4 |
| α-helix | 287-296 | 10 | |
| β-strand | 301 | 1 | 10 |
| α-helix | 304-307 | 4 | |
| β-strand | 310 | 1 | 10 |
| α-helix | 311-314 | 4 | |
| β-strand | 315-318 | 4 | 4 |
| α-helix | 326-344 | 19 | |
| β-strand | 349-354 | 6 | 4 |
| α-helix | 357-371 | 15 | |
| α-helix | 373-375 | 3 | |
| β-strand | 377 | 1 | 11 |
| β-strand | 380 | 1 | 11 |
| α-helix | 384-393 | 10 | |
| β-strand | 398-400 | 3 | 8 |
| β-strand | 407-408 | 2 | 8 |
| β-strand | 409-416 | 8 | 4 |
| α-helix | 426-434 | 9 | |
| β-strand | 437-438 | 2 | 4 |
| β-strand | 441 | 1 | 12 |
| α-helix | 443-447 | 5 | |
| β-strand | 454 | 1 | 12 |
| β-strand | 460-461 | 2 | 4 |
| α-helix | 468-474 | 7 | |
| α-helix | 478-502 | 25 | |
| α-helix | 504-506 | 3 | |
| α-helix | 509-521 | 13 | |
| α-helix | 522-526 | 5 | |
| α-helix | 540-562 | 23 | |
| α-helix | 567-573 | 7 | |
| α-helix | 575-583 | 9 | |
| α-helix | 584-586 | 3 | |
| α-helix | 589-591 | 3 | |
| α-helix | 593-614 | 22 | |
Chain b: 2 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 221-244 | 24 | |
| α-helix | 251-253 | 3 | |
Chain B: 25 helices, 29 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 17-20 | 4 | |
| β-strand | 27-28 | 2 | 1 |
| β-strand | 31-35 | 5 | 1 |
| β-strand | 38-41 | 4 | 1 |
| β-strand | 48 | 1 | 2 |
| β-strand | 52-56 | 5 | 1 |
| β-strand | 62-71 | 10 | 1 |
| β-strand | 74-79 | 6 | 1 |
| β-strand | 92-95 | 4 | 1 |
| β-strand | 101-104 | 4 | 13 |
| α-helix | 106-108 | 3 | |
| β-strand | 112-113 | 2 | 14 |
| β-strand | 119 | 1 | 14 |
| β-strand | 130-133 | 4 | 13 |
| α-helix | 138 | 1 | |
| β-strand | 139 | 1 | 5 |
| α-helix | 140 | 1 | |
| α-helix | 141-143 | 3 | |
| β-strand | 144 | 1 | 15 |
| β-strand | 150-152 | 3 | 16 |
| α-helix | 156-159 | 4 | |
| α-helix | 163 | 1 | |
| β-strand | 164-165 | 2 | 16 |
| β-strand | 169 | 1 | 14 |
| β-strand | 172-174 | 3 | 17 |
| α-helix | 180-190 | 11 | |
| β-strand | 192-193 | 2 | 16 |
| α-helix | 195-198 | 4 | |
| β-strand | 208-214 | 7 | 14 |
| β-strand | 217 | 1 | 18 |
| α-helix | 219-230 | 12 | |
| α-helix | 234-237 | 4 | |
| β-strand | 238-241 | 4 | 14 |
| β-strand | 244 | 1 | 18 |
| α-helix | 249-269 | 21 | |
| β-strand | 273-279 | 7 | 14 |
| α-helix | 281-294 | 14 | |
| α-helix | 301-303 | 3 | |
| α-helix | 308-316 | 9 | |
| β-strand | 322 | 1 | 15 |
| β-strand | 328-333 | 6 | 14 |
| β-strand | 334-336 | 3 | 17 |
| α-helix | 345-353 | 9 | |
| β-strand | 357-360 | 4 | 17 |
| α-helix | 362-366 | 5 | |
| β-strand | 373-379 | 7 | 17 |
| α-helix | 383-386 | 4 | |
| α-helix | 396-420 | 25 | |
| α-helix | 422-424 | 3 | |
| α-helix | 427-438 | 12 | |
| α-helix | 439-443 | 5 | |
| α-helix | 454-465 | 12 | |
| α-helix | 470-472 | 3 | |
| α-helix | 478-484 | 7 | |
Chain c: 9 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 17-39 | 23 | |
| α-helix | 42-44 | 3 | |
| α-helix | 47-53 | 7 | |
| α-helix | 56-90 | 35 | |
| α-helix | 96-123 | 28 | |
| α-helix | 132-134 | 3 | |
| α-helix | 136-176 | 41 | |
| α-helix | 178-207 | 30 | |
| α-helix | 209-211 | 3 | |
Chain C: 24 helices, 34 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 26-31 | 6 | 1 |
| β-strand | 34-38 | 5 | 1 |
| β-strand | 47-51 | 5 | 1 |
| β-strand | 56-64 | 9 | 1 |
| β-strand | 67-72 | 6 | 1 |
| β-strand | 85-91 | 7 | 1 |
| β-strand | 93-96 | 4 | 19 |
| β-strand | 104-105 | 2 | 20 |
| α-helix | 112-119 | 8 | |
| α-helix | 124-125 | 2 | |
| β-strand | 139-143 | 5 | 21 |
| β-strand | 151-152 | 2 | 22 |
| β-strand | 157-162 | 6 | 21 |
| β-strand | 170-173 | 4 | 21 |
| β-strand | 180-185 | 6 | 22 |
| β-strand | 189-191 | 3 | 21 |
| β-strand | 198-202 | 5 | 22 |
| β-strand | 205-209 | 5 | 22 |
| β-strand | 213-216 | 4 | 19 |
| α-helix | 220-222 | 3 | |
| β-strand | 225-226 | 2 | 20 |
| α-helix | 227-229 | 3 | |
| β-strand | 232 | 1 | 23 |
| α-helix | 238-242 | 5 | |
| β-strand | 247 | 1 | 23 |
| β-strand | 252-254 | 3 | 20 |
| α-helix | 263-272 | 10 | |
| β-strand | 277-285 | 9 | 20 |
| α-helix | 287-296 | 10 | |
| α-helix | 297-299 | 3 | |
| β-strand | 301-303 | 3 | 24 |
| β-strand | 308-310 | 3 | 24 |
| α-helix | 311-314 | 4 | |
| β-strand | 315-321 | 7 | 20 |
| α-helix | 326-344 | 19 | |
| β-strand | 349-355 | 7 | 20 |
| α-helix | 357-371 | 15 | |
| β-strand | 376 | 1 | 25 |
| β-strand | 380 | 1 | 25 |
| α-helix | 384-393 | 10 | |
| β-strand | 396-399 | 4 | 20 |
| β-strand | 407-415 | 9 | 20 |
| α-helix | 426-434 | 9 | |
| β-strand | 437-438 | 2 | 20 |
| β-strand | 441 | 1 | 26 |
| α-helix | 443-447 | 5 | |
| β-strand | 454 | 1 | 26 |
| β-strand | 460-461 | 2 | 20 |
| α-helix | 462-464 | 3 | |
| α-helix | 468-474 | 7 | |
| α-helix | 478-499 | 22 | |
| α-helix | 509-524 | 16 | |
| α-helix | 540-562 | 23 | |
| α-helix | 567-573 | 7 | |
| α-helix | 575-583 | 9 | |
| α-helix | 584-586 | 3 | |
| α-helix | 589-591 | 3 | |
| α-helix | 593-615 | 23 | |
Chain d: 24 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 4-6 | 3 | |
| α-helix | 7-21 | 15 | |
| α-helix | 25-26 | 2 | |
| α-helix | 27-34 | 8 | |
| α-helix | 39-47 | 9 | |
| α-helix | 52-55 | 4 | |
| α-helix | 65-85 | 21 | |
| α-helix | 90-111 | 22 | |
| α-helix | 122-126 | 5 | |
| α-helix | 129-131 | 3 | |
| α-helix | 136-141 | 6 | |
| α-helix | 145-153 | 9 | |
| α-helix | 159-165 | 7 | |
| α-helix | 170-172 | 3 | |
| α-helix | 176-181 | 6 | |
| α-helix | 182-198 | 17 | |
| α-helix | 204-227 | 24 | |
| α-helix | 235-241 | 7 | |
| α-helix | 251-258 | 8 | |
| α-helix | 262-269 | 8 | |
| α-helix | 273-275 | 3 | |
| α-helix | 284-301 | 18 | |
| α-helix | 307-331 | 25 | |
| α-helix | 335-340 | 6 | |
Chain D: 22 helices, 32 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 16-19 | 4 | |
| β-strand | 26-28 | 3 | 27 |
| β-strand | 31-35 | 5 | 27 |
| β-strand | 38-41 | 4 | 27 |
| β-strand | 51-56 | 6 | 27 |
| β-strand | 62-71 | 10 | 27 |
| β-strand | 74-79 | 6 | 27 |
| β-strand | 87 | 1 | 28 |
| β-strand | 92-99 | 8 | 27 |
| β-strand | 101-104 | 4 | 29 |
| α-helix | 106-108 | 3 | |
| β-strand | 112-114 | 3 | 30 |
| β-strand | 119 | 1 | 30 |
| β-strand | 130-133 | 4 | 29 |
| α-helix | 138-140 | 3 | |
| α-helix | 141-143 | 3 | |
| β-strand | 144 | 1 | 31 |
| β-strand | 150-151 | 2 | 32 |
| α-helix | 156-159 | 4 | |
| α-helix | 163 | 1 | |
| β-strand | 164-165 | 2 | 32 |
| β-strand | 169 | 1 | 30 |
| β-strand | 172-174 | 3 | 33 |
| α-helix | 180-190 | 11 | |
| β-strand | 193 | 1 | 32 |
| β-strand | 199 | 1 | 34 |
| β-strand | 202 | 1 | 34 |
| β-strand | 209-217 | 9 | 30 |
| α-helix | 219-232 | 14 | |
| α-helix | 234-237 | 4 | |
| β-strand | 238-244 | 7 | 30 |
| α-helix | 250-253 | 4 | |
| α-helix | 255-268 | 14 | |
| β-strand | 273-278 | 6 | 30 |
| α-helix | 281-294 | 14 | |
| α-helix | 297-298 | 2 | |
| β-strand | 299-301 | 3 | 35 |
| β-strand | 304-305 | 2 | 35 |
| α-helix | 308-317 | 10 | |
| β-strand | 322 | 1 | 31 |
| β-strand | 328-333 | 6 | 30 |
| β-strand | 334-336 | 3 | 33 |
| α-helix | 345-353 | 9 | |
| β-strand | 356-360 | 5 | 33 |
| α-helix | 362-366 | 5 | |
| β-strand | 373-380 | 8 | 33 |
| β-strand | 388 | 1 | 36 |
| β-strand | 391 | 1 | 36 |
| α-helix | 396-419 | 24 | |
| α-helix | 427-438 | 12 | |
| α-helix | 439-444 | 6 | |
| α-helix | 454-465 | 12 | |
| α-helix | 470-472 | 3 | |
| α-helix | 478-484 | 7 | |
23 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| H(+)-transporting two-sector ATPase | A, C, E | protein | 617 | Saccharomyces cerevisiae | P17255 (AlphaFold model) |
| Vacuolar proton pump subunit B | B, D, F | protein | 517 | Saccharomyces cerevisiae | P16140 (AlphaFold model) |
| V-type proton ATPase subunit E | G, I, K | protein | 233 | Saccharomyces cerevisiae | P22203 (AlphaFold model) |
| V-type proton ATPase subunit G | H, J, L | protein | 114 | Saccharomyces cerevisiae | P48836 (AlphaFold model) |
| V-type proton ATPase subunit D | M | protein | 256 | Saccharomyces cerevisiae | P32610 |
| V-type proton ATPase subunit F | N | protein | 118 | Saccharomyces cerevisiae | P39111 |
| V-type proton ATPase subunit C | O | protein | 392 | Saccharomyces cerevisiae | P31412 |
| V-type proton ATPase subunit H | P | protein | 478 | Saccharomyces cerevisiae | P41807 |
| V-type proton ATPase subunit a, vacuolar isoform | a | protein | 840 | Saccharomyces cerevisiae | P32563 |
| V0 assembly protein 1 | b | protein | 265 | Saccharomyces cerevisiae | P53262 |
| V-type proton ATPase subunit c'' | c | protein | 213 | Saccharomyces cerevisiae | P23968 |
| V-type proton ATPase subunit d | d | protein | 345 | Saccharomyces cerevisiae | P32366 |
4 more molecules are not listed.
Sequence of entity 1 (A, C, E), FASTA
>7TMR_1 H(+)-transporting two-sector ATPase (chains A, C, E)
MAGAIENARKEIKRISLEDHAESEYGAIYSVSGPVVIAENMIGCAMYELVKVGHDNLVGE
VIRIDGDKATIQVYEETAGLTVGDPVLRTGKPLSVELGPGLMETIYDGIQRPLKAIKEES
QSIYIPRGIDTPALDRTIKWQFTPGKFQVGDHISGGDIYGSVFENSLISSHKILLPPRSR
GTITWIAPAGEYTLDEKILEVEFDGKKSDFTLYHTWPVRVPRPVTEKLSADYPLLTGQRV
LDALFPCVQGGTTCIPGAFGCGKTVISQSLSKYSNSDAIIYVGCGERGNEMAEVLMEFPE
LYTEMSGTKEPIMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDQGKNVSMIADSSSR
WAEALREISGRLGEMPADQGFPAYLGAKLASFYERAGKAVALGSPDRTGSVSIVAAVSPA
GGDFSDPVTTATLGITQVFWGLDKKLAQRKHFPSINTSVSYSKYTNVLNKFYDSNYPEFP
VLRDRMKEILSNAEELEQVVQLVGKSALSDSDKITLDVATLIKEDFLQQNGYSTYDAFCP
IWKTFDMMRAFISYHDEAQKAVANGANWSKLADSTGDVKHAVSSSKFFEPSRGEKEVHGE
FEKLLSTMQERFAESTD
Sequence of entity 2 (B, D, F), FASTA
>7TMR_2 Vacuolar proton pump subunit B (chains B, D, F)
MVLSDKELFAINKKAVEQGFNVKPRLNYNTVSGVNGPLVILEKVKFPRYNEIVNLTLPDG
TVRQGQVLEIRGDRAIVQVFEGTSGIDVKKTTVEFTGESLRIPVSEDMLGRIFDGSGRPI
DNGPKVFAEDYLDINGSPINPYARIYPEEMISTGVSAIDTMNSIARGQKIPIFSASGLPH
NEIAAQICRQAGLVRPTKDVHDGHEENFSIVFAAMGVNLETARFFKQDFEENGSLERTSL
FLNLANDPTIERIITPRLALTTAEYLAYQTERHVLTILTDMSSYADALREVSAAREEVPG
RRGYPGYMYTDLSTIYERAGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIFV
DRQLHNKGIYPPINVLPSLSRLMKSAIGEGMTRKDHGDVSNQLYAKYAIGKDAAAMKAVV
GEEALSIEDKLSLEFLEKFEKTFITQGAYEDRTVFESLDQAWSLLRIYPKEMLNRISPKI
LDEFYDRARDDADEDEEDPDTRSSGKKKDASQEESLI
Sequence of entity 3 (G, I, K), FASTA
>7TMR_3 V-type proton ATPase subunit E (chains G, I, K)
MSSAITALTPNQVNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDG
NFKSKLKKAMLSQQITKSTIANKMRLKVLSAREQSLDGIFEETKEKLSGIANNRDEYKPI
LQSLIVEALLKLLEPKAIVKALERDVDLIESMKDDIMREYGEKAQRAPLEEIVISNDYLN
KDLVSGGVVVSNASDKIEINNTLEERLKLLSEEALPAIRLELYGPSKTRKFFD
Sequence of entity 4 (H, J, L), FASTA
>7TMR_4 V-type proton ATPase subunit G (chains H, J, L)
MSQKNGIATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDKELKEFEQK
NAGGVGELEKKAEAGVQGELAEIKKIAEKKKDDVVKILIETVIKPSAEVHINAL
Sequence of entity 5 (M), FASTA
>7TMR_5 V-type proton ATPase subunit D (chains M)
MSGNREQVFPTRMTLGLMKTKLKGANQGYSLLKRKSEALTKRFRDITKRIDDAKQKMGRV
MQTAAFSLAEVSYATGENIGYQVQESVSTARFKVRARQENVSGVYLSQFESYIDPEINDF
RLTGLGRGGQQVQRAKEIYSRAVETLVELASLQTAFIILDEVIKVTNRRVNAIEHVIIPR
TENTIAYINSELDELDREEFYRLKKVQEKKQNETAKLDAEMKLKRDRAEQDASEVAADEE
PQGETLVADQEDDVIF
Sequence of entity 6 (N), FASTA
>7TMR_6 V-type proton ATPase subunit F (chains N)
MAEKRTLIAVIADEDTTTGLLLAGIGQITPETQEKNFFVYQEGKTTKEEITDKFNHFTEE
RDDIAILLINQHIAENIRARVDSFTNAFPAILEIPSKDHPYDPEKDSVLKRVRKLFGE
Sequence of entity 7 (O), FASTA
>7TMR_7 V-type proton ATPase subunit C (chains O)
MATALYTANDFILISLPQNAQPVTAPGSKTDSWFNETLIGGRAFVSDFKIPEFKIGSLDT
LIVESEELSKVDNQIGASIGKIIEILQGLNETSTNAYRTLPINNMPVPEYLENFQWQTRK
FKLDKSIKDLITLISNESSQLDADVRATYANYNSAKTNLAAAERKKTGDLSVRSLHDIVK
PEDFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSKNVVPASASVIAEDAEYVLFNVHLFK
KNVQEFTTAAREKKFIPREFNYSEELIDQLKKEHDSAASLEQSLRVQLVRLAKTAYVDVF
INWFHIKALRVYVESVLRYGLPPHFNIKIIAVPPKNLSKCKSELIDAFGFLGGNAFMKDK
KGKINKQDTSLHQYASLVDTEYEPFVMYIINL
Sequence of entity 8 (P), FASTA
>7TMR_8 V-type proton ATPase subunit H (chains P)
MGATKILMDSTHFNEIRSIIRSRSVAWDALARSEELSEIDASTAKALESILVKKNIGDGL
SSSNNAHSGFKVNGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQED
PKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQM
DTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGI
QLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCST
RVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYV
AELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIII
QVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYTFK
Sequence of entity 9 (a), FASTA
>7TMR_9 V-type proton ATPase subunit a, vacuolar isoform (chains a)
MAEKEEAIFRSAEMALVQFYIPQEISRDSAYTLGQLGLVQFRDLNSKVRAFQRTFVNEIR
RLDNVERQYRYFYSLLKKHDIKLYEGDTDKYLDGSGELYVPPSGSVIDDYVRNASYLEER
LIQMEDATDQIEVQKNDLEQYRFILQSGDEFFLKGDNTDSTSYMDEDMIDANGENIAAAI
GASVNYVTGVIARDKVATLEQILWRVLRGNLFFKTVEIEQPVYDVKTREYKHKNAFIVFS
HGDLIIKRIRKIAESLDANLYDVDSSNEGRSQQLAKVNKNLSDLYTVLKTTSTTLESELY
AIAKELDSWFQDVTREKAIFEILNKSNYDTNRKILIAEGWIPRDELATLQARLGEMIARL
GIDVPSIIQVLDTNHTPPTFHRTNKFTAGFQSICDCYGIAQYREINAGLPTIVTFPFMFA
IMFGDMGHGFLMTLAALSLVLNEKKINKMKRGEIFDMAFTGRYIILLMGVFSMYTGFLYN
DIFSKTMTIFKSGWKWPDHWKKGESITATSVGTYPIGLDWAWHGTENALLFSNSYKMKLS
ILMGFIHMTYSYFFSLANHLYFNSMIDIIGNFIPGLLFMQGIFGYLSVCIVYKWAVDWVK
DGKPAPGLLNMLINMFLSPGTIDDELYPHQAKVQVFLLLMALVCIPWLLLVKPLHFKFTH
KKKSHEPLPSTEADASSEDLEAQQLISAMDADDAEEEEVGSGSHGEDFGDIMIHQVIHTI
EFCLNCVSHTASYLRLWALSLAHAQLSSVLWTMTIQIAFGFRGFVGVFMTVALFAMWFAL
TCAVLVLMEGTSAMLHSLRLHWVESMSKFFVGEGLPYEPFAFEYKDMEVAVASASSSASS
Sequence of entity 10 (b), FASTA
>7TMR_10 V0 assembly protein 1 (chains b)
MVFGQLYALFIFTLSCCISKTVQADSSKESSSFISFDKESNWDTISTISSTADVISSVDS
AIAVFEFDNFSLLDNLMIDEEYPFFNRFFANDVSLTVHDDSPLNISQSLSPIMEQFTVDE
LPESASDLLYEYSLDDKSIVLFKFTSDAYDLKKLDEFIDSCLSFLEDKSGDNLTVVINSL
GWAFEDEDGDDEYATEETLSHHDNNKGKEGDDDILSSIWTEGLLMCLIVSALLLFILIVA
LSWISNLDITYGALEKSTNPIKKNN
Sequence of entity 11 (c), FASTA
>7TMR_11 V-type proton ATPase subunit c'' (chains c)
MNKESKDDDMSLGKFSFSHFLYYLVLIVVIVYGLYKLFTGHGSDINFGKFLLRTSPYMWA
NLGIALCVGLSVVGAAWGIFITGSSMIGAGVRAPRITTKNLISIIFCEVVAIYGLIIAIV
FSSKLTVATAENMYSKSNLYTGYSLFWAGITVGASNLICGIAVGITGATAAISDAADSAL
FVKILVIEIFGSILGLLGLIVGLLMAGKASEFQ
Sequence of entity 12 (d), FASTA
>7TMR_12 V-type proton ATPase subunit d (chains d)
MEGVYFNIDNGFIEGVVRGYRNGLLSNNQYINLTQCDTLEDLKLQLSSTDYGNFLSSVSS
ESLTTSLIQEYASSKLYHEFNYIRDQSSGSTRKFMDYITYGYMIDNVALMITGTIHDRDK
GEILQRCHPLGWFDTLPTLSVATDLESLYETVLVDTPLAPYFKNCFDTAEELDDMNIEII
RNKLYKAYLEDFYNFVTEEIPEPAKECMQTLLGFEADRRSINIALNSLQSSDIDPDLKSD
LLPNIGKLYPLATFHLAQAQDFEGVRAALANVYEYRGFLETGNLEDHFYQLEMELCRDAF
TQQFAISTVWAWMKSKEQEVRNITWIAECIAQNQRERINNYISVY
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| ADP | Adenosine-5'-diphosphate | C10 H15 N5 O10 P2 | 1 |
Primary citation
Coordinated conformational changes in the V 1 complex during V-ATPase reversible dissociation. Vasanthakumar, T., Keon, K.A., Bueler, S.A. et al. Nat Struct Mol Biol (2022) 29:430-439. DOI 10.1038/s41594-022-00757-z · PubMed
Other PDB entries of the same protein (UniProt P17255 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 1GPP 1.35 Å, Crystal structure of the S.cerevisiae Homing Endonuclease PI-SceI Domain I
- 1DFA 2.0 Å, Crystal structure of pi-scei in C2 space group
- 1EF0 2.1 Å, Crystal structure of pi-scei miniprecursor
- 1JVA 2.1 Å, Crystal structure of the VMA1-derived endonuclease bearing the N and C extein propeptides
- 1VDE 2.4 Å, Pi-scei, a homing endonuclease with protein splicing activity
- 9COP 2.7 Å, Yeast RAVE bound to V-ATPase V1 complex
- 1UM2 2.9 Å, Crystal Structure of the Vma1-Derived Endonuclease with the Ligated Extein Segment
- 1LWT 3.2 Å, Crystal structure of the intein homing endonuclease PI-SceI bound to its substrate DNA…
- 7TMO 3.3 Å, V1 complex lacking subunit C from Saccharomyces cerevisiae, State 1
- 7TMP 3.3 Å, V1 complex lacking subunit C from Saccharomyces cerevisiae, State 2
- 7TMQ 3.3 Å, V1 complex lacking subunit C from Saccharomyces cerevisiae, State 3
- 1LWS 3.5 Å, Crystal structure of the intein homing endonuclease PI-SceI bound to its recognition…
Browse structure collections
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