7X5G: Nrf2 (A510Y)-MafG heterodimer

Name: PDB 7X5G: Nrf2 (A510Y)-MafG heterodimer bound with CsMBE2
Published: 2022-11-09
License: https://creativecommons.org/publicdomain/zero/1.0/
Keywords: transcription

Nrf2 (A510Y)-MafG heterodimer bound with CsMBE2. Determined by X-ray diffraction at 2.3 Å resolution. Released 9 Nov 2022.

Method: X-ray diffraction
Resolution: 2.3 Å
Organisms: Homo sapiens, synthetic construct
Chains: 8
Atoms: 4,634
Mol. weight: 70.63 kDa
Released: 9 Nov 2022

Explore 7X5G in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

7X5G contains 15 α-helices and 0 β-strands across 4 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 4 helices, 0 β-strands

Element	Residues	Length
α-helix	26-31	6
α-helix	34-37	4
α-helix	38-40	3
α-helix	46-118	73

Chain B: 4 helices, 0 β-strands

Element	Residues	Length
α-helix	456-463	8
α-helix	470-475	6
α-helix	478-485	8
α-helix	492-556	65

Chain E: 3 helices, 0 β-strands

Element	Residues	Length
α-helix	28-31	4
α-helix	34-41	8
α-helix	46-118	73

Chain F: 4 helices, 0 β-strands

Element	Residues	Length
α-helix	456-463	8
α-helix	470-475	6
α-helix	478-486	9
α-helix	492-555	64

Molecules and chains

Molecule	Chains	Type	Length	Organism	UniProt
Transcription factor MafG	A, E	protein	104	Homo sapiens	O15525 (AlphaFold model)
Nuclear factor erythroid 2-related factor 2	B, F	protein	113	Homo sapiens	Q16236 (AlphaFold model)
DNA (5'-d(gpcptpgpcptpgpapgptpcpapcptpgpt)-3')	C, G	DNA	16	synthetic construct
DNA (5'-d(cpapcpapgptpgpapcptpcpapgpcpapg)-3')	D, H	DNA	16	synthetic construct

Sequence of entity 1 (A, E), FASTA

>7X5G_1 Transcription factor MafG (chains A, E)
MGTSLTDEELVTMSVRELNQHLRGLSKEEIVQLKQRRRTLKNRGYAASCRVKRVTQKEEL
EKQKAELQQEVEKLASENASMKLELDALRSKYEALQTFARTVAR

Sequence of entity 2 (B, F), FASTA

>7X5G_2 Nuclear factor erythroid 2-related factor 2 (chains B, F)
GPHMAHLTRDELRAKALHIPFPVEKIINLPVVDFNEMMSKEQFNEAQLALIRDIRRRGKN
KVYAQNCRKRKLENIVELEQDLDHLKDEKEKLLKEKGENDKSLHLLKKQLSTL

Sequence of entity 3 (C, G), FASTA

>7X5G_3 DNA (5'-D(*GP*CP*TP*GP*CP*TP*GP*AP*GP*TP*CP*AP*CP*TP*GP*T)-3') (chains C, G)
GCTGCTGAGTCACTGT

Sequence of entity 4 (D, H), FASTA

>7X5G_4 DNA (5'-D(*CP*AP*CP*AP*GP*TP*GP*AP*CP*TP*CP*AP*GP*CP*AP*G)-3') (chains D, H)
CACAGTGACTCAGCAG

Primary citation

Structural basis of transcription regulation by CNC family transcription factor, Nrf2. Sengoku, T., Shiina, M., Suzuki, K. et al. Nucleic Acids Res (2022) 50:12543-12557. DOI 10.1093/nar/gkac1102 · PubMed

Other PDB entries of the same protein (UniProt O15525 (AlphaFold model), which also has an AlphaFold model), best resolution first:

7X5E 2.3 Å, Nrf2-MafG heterodimer bound with CsMBE1
7X5F 2.6 Å, Nrf2-MafG heterodimer bound with CsMBE2

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