7ZSA: DNA-directed RNA polymerase II subunit RPB1

Name: PDB 7ZSA: Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome and NTP (complex B)
Published: 2022-11-16
License: https://creativecommons.org/publicdomain/zero/1.0/
Keywords: transcription

Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome and NTP (complex B). Determined by electron microscopy at 4.0 Å resolution. Released 16 Nov 2022.

Method: Electron microscopy
Resolution: 4.0 Å
Organisms: Saccharomyces cerevisiae, synthetic construct, Xenopus laevis
Chains: 38
Atoms: 86,388
Mol. weight: 1535.67 kDa
Ligands: SF4, MG, ZN
Released: 16 Nov 2022

Explore 7ZSA in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

7ZSA contains 475 α-helices and 450 β-strands across 36 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain 0: 42 helices, 27 β-strands

Element	Residues	Length	Sheet
β-strand	2-5	4	116
β-strand	8-11	4	116
β-strand	17	1	117
α-helix	19-34	16
β-strand	37-41	5	118
α-helix	42-43	2
β-strand	45	1	119
α-helix	48-62	15
β-strand	69-73	5	118
α-helix	76-97	22
β-strand	104-107	4	118
α-helix	126-137	12
α-helix	140-147	8
α-helix	157-160	4
α-helix	161-164	4
β-strand	174-176	3	118
α-helix	178-187	10
α-helix	192-198	7
β-strand	205-209	5	118
α-helix	211-214	4
α-helix	219-225	7
β-strand	231-235	5	118
α-helix	237-239	3
α-helix	240-247	8
β-strand	250-253	4	120
α-helix	254-277	24
α-helix	280-291	12
α-helix	295-298	4
α-helix	313-315	3
α-helix	320-321	2
α-helix	328-346	19
β-strand	352-354	3	120
α-helix	356-366	11
α-helix	371-374	4
α-helix	377-388	12
α-helix	397-411	15
β-strand	416-421	6	120
β-strand	434-439	6	120
α-helix	443-452	10
β-strand	456-460	5	118
α-helix	468-472	5
β-strand	477-482	6	118
α-helix	483-486	4
β-strand	492-497	6	121
β-strand	499	1	122
β-strand	505	1	122
α-helix	510-512	3
α-helix	516-532	17
β-strand	536-541	6	121
α-helix	544-557	14
α-helix	559-566	8
β-strand	568-571	4	121
α-helix	576-591	16
β-strand	596-601	6	121
α-helix	614-617	4
β-strand	619-623	5	121
α-helix	633-645	13
α-helix	650-667	18
β-strand	671	1	119
β-strand	677-682	6	121
α-helix	687-692	6
α-helix	695-700	6
α-helix	703-705	3
β-strand	708	1	121
α-helix	711-724	14
α-helix	727-729	3
α-helix	730-733	4
β-strand	739	1	117
α-helix	741-751	11

Chain 1: 31 helices, 13 β-strands

Element	Residues	Length	Sheet
β-strand	5-9	5	123
β-strand	12-19	8	123
β-strand	26-31	6	123
β-strand	37-41	5	123
α-helix	42-44	3
β-strand	45-49	5	123
β-strand	50	1	113
β-strand	60-64	5	123
β-strand	86-91	6	123
α-helix	94-120	27
α-helix	171-176	6
α-helix	178-187	10
α-helix	190-195	6
α-helix	196-200	5
α-helix	201-202	2
α-helix	206-211	6
α-helix	214-225	12
α-helix	228-230	3
α-helix	233-236	4
β-strand	246-252	7	112
α-helix	253-262	10
α-helix	264-273	10
α-helix	280-288	9
α-helix	291-297	7
α-helix	299-301	3
α-helix	313-329	17
α-helix	339-343	5
α-helix	352-354	3
β-strand	362	1	124
β-strand	368	1	124
α-helix	371-387	17
α-helix	414-419	6
α-helix	426-430	5
β-strand	432	1	125
β-strand	434	1	126
α-helix	441-444	4
α-helix	466-481	16
α-helix	486-489	4
α-helix	495-513	19
α-helix	537-539	3
α-helix	544-570	27
α-helix	576-599	24
α-helix	609-615	7
α-helix	617-638	22

Chain 2: 22 helices, 19 β-strands

Element	Residues	Length	Sheet
α-helix	7-16	10
α-helix	19-25	7
α-helix	29-36	8
α-helix	41-51	11
β-strand	57-58	2	127
α-helix	59-65	7
β-strand	66	1	128
α-helix	71-81	11
β-strand	87-92	6	127
β-strand	95-100	6	127
α-helix	102-113	12
β-strand	124	1	129
α-helix	131-136	6
α-helix	137-151	15
α-helix	161-169	9
β-strand	174-176	3	130
β-strand	181-183	3	130
α-helix	186-193	8
α-helix	196-210	15
α-helix	218-230	13
β-strand	237-238	2	129
α-helix	244-256	13
β-strand	259-260	2	131
β-strand	268-269	2	129
β-strand	270-271	2	131
α-helix	273-279	7
β-strand	338-341	4	132
β-strand	346-350	5	132
α-helix	354-360	7
β-strand	365-369	5	132
β-strand	373-377	5	132
α-helix	380-388	9
α-helix	393-402	10
β-strand	404	1	132
α-helix	406-422	17
α-helix	435-448	14
β-strand	452-459	8	60
α-helix	465-477	13
β-strand	481-485	5	60
β-strand	490-494	5	60
α-helix	498-506	9

Chain 3: 4 helices, 5 β-strands

Element	Residues	Length	Sheet
β-strand	28-30	3	133
β-strand	37-39	3	133
α-helix	40-46	7
β-strand	52-53	2	134
β-strand	62-63	2	134
β-strand	69	1	133
α-helix	76-89	14
α-helix	103-122	20
α-helix	126-138	13

Chain 4: 17 helices, 13 β-strands

Element	Residues	Length	Sheet
β-strand	24-31	8	34
α-helix	34-43	10
α-helix	49-67	19
β-strand	72-79	8	34
β-strand	82-87	6	34
α-helix	89-90	2
α-helix	91-96	6
α-helix	116-138	23
α-helix	142-144	3
α-helix	149-166	18
β-strand	173-181	9	34
α-helix	190-192	3
α-helix	193-206	14
β-strand	210-215	6	34
α-helix	222-230	9
β-strand	235-238	4	34
α-helix	244-250	7
α-helix	256-258	3
β-strand	262	1	128
β-strand	275	1	35
β-strand	282	1	35
α-helix	283	1
β-strand	286-289	4	36
β-strand	295-296	2	36
α-helix	299-300	2
α-helix	301-303	3
β-strand	304	1	37
β-strand	311	1	37
α-helix	314-321	8
α-helix	323-325	3

Chain 5: 2 helices, 3 β-strands

Element	Residues	Length	Sheet
β-strand	5-11	7	60
α-helix	14-26	13
β-strand	31-33	3	60
β-strand	39-42	4	60
α-helix	47-57	11

Chain 6: 18 helices, 23 β-strands

Element	Residues	Length	Sheet
α-helix	83-85	3
α-helix	99-110	12
β-strand	118	1	126
β-strand	120	1	65
β-strand	124-131	8	66
α-helix	134-137	4
α-helix	145-163	19
β-strand	168-175	8	66
β-strand	178-186	9	66
α-helix	189-201	13
α-helix	203-204	2
α-helix	210-220	11
β-strand	229-236	8	66
α-helix	247-256	10
β-strand	259-265	7	66
α-helix	271-280	10
β-strand	288-290	3	66
α-helix	294-304	11
α-helix	307-308	2
β-strand	309	1	65
α-helix	310	1
β-strand	311	1	125
β-strand	319-323	5	36
β-strand	326-327	2	67
β-strand	334-335	2	68
β-strand	342-343	2	68
β-strand	347-348	2	67
β-strand	355-356	2	67
β-strand	361-362	2	36
β-strand	369-370	2	36
α-helix	373-380	8
α-helix	385-389	5
β-strand	390-391	2	69
α-helix	392-393	2
α-helix	397-398	2
β-strand	402	1	70
β-strand	409	1	70
β-strand	427-428	2	69
β-strand	435-436	2	69
α-helix	438-446	9
α-helix	452-456	5

Chain 7: 38 helices, 30 β-strands

Element	Residues	Length	Sheet
α-helix	105-107	3
α-helix	109-112	4
β-strand	117	1	132
α-helix	122-124	3
β-strand	132-134	3	73
β-strand	140-144	5	73
α-helix	150-160	11
β-strand	162-165	4	73
β-strand	170-174	5	73
α-helix	177-185	9
α-helix	190-200	11
β-strand	201	1	73
α-helix	204-206	3
α-helix	207-217	11
β-strand	223-227	5	74
β-strand	232-236	5	74
α-helix	240-244	5
β-strand	251	1	75
β-strand	314-317	4	74
β-strand	318	1	75
α-helix	320-322	3
α-helix	323-332	10
β-strand	338	1	74
β-strand	340-341	2	76
α-helix	350-351	2
β-strand	356	1	77
α-helix	364-373	10
β-strand	379-380	2	76
β-strand	382-385	4	78
α-helix	392-403	12
β-strand	407-411	5	78
α-helix	414-426	13
β-strand	428	1	77
α-helix	432-434	3
β-strand	435-437	3	78
β-strand	452-456	5	78
α-helix	457-460	4
α-helix	465-467	3
α-helix	468-479	12
β-strand	482-488	7	78
α-helix	490-492	3
α-helix	498-502	5
β-strand	507-514	8	78
α-helix	522-526	5
α-helix	527-530	4
β-strand	534-537	4	78
α-helix	540-545	6
β-strand	552-559	8	79
α-helix	560-562	3
α-helix	563-569	7
α-helix	574-582	9
α-helix	585-600	16
β-strand	605-608	4	79
α-helix	612-622	11
β-strand	626-627	2	79
α-helix	633-644	12
β-strand	651-654	4	79
α-helix	656-659	4
β-strand	669-672	4	79
α-helix	680-687	8
α-helix	694-697	4
β-strand	703-710	8	79
α-helix	714-722	9
α-helix	724-729	6
β-strand	734-736	3	79
α-helix	748	1
α-helix	753-766	14
α-helix	833-835	3

28 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.

Molecules and chains

Molecule	Chains	Type	Length	Organism	UniProt
DNA-directed RNA polymerase II subunit RPB1	A	protein	1733	Saccharomyces cerevisiae	P04050 (AlphaFold model)
DNA-directed RNA polymerase II subunit RPB2	B	protein	1224	Saccharomyces cerevisiae	P08518 (AlphaFold model)
DNA-directed RNA polymerase II subunit RPB3	C	protein	347	Saccharomyces cerevisiae	P16370 (AlphaFold model)
DNA-directed RNA polymerase II subunit RPB4	D	protein	221	Saccharomyces cerevisiae	P20433 (AlphaFold model)
DNA-directed RNA polymerases I, II, and III subunit RPABC1	E	protein	215	Saccharomyces cerevisiae	P20434
DNA-directed RNA polymerases I, II, and III subunit RPABC2	F	protein	155	Saccharomyces cerevisiae	P20435
DNA-directed RNA polymerase II subunit RPB7	G	protein	177	Saccharomyces cerevisiae	P34087
DNA-directed RNA polymerases I, II, and III subunit RPABC3	H	protein	146	Saccharomyces cerevisiae	P20436
DNA-directed RNA polymerase II subunit RPB9	I	protein	122	Saccharomyces cerevisiae	P27999
DNA-directed RNA polymerases I, II, and III subunit RPABC5	J	protein	70	Saccharomyces cerevisiae	P22139
DNA-directed RNA polymerase II subunit RPB11	K	protein	120	Saccharomyces cerevisiae	P38902
DNA-directed RNA polymerases I, II, and III subunit RPABC4	L	protein	70	Saccharomyces cerevisiae	P40422

22 more molecules are not listed.

Sequence of entity 1 (A), FASTA

>7ZSA_1 DNA-directed RNA polymerase II subunit RPB1 (chains A)
MVGQQYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGS
IDRNLKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNE
LMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVSRGGCGNTQPTIRKDGLK
LVGSWKKDRATGDADEPELRVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLP
VPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESLLQFHV
ATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLE
LDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKR
AGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNA
DFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTF
IELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQRFDEGTTLLSP
KDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHN
GFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVR
FLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFV
DRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRR
LVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAFEKRYRVD
LLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNI
RRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCC
LLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMT
LNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAKLIRSAIEH
TTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQSFDQQSPWLLRLELDRA
AMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSLDAETEAEEDHML
KKIENTMLENITLRGVENIERVVMMKYDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVP
GIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGG
LTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGA
FDVMIDEESLVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGS
NDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHNENENSR

Sequence of entity 2 (B), FASTA

>7ZSA_2 DNA-directed RNA polymerase II subunit RPB2 (chains B)
MSDLANSEKYYDEDPYGFEDESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQ
DIICEDSTLILEQLAQHTTESDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLR
NLTYSSGLFVDVKKRTYEAIDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCY
LSEATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEI
RSALEKGSRFISTLQVKLYGREGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEH
ICYDVNDWQMLEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEF
LPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTL
FKKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVS
QVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLS
LMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETL
RTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAK
LMATEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEEND
LDVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGV
FLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMI
MNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIA
PGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDG
LKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSR
MTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKK
LMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIA
HGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAA
KLLFQELMAMNITPRLYTDRSRDF

Sequence of entity 3 (C), FASTA

>7ZSA_3 DNA-directed RNA polymerase II subunit RPB3 (chains C)
MGSHHHHHHSNSGLNDIFEAQKIEWHEDTGSSEGPQVKIREASKDNVDFILSNVDLAMAN
SLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDIEQLEYSRDCFCEDH
CDKCSVVLTLQAFGESESTTNVYSKDLVIVSNLMGRNIGHPIIQDKEGNGVLICKLRKGQ
ELKLTCVAKKGIAKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDSAKEWPQSKNCEYED
PPNEGDPFDYKAQADTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLALTQMDQDKVN
FASGDNNTASNMLGSNEDVMMTGAEQDPYSNASQMGNTGSGGYDNAW

Sequence of entity 4 (D), FASTA

>7ZSA_4 DNA-directed RNA polymerase II subunit RPB4 (chains D)
MNVSTSTFQTRRRRLKKVEEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVIK
EALVERRRAFKRSQKKHKKKHLKHENANDETTAVEDEDDDLDEDDVNADDDDFMHSETRE
KELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQL
GSLACDTADEAKTLIPSLNNKISDDELERILKELSNLETLY

Sequence of entity 5 (E), FASTA

>7ZSA_5 DNA-directed RNA polymerases I, II, and III subunit RPABC1 (chains E)
MDQENERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSF
QANPTEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSA
MKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQLPRIQR
ADPVALYLGLKRGEVVKIIRKSETSGRYASYRICM

Sequence of entity 6 (F), FASTA

>7ZSA_6 DNA-directed RNA polymerases I, II, and III subunit RPABC2 (chains F)
MSDYEEAFNDGNENFEDFDVEHFSDEETYEEKPQFKDGETTDANGKTIVTGGNGPEDFQQ
HEQIRRKTLKEKAIPKDQRATTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRI
AMKELAEKKIPLVIRRYLPDGSFEDWSVEELIVDL

Sequence of entity 7 (G), FASTA

>7ZSA_7 DNA-directed RNA polymerase II subunit RPB7 (chains G)
MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGR
ILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLT
FNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSIHAIGSIKEDYLGAIHHHHHH

Sequence of entity 8 (H), FASTA

>7ZSA_8 DNA-directed RNA polymerases I, II, and III subunit RPABC3 (chains H)
MSNTLFDDIFQVSEVDPGRYNKVCRIEAASTTQDQCKLTLDINVELFPVAAQDSLTVTIA
SSLNLEDTPANDSSATRSWRPPQAGDRSLADDYDYVMYGTAYKFEEVSKDLIAVYYSFGG
LLMRLEGNYRNLNNLKQENAYLLIRR

Sequence of entity 9 (I), FASTA

>7ZSA_9 DNA-directed RNA polymerase II subunit RPB9 (chains I)
MTTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSPLVYRHELITNIGETAGVVQ
DIGSDPTLPRSDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQKNKRTQ
FS

Sequence of entity 10 (J), FASTA

>7ZSA_10 DNA-directed RNA polymerases I, II, and III subunit RPABC5 (chains J)
MIVPVRCFSCGKVVGDKWESYLNLLQEDELDEGTALSRLGLKRYCCRRMILTHVDLIEKF
LRYNPLEKRD

Sequence of entity 11 (K), FASTA

>7ZSA_11 DNA-directed RNA polymerase II subunit RPB11 (chains K)
MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA
YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLAADDAF

Sequence of entity 12 (L), FASTA

>7ZSA_12 DNA-directed RNA polymerases I, II, and III subunit RPABC4 (chains L)
MSREGFQIPTNLDAAAAGTSQARTATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKAR
TKRLVQFEAR

Ligands and cofactors

ID	Name	Formula	Copies
SF4	Iron/sulfur cluster	Fe4 S4	1
MG	Magnesium ion	Mg	1
ZN	Zinc ion	Zn	17

Primary citation

Structures of transcription preinitiation complex engaged with the +1 nucleosome. Wang, H., Schilbach, S., Ninov, M. et al. Nat Struct Mol Biol (2023) 30:226-232. DOI 10.1038/s41594-022-00865-w · PubMed

Other PDB entries of the same protein (UniProt P04050 (AlphaFold model), which also has an AlphaFold model), best resolution first:

5VKO 1.8 Å, SPT6 tSH2-RPB1 1468-1500 pT1471, pS1493
9SV6 1.96 Å, CryoEM structure of transcribing RNA polymerase II elongation complex with ATP and Elf1
5VKL 2.2 Å, SPT6 tSH2-RPB1 1476-1500 pS1493
9W8V 2.23 Å, Structure of post-translocation state of yeast Pol II complexed with a cisplatin-induced…
9QEB 2.26 Å, CryoEM structure of transcribing RNA polymerase II elongation complex
1TWF 2.3 Å, RNA polymerase II complexed with UTP at 2.3 A resolution
9RYB 2.33 Å, CryoEM structure of transcribing RNA polymerase II elongation complex in post-catalysis…
9KD8 2.46 Å, The structure of RNA polymerase II elongation complex paused at N-2 state by actinomycin…
6NPW 2.49 Å, SSu72/Sympk in complex with Ser2/Ser5 phosphorylated peptide
9K7F 2.5 Å, RNA polymerase II elongation complex apo structure.
30ES 2.54 Å, Cryo-EM structure of the yeast RNA polymerase II elongation complex with 19-mer RNA in…
30EP 2.55 Å, Cryo-EM structure of the yeast RNA polymerase II elongation complex with 19-mer RNA in…

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