HIF prolyl-hydroxylase-2 (PHD2) T387V variant bound to Fe(III), 2-oxoglutarate (2OG) and Hypoxia-inducible Factor-2alpha (HIF-2alpha). Determined by X-ray diffraction at 1.62 Å resolution. Released 12 Feb 2025.
Explore 8RUT in 3D Show helices and sheets RCSB PDB PDBe
8RUT contains 12 α-helices and 19 β-strands across 2 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
| Element | Residues | Length | Sheet |
|---|---|---|---|
| α-helix | 190-192 | 3 | |
| α-helix | 193-198 | 6 | |
| α-helix | 199-205 | 7 | |
| β-strand | 207-210 | 4 | 1 |
| α-helix | 216-231 | 16 | |
| β-strand | 236-237 | 2 | 1 |
| β-strand | 240 | 1 | 2 |
| α-helix | 248-250 | 3 | |
| β-strand | 252 | 1 | 3 |
| β-strand | 255-259 | 5 | 1 |
| α-helix | 267-281 | 15 | |
| β-strand | 292-295 | 4 | 1 |
| α-helix | 296-297 | 2 | |
| β-strand | 298-304 | 7 | 1 |
| β-strand | 308-313 | 6 | 3 |
| β-strand | 322-329 | 8 | 1 |
| β-strand | 331 | 1 | 4 |
| α-helix | 336-339 | 4 | |
| β-strand | 340 | 1 | 3 |
| β-strand | 343-345 | 3 | 3 |
| β-strand | 354-356 | 3 | 3 |
| β-strand | 359 | 1 | 4 |
| β-strand | 362-367 | 6 | 1 |
| β-strand | 374-379 | 6 | 3 |
| β-strand | 382-392 | 11 | 1 |
| α-helix | 393-404 | 12 |
| Element | Residues | Length | Sheet |
|---|---|---|---|
| α-helix | 526-528 | 3 | |
| β-strand | 531 | 1 | 2 |
| α-helix | 532 | 1 | |
| α-helix | 539 | 1 | |
| β-strand | 540-541 | 2 | 1 |
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|---|---|---|---|---|
| Egl nine homolog 1 | A | protein | 227 | Homo sapiens | Q9GZT9 (AlphaFold model) |
| Hypoxia-inducible Factor-2alpha | B | protein | 20 | Homo sapiens | Q99814 (AlphaFold model) |
>8RUT_1 Egl nine homolog 1 (chains A) PNGQTKPLPALKLALEYIVPCMNKHGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQL VSQKSDSSKDIRGDKITWIEGKEPGCETIGLLMSSMDDLIRHCNGKLGSYKINGRTKAMV ACYPGNGTGYVRHVDNPNGDGRCVTCIYYLNKDWDAKVSGGILRIFPEGKAQFADIEPKF DRLLFFWSDRRNPHEVQPAYATRYAIVVWYFDADERARAKVKYLTGE
>8RUT_2 Hypoxia-inducible Factor-2alpha (chains B) ELDLETLAPYIPMDGEDFQL
Water and common crystallization additives (ACT) are not listed.
HIF prolyl hydroxylase 2 (PHD2) T387V variant bound to Hypoxia-inducible Factor 2alpha (HIF-2alpha. Fiorini, G., Schofield, C.J. To be published.
Other PDB entries of the same protein (UniProt Q9GZT9 (AlphaFold model), which also has an AlphaFold model), best resolution first:
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