9B1D: Native SWR1
Cryo-EM structure of native SWR1 bound to DNA (composite structure). Determined by electron microscopy at 3.3 Å resolution. Released 9 Oct 2024.
- Method
- Electron microscopy
- Resolution
- 3.3 Å
- Organisms
- Saccharomyces cerevisiae W303, synthetic construct
- Chains
- 12
- Atoms
- 33,147
- Mol. weight
- 875.08 kDa
- Ligands
- AGS, ADP, ZN, MG
- Released
- 9 Oct 2024
Explore 9B1D in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
9B1D contains 207 α-helices and 208 β-strands across 10 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain A: 40 helices, 19 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 686-689 | 4 | |
| α-helix | 698-712 | 15 | |
| β-strand | 717-719 | 3 | 1 |
| α-helix | 721-722 | 2 | |
| α-helix | 727-741 | 15 | |
| β-strand | 748-751 | 4 | 1 |
| α-helix | 754-767 | 14 | |
| β-strand | 773-775 | 3 | 1 |
| α-helix | 780-787 | 8 | |
| β-strand | 798-801 | 4 | 1 |
| α-helix | 803-813 | 11 | |
| β-strand | 818-823 | 6 | 1 |
| α-helix | 826-829 | 4 | |
| α-helix | 835-841 | 7 | |
| β-strand | 845-851 | 7 | 1 |
| α-helix | 860-870 | 11 | |
| β-strand | 874-876 | 3 | 2 |
| β-strand | 879-881 | 3 | 2 |
| α-helix | 887-890 | 4 | |
| α-helix | 891-895 | 5 | |
| α-helix | 896-903 | 8 | |
| α-helix | 912-925 | 14 | |
| α-helix | 934-937 | 4 | |
| β-strand | 944-951 | 8 | 3 |
| α-helix | 955-969 | 15 | |
| α-helix | 983-994 | 12 | |
| α-helix | 996-998 | 3 | |
| α-helix | 1001-1003 | 3 | |
| β-strand | 1006 | 1 | 4 |
| β-strand | 1008-1009 | 2 | 5 |
| α-helix | 1016-1018 | 3 | |
| α-helix | 1019-1035 | 17 | |
| α-helix | 1050-1053 | 4 | |
| α-helix | 1056-1064 | 9 | |
| β-strand | 1066 | 1 | 6 |
| α-helix | 1068-1089 | 22 | |
| α-helix | 1095-1097 | 3 | |
| α-helix | 1100-1130 | 31 | |
| α-helix | 1138-1145 | 8 | |
| α-helix | 1159-1162 | 4 | |
| α-helix | 1166-1172 | 7 | |
| α-helix | 1174-1180 | 7 | |
| β-strand | 1187-1188 | 2 | 5 |
| α-helix | 1191-1195 | 5 | |
| α-helix | 1207-1219 | 13 | |
| α-helix | 1225-1232 | 8 | |
| β-strand | 1233 | 1 | 4 |
| α-helix | 1239-1243 | 5 | |
| α-helix | 1246-1261 | 16 | |
| β-strand | 1265-1269 | 5 | 3 |
| α-helix | 1272-1284 | 13 | |
| β-strand | 1289-1291 | 3 | 3 |
| α-helix | 1298-1310 | 13 | |
| β-strand | 1316-1320 | 5 | 3 |
| α-helix | 1322-1325 | 4 | |
| β-strand | 1335-1338 | 4 | 3 |
| α-helix | 1345-1355 | 11 | |
| β-strand | 1364-1371 | 8 | 3 |
| α-helix | 1375-1394 | 20 | |
Chain B: 4 helices, 4 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 238-278 | 41 | |
| β-strand | 286-296 | 11 | 7 |
| α-helix | 299-315 | 17 | |
| β-strand | 588-598 | 11 | 7 |
| β-strand | 602 | 1 | 7 |
| α-helix | 606-614 | 9 | |
| β-strand | 635-640 | 6 | 8 |
| α-helix | 658-664 | 7 | |
Chain C: 24 helices, 23 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 4-5 | 2 | |
| β-strand | 6-10 | 5 | 9 |
| β-strand | 15-19 | 5 | 9 |
| β-strand | 32-34 | 3 | 10 |
| β-strand | 40-42 | 3 | 10 |
| α-helix | 43-48 | 6 | |
| β-strand | 56-58 | 3 | 10 |
| β-strand | 61 | 1 | 11 |
| β-strand | 66 | 1 | 11 |
| α-helix | 69-81 | 13 | |
| β-strand | 98-101 | 4 | 9 |
| α-helix | 109-117 | 9 | |
| α-helix | 118-122 | 5 | |
| β-strand | 127-130 | 4 | 9 |
| α-helix | 133-136 | 4 | |
| α-helix | 137-142 | 6 | |
| β-strand | 147-151 | 5 | 12 |
| β-strand | 187-193 | 7 | 12 |
| β-strand | 198-204 | 7 | 12 |
| β-strand | 207-208 | 2 | 12 |
| β-strand | 214-216 | 3 | 12 |
| α-helix | 220-234 | 15 | |
| α-helix | 242-251 | 10 | |
| α-helix | 260-265 | 6 | |
| β-strand | 272-275 | 4 | 13 |
| α-helix | 276-277 | 2 | |
| β-strand | 278 | 1 | 14 |
| β-strand | 282 | 1 | 14 |
| β-strand | 286-288 | 3 | 13 |
| α-helix | 295-298 | 4 | |
| β-strand | 303-306 | 4 | 13 |
| α-helix | 309-312 | 4 | |
| α-helix | 314-317 | 4 | |
| α-helix | 320-323 | 4 | |
| α-helix | 330-340 | 11 | |
| α-helix | 346-351 | 6 | |
| β-strand | 353-356 | 4 | 12 |
| α-helix | 359-361 | 3 | |
| α-helix | 365-376 | 12 | |
| β-strand | 378 | 1 | 15 |
| β-strand | 384-388 | 5 | 12 |
| α-helix | 393-404 | 12 | |
| α-helix | 407-412 | 6 | |
| β-strand | 414-415 | 2 | 9 |
| α-helix | 416-421 | 6 | |
| α-helix | 424-426 | 3 | |
| α-helix | 427-431 | 5 | |
Chain D: 12 helices, 4 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 5-7 | 3 | 16 |
| β-strand | 18-21 | 4 | 17 |
| α-helix | 92-106 | 15 | |
| α-helix | 110-115 | 6 | |
| α-helix | 116-124 | 9 | |
| α-helix | 128-133 | 6 | |
| α-helix | 169-178 | 10 | |
| α-helix | 193-201 | 9 | |
| α-helix | 208-213 | 6 | |
| α-helix | 219-222 | 4 | |
| α-helix | 223-227 | 5 | |
| α-helix | 239-240 | 2 | |
| β-strand | 254-256 | 3 | 17 |
| β-strand | 262-263 | 2 | 17 |
| α-helix | 266-271 | 6 | |
| α-helix | 272-276 | 5 | |
Chain E: 22 helices, 26 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 24 | 1 | 18 |
| β-strand | 35 | 1 | 19 |
| β-strand | 41 | 1 | 19 |
| β-strand | 44-45 | 2 | 20 |
| β-strand | 48-49 | 2 | 20 |
| α-helix | 52-67 | 16 | |
| β-strand | 70 | 1 | 21 |
| β-strand | 74-79 | 6 | 22 |
| α-helix | 85-96 | 12 | |
| β-strand | 102-106 | 5 | 22 |
| α-helix | 107-110 | 4 | |
| α-helix | 117-127 | 11 | |
| β-strand | 129-149 | 21 | 16 |
| β-strand | 166-171 | 6 | 16 |
| β-strand | 176-181 | 6 | 16 |
| α-helix | 183-191 | 9 | |
| β-strand | 198-203 | 6 | 16 |
| β-strand | 208-215 | 8 | 16 |
| α-helix | 216-218 | 3 | |
| β-strand | 224 | 1 | 7 |
| α-helix | 227-228 | 2 | |
| β-strand | 229-230 | 2 | 16 |
| α-helix | 231-234 | 4 | |
| β-strand | 238-248 | 11 | 16 |
| α-helix | 249-257 | 9 | |
| α-helix | 265-272 | 8 | |
| α-helix | 282-297 | 16 | |
| β-strand | 301-305 | 5 | 16 |
| β-strand | 307-311 | 5 | 22 |
| α-helix | 313-315 | 3 | |
| α-helix | 318-328 | 11 | |
| β-strand | 335-340 | 6 | 22 |
| β-strand | 342 | 1 | 23 |
| α-helix | 345 | 1 | |
| β-strand | 346 | 1 | 24 |
| α-helix | 347 | 1 | |
| β-strand | 354 | 1 | 24 |
| α-helix | 361-364 | 4 | |
| β-strand | 367-372 | 6 | 22 |
| α-helix | 377-390 | 14 | |
| β-strand | 395 | 1 | 25 |
| α-helix | 397-409 | 13 | |
| α-helix | 412-417 | 6 | |
| α-helix | 419-428 | 10 | |
| β-strand | 434 | 1 | 25 |
| α-helix | 436-445 | 10 | |
| β-strand | 447 | 1 | 26 |
| α-helix | 449-456 | 8 | |
Chain F: 21 helices, 26 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 20 | 1 | 27 |
| β-strand | 31 | 1 | 28 |
| α-helix | 36 | 1 | |
| β-strand | 37 | 1 | 28 |
| α-helix | 38 | 1 | |
| β-strand | 40-41 | 2 | 29 |
| β-strand | 44-45 | 2 | 29 |
| α-helix | 48-63 | 16 | |
| β-strand | 66 | 1 | 18 |
| β-strand | 70-74 | 5 | 26 |
| α-helix | 81-92 | 12 | |
| β-strand | 98-102 | 5 | 26 |
| α-helix | 103-105 | 3 | |
| α-helix | 113-122 | 10 | |
| β-strand | 125-148 | 24 | 7 |
| β-strand | 154-161 | 8 | 7 |
| β-strand | 166-171 | 6 | 7 |
| α-helix | 173-182 | 10 | |
| β-strand | 188-193 | 6 | 7 |
| β-strand | 199-204 | 6 | 7 |
| β-strand | 207 | 1 | 7 |
| β-strand | 221 | 1 | 7 |
| α-helix | 223-225 | 3 | |
| β-strand | 230-240 | 11 | 7 |
| α-helix | 241-249 | 9 | |
| α-helix | 253-259 | 7 | |
| α-helix | 267-283 | 17 | |
| β-strand | 286-290 | 5 | 7 |
| β-strand | 292-296 | 5 | 26 |
| α-helix | 298-300 | 3 | |
| α-helix | 303-312 | 10 | |
| β-strand | 320-325 | 6 | 26 |
| β-strand | 330-331 | 2 | 30 |
| α-helix | 332 | 1 | |
| β-strand | 338-339 | 2 | 30 |
| α-helix | 345-349 | 5 | |
| β-strand | 351-355 | 5 | 26 |
| α-helix | 361-374 | 14 | |
| β-strand | 379 | 1 | 31 |
| α-helix | 381-393 | 13 | |
| α-helix | 396-412 | 17 | |
| β-strand | 418 | 1 | 31 |
| α-helix | 420-429 | 10 | |
| β-strand | 431 | 1 | 32 |
| α-helix | 433-442 | 10 | |
| α-helix | 444-446 | 3 | |
| β-strand | 448 | 1 | 33 |
Chain G: 20 helices, 26 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 24 | 1 | 34 |
| β-strand | 35 | 1 | 35 |
| β-strand | 41 | 1 | 35 |
| β-strand | 44-45 | 2 | 36 |
| β-strand | 48-49 | 2 | 36 |
| α-helix | 52-67 | 16 | |
| β-strand | 70 | 1 | 27 |
| β-strand | 73-79 | 7 | 32 |
| α-helix | 85-96 | 12 | |
| β-strand | 102-106 | 5 | 32 |
| α-helix | 107-110 | 4 | |
| α-helix | 117-128 | 12 | |
| β-strand | 130-151 | 22 | 7 |
| β-strand | 161-172 | 12 | 7 |
| β-strand | 175-181 | 7 | 7 |
| α-helix | 185-191 | 7 | |
| β-strand | 198-203 | 6 | 7 |
| β-strand | 209-215 | 7 | 7 |
| α-helix | 216-218 | 3 | |
| β-strand | 224 | 1 | 8 |
| α-helix | 228 | 1 | |
| β-strand | 229-230 | 2 | 7 |
| α-helix | 231-234 | 4 | |
| β-strand | 238-248 | 11 | 7 |
| α-helix | 249-257 | 9 | |
| α-helix | 265-272 | 8 | |
| α-helix | 282-297 | 16 | |
| β-strand | 301-304 | 4 | 7 |
| β-strand | 307-311 | 5 | 32 |
| α-helix | 313-315 | 3 | |
| α-helix | 318-327 | 10 | |
| β-strand | 335-340 | 6 | 32 |
| β-strand | 342 | 1 | 33 |
| β-strand | 344-346 | 3 | 37 |
| α-helix | 347 | 1 | |
| β-strand | 354-357 | 4 | 37 |
| α-helix | 361-364 | 4 | |
| β-strand | 367-372 | 6 | 32 |
| α-helix | 377-390 | 14 | |
| β-strand | 395 | 1 | 38 |
| α-helix | 397-409 | 13 | |
| α-helix | 412-428 | 17 | |
| β-strand | 434 | 1 | 38 |
| α-helix | 436-445 | 10 | |
| β-strand | 447 | 1 | 39 |
| α-helix | 449-454 | 6 | |
Chain H: 22 helices, 27 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 20 | 1 | 40 |
| β-strand | 31 | 1 | 41 |
| α-helix | 36 | 1 | |
| β-strand | 37 | 1 | 41 |
| α-helix | 38 | 1 | |
| β-strand | 40-41 | 2 | 42 |
| β-strand | 44-45 | 2 | 42 |
| α-helix | 48-63 | 16 | |
| β-strand | 66 | 1 | 34 |
| β-strand | 70-74 | 5 | 39 |
| α-helix | 81-92 | 12 | |
| β-strand | 98-102 | 5 | 39 |
| α-helix | 103-106 | 4 | |
| α-helix | 113-123 | 11 | |
| β-strand | 125-146 | 22 | 8 |
| β-strand | 155-162 | 8 | 8 |
| β-strand | 165-171 | 7 | 8 |
| α-helix | 173-182 | 10 | |
| β-strand | 188-193 | 6 | 8 |
| β-strand | 199-204 | 6 | 8 |
| α-helix | 206-211 | 6 | |
| β-strand | 214 | 1 | 15 |
| β-strand | 221 | 1 | 8 |
| β-strand | 222 | 1 | 6 |
| α-helix | 223-225 | 3 | |
| β-strand | 230-240 | 11 | 8 |
| α-helix | 241-249 | 9 | |
| α-helix | 253-259 | 7 | |
| α-helix | 267-283 | 17 | |
| β-strand | 286-290 | 5 | 8 |
| β-strand | 292-296 | 5 | 39 |
| α-helix | 298-300 | 3 | |
| β-strand | 302 | 1 | 43 |
| α-helix | 303-312 | 10 | |
| β-strand | 320-325 | 6 | 39 |
| β-strand | 330-331 | 2 | 44 |
| α-helix | 332 | 1 | |
| β-strand | 333 | 1 | 43 |
| β-strand | 338-339 | 2 | 44 |
| α-helix | 345-349 | 5 | |
| β-strand | 351-355 | 5 | 39 |
| α-helix | 361-374 | 14 | |
| α-helix | 381-393 | 13 | |
| α-helix | 396-412 | 17 | |
| α-helix | 420-429 | 10 | |
| β-strand | 431 | 1 | 45 |
| α-helix | 433-442 | 10 | |
| α-helix | 444-446 | 3 | |
| β-strand | 448 | 1 | 46 |
2 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| Helicase SWR1 | A | protein | 1544 | Saccharomyces cerevisiae W303 | Q05471 (AlphaFold model) |
| Vacuolar protein sorting-associated protein 72 | B | protein | 795 | Saccharomyces cerevisiae W303 | Q03388 (AlphaFold model) |
| Actin-like protein ARP6 | C | protein | 438 | Saccharomyces cerevisiae W303 | Q12509 (AlphaFold model) |
| Vacuolar protein sorting-associated protein 71 | D | protein | 280 | Saccharomyces cerevisiae W303 | Q03433 (AlphaFold model) |
| RuvB-like protein 1 | E, G, I | protein | 837 | Saccharomyces cerevisiae W303 | Q03940 |
| RuvB-like protein 2 | F, H, J | protein | 471 | Saccharomyces cerevisiae W303 | Q12464 |
| DNA (147-mer) | Y | DNA | 147 | synthetic construct | |
| DNA (147-mer) | Z | DNA | 147 | synthetic construct | |
Sequence of entity 1 (A), FASTA
>9B1D_1 Helicase SWR1 (chains A)
MTTSRKSHAKDKKAGGEQDLADLKFRYDLLTNELFHLREFVSLVDYDPTHFNDSESFQKF
LRETHLSLEERGEKFTDDVAKKGTNGDLTRRRRNLRTSTVVSSETTNEKKGDIELKLESI
APLVRNKCEELKYKLSDHSNRKSIVPQKRPIQHLKKREAAKSLKFKSERKENPLPLHEHI
AEERYDHIAKVEEPSEAFTIKCPSDDSSFENTSEHYSDNFYFTTSSEEEDIKKKRGRKKK
KPRIKLVVHPPKQTITNPLHVVKPGYESLHEYIASFKSLEDDLTLEEYNKYIDEQRRLLS
RLKKGIENGALKYDKETDSLQPITSKEIKTIITYKPDPISYFYKQQDLQIHTDHLINQGI
HMSKLFRSSTKARIARAKKVSQMIEQHFKHVAGAEERKAKEEERHKKSLARFAVQAVKKR
WNMAEKAYRILRKDEEEQLKRIEGKQHLSKMLEKSTQLLEAQLNQVNDDGRSSTPSSDSN
DVLSESDDDMDDELSTSSDEDEEVDADVGLENSPASTEATPTDESLNLIQLKEKYGHFNG
SSTVYDSRNKDEKFPTLDKHESSSSESSVMTGEESSIYSSSENESQNENDRESDDKTPSV
GLSALFGKGEESDGDLDLDDSEDFTVNSSSVEGEELEKDQVDNSAATFERAGDFVHTQNE
NRDDIKDVEEDAETKVQEEQLSVVDVPVPSLLRGNLRTYQKQGLNWLASLYNNHTNGILA
DEMGLGKTIQTISLLAYLACEKENWGPHLIVVPTSVLLNWEMEFKRFAPGFKVLTYYGSP
QQRKEKRKGWNKPDAFHVCIVSYQLVVQDQHSFKRKRWQYMVLDEAHNIKNFRSTRWQAL
LNFNTQRRLLLTGTPLQNNLAELWSLLYFLMPQTVIDGKKVSGFADLDAFQQWFGRPVDK
IIETGQNFGQDKETKKTVAKLHQVLRPYLLRRLKADVEKQMPAKYEHIVYCKLSKRQRFL
YDDFMSRAQTKATLASGNFMSIVNCLMQLRKVCNHPNLFEVRPILTSFVLEHCVASDYKD
VERTLLKLFKKNNQVNRVDLDFLNLVFTLNDKDLTSYHAEEISKLTCVKNFVEEVNKLRE
TNKQLQEEFGEASFLNFQDANQYFKYSNKQKLEGTVDMLNFLKMVNKLRCDRRPIFGKNL
IDLLTKDRRVKYDKSSIIDNELIKPLQTRVLDNRKIIDTFAVLTPSAVSLDMRKLALGLN
DDSSVGENTRLKVMQNCFEVSNPLHQLQTKLTIAFPDKSLLQYDCGKLQKLAILLQQLKD
NGHRALIFTQMTKVLDVLEQFLNYHGYLYMRLDGATKIEDRQILTERFNTDSRITVFILS
SRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNIL
KKANQKRQLDNVVIQEGDFTTDYFSKLSVRDLLGSELPENASGGDKPLIADADVAAKDPR
QLERLLAQAEDEDDVKAANLAMREVEIDNDDFDESTEKKAANEEEENHAELDEYEGTAHV
DEYMIRFIANGYYYGSGGSGDYKDHDGDYKDHDIDYKDDDDKGS
Sequence of entity 2 (B), FASTA
>9B1D_2 Vacuolar protein sorting-associated protein 72 (chains B)
MSDEGADKSLDTNTEFIIQTRSRRSNAGNKLQKLLEQELRDIESTKRQISSYKNGNDDEE
DEIGLLFQEDEDDEDFEMMAKDDDDEGEEKEDETQSIRKEPSQASSEQAADDLMFSSSES
EDSSNENDEDAEEKEIRRQELLSRKKRNKRLQKGPVVIKKQKPKPKSGEAIPRSHHTHEQ
LNAETLLLNTRRTSKRSSVMENTMKVYEKLSKAEKKRKIIQERIRKHKEQESQHMLTQEE
RLRIAKETEKLNILSLDKFKEQEVWKKENRLALQKRQKQKFQPNETILQFLSTAWLMTPA
MELEDRKYWQEQLNKRDKKKKKYPRKPKKNLNLGKQDASDDKKRESEESIKNDGDVNSLG
ENSSSVHNQKRIEETSTNDTVEGESSPDAAVSRVNSDELKPTALPDVTLDAIANKQSTVD
EAPNSQPQKNIITNEQKITNVGEPIQNLHNEEIKDEMVSALESRENTFENSSPAAQVVSQ
RDNSATPTPSNSTGTEDTILISPDTDIKGEPEPCLKTEGIENLSHNVPQETKSNTDVSFL
KQVTFTDHPQVAIIDTEESPSKKDTANVDESSAENSLSTQTYEGPEQLTSRNFVTLYDFP
NAPPNLKDFNTNLFGDRWSYTNGLSATQRPQDMKTVFHSILPSPPQSSVPSPTVDISLDL
SALANFPSFGEYDKKIVHQINTEINKDLEIKIKTQPPTGVFLANGIRKKCLITNKECQYF
DPRTGVPYSDVEAYKIIQRIQDPISKEEGRSDIKRDETTNEDSDDQVRFKWFGFKNGGIY
LDLSQRPAKGVPEGF
Sequence of entity 3 (C), FASTA
>9B1D_3 Actin-like protein ARP6 (chains C)
METPPIVIDNGSYEIKFGPSTNKKPFRALNALAKDKFGTSYLSNHIKNIKDISSITFRRP
HELGQLTLWELESCIWDYCLFNPSEFDGFDLKEGKGHHLVASESCMTLPELSKHADQVIF
EEYEFDSLFKSPVAVFVPFTKSYKGEMRTISGKDEDIDIVRGNSDSTNSTSSESKNAQDS
GSDYHDFQLVIDSGFNCTWIIPVLKGIPYYKAVKKLDIGGRFLTGLLKETLSFRHYNMMD
ETILVNNIKEQCLFVSPVSYFDSFKTKDKHALEYVLPDFQTSFLGYVRNPRKENVPLPED
AQIITLTDELFTIPETFFHPEISQITKPGIVEAILESLSMLPEIVRPLMVGNIVCTGGNF
NLPNFAQRLAAELQRQLPTDWTCHVSVPEGDCALFGWEVMSQFAKTDSYRKARVTREEYY
EHGPDWCTKHRFGYQNWI
Sequence of entity 4 (D), FASTA
>9B1D_4 Vacuolar protein sorting-associated protein 71 (chains D)
MKALVEEIDKKTYNPDIYFTSLDPQARRYTSKKINKQGTISTSRPVKRINYSLADLEARL
YTSRSEGDGNSISRQDDRNSKNSHSFEERYTQQEILQSDRRFMELNTENFSDLPNVPTLL
SDLTGVPRDRIESTTKPISQTSDGLSALMGGSSFVKEHSKYGHGWVLKPETLREIQLSYK
STKLPKPKRKNTNRIVALKKVLSSKRNLHSFLDSALLNLMDKNVIYHNVYNKRYFKVLPL
ITTCSICGGYDSISSCVNCGNKICSVSCFKLHNETRCRNR
Sequence of entity 5 (E, G, I), FASTA
>9B1D_5 RuvB-like protein 1 (chains E, G, I)
MVAISEVKENPGVNSSNSGAVTRTAAHTHIKGLGLDESGVAKRVEGGFVGQIEAREACGV
IVDLIKAKKMSGRAILLAGGPSTGKTALALAISQELGPKVPFCPLVGSELYSVEVKKTET
LMENFRRAIGLRIKETKEVYEGEVTELTPEDAENPLGGYGKTISHVIVGLKSAKGTKTLR
LDPTIYESIQREKVSIGDVIYIEANTGAVKRVGRSDAYATEFDLETEEYVPLPKGEVHKK
KEIVQDVTLHDLDVANARPQGGQDVISMMGQLLKPKKTEITEKLRQEVNKVVAKYIDQGV
AELIPGVLFIDEVNMLDIEIFTYLNKALESNIAPVVVLASNRGMTTVRGTEDVISPHGVP
PDLIDRLLIVRTLPYDKDEIRTIIERRATVERLQVESSALDLLATMGTETSLRYALQLLA
PCGILAQTSNRKEIVVNDVNEAKLLFLDAKRSTKILETSANYLSGGGASMKIEEGKLVIW
INGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGY
AQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWE
EIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKA
GLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTF
KGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEE
LAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTN
Sequence of entity 6 (F, H, J), FASTA
>9B1D_6 RuvB-like protein 2 (chains F, H, J)
MSIQTSDPNETSDLKSLSLIAAHSHITGLGLDENLQPRPTSEGMVGQLQARRAAGVILKM
VQNGTIAGRAVLVAGPPSTGKTALAMGVSQSLGKDVPFTAIAGSEIFSLELSKTEALTQA
FRKSIGIKIKEETELIEGEVVEIQIDRSITGGHKQGKLTIKTTDMETIYELGNKMIDGLT
KEKVLAGDVISIDKASGKITKLGRSFARSRDYDAMGADTRFVQCPEGELQKRKTVVHTVS
LHEIDVINSRTQGFLALFTGDTGEIRSEVRDQINTKVAEWKEEGKAEIVPGVLFIDEVHM
LDIECFSFINRALEDEFAPIVMMATNRGVSKTRGTNYKSPHGLPLDLLDRSIIITTKSYN
EQEIKTILSIRAQEEEVELSSDALDLLTKTGVETSLRYSSNLISVAQQIAMKRKNNTVEV
EDVKRAYLLFLDSARSVKYVQENESQYIDDQGNVQISIAKSADPDAMDTTE
Sequence of entity 7 (Y), FASTA
>9B1D_7 DNA (147-MER) (chains Y)
CTGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGCAAGCTCTAGCACCGCTTAA
ACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCA
GGCACGTGTCAGATATATACATCCTGT
Sequence of entity 8 (Z), FASTA
>9B1D_8 DNA (147-MER) (chains Z)
ACAGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAA
AACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTTGCTACGACCAATTG
AGCGGCCTCGGCACCGGGATTCTCCAG
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| AGS | Phosphothiophosphoric acid-adenylate ester | C10 H16 N5 O12 P3 S | 4 |
| ADP | Adenosine-5'-diphosphate | C10 H15 N5 O10 P2 | 4 |
| ZN | Zinc ion | Zn | 2 |
| MG | Magnesium ion | Mg | 8 |
Primary citation
Molecular basis of global promoter sensing and nucleosome capture by the SWR1 chromatin remodeler. Louder, R.K., Park, G., Ye, Z. et al. Cell (2024) 187:6849-6864.e18. DOI 10.1016/j.cell.2024.09.007 · PubMed
Other PDB entries of the same protein (UniProt Q05471 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 4M6B 1.78 Å, Crystal structure of yeast Swr1-Z domain in complex with H2A.Z-H2B dimer
- 5I9E 2.8 Å, Crystal structure of a nuclear actin ternary complex
- 8QYV 3.5 Å, SWR1-hexasome complex
- 6GEJ 3.6 Å, Chromatin remodeller-nucleosome complex at 3.6 A resolution.
- 6GEN 3.6 Å, Chromatin remodeller-nucleosome complex at 4.5 A resolution.
- 8QKU 3.8 Å, SWR1-nucleosome complex in configuration 1
- 8QZ0 3.8 Å, SWR1-hexasome-dimer complex
- 9B1E 4.4 Å, Cryo-EM structure of native SWR1 bound to nucleosome (composite structure)
- 9FBW 4.4 Å, SWR1 lacking Swc5 subunit in complex with hexasome
- 8QKV 4.7 Å, SWR1-nucleosome complex in configuration 2
Browse structure collections
About this viewer
MolViewer shows 9B1D directly in your browser with nothing to install. Switch between cartoon, ball-and-stick, spacefill and surface views, color by chain, secondary structure or B-factor, measure distances, angles and dihedrals, and share or embed the view.