9I2E: NMT1-NAC bound human ribosome
NMT1-NAC bound human ribosome (combined translational states). Determined by electron microscopy at 2.95 Å resolution. Released 4 Feb 2026.
- Method
- Electron microscopy
- Resolution
- 2.95 Å
- Organism
- Homo sapiens
- Chains
- 86
- Atoms
- 230,824
- Mol. weight
- 4084.77 kDa
- Ligands
- ZN, MG
- Released
- 4 Feb 2026
Explore 9I2E in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
9I2E contains 569 α-helices and 642 β-strands across 81 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain CB: 39 helices, 47 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 6-10 | 5 | |
| α-helix | 16-18 | 3 | |
| β-strand | 19 | 1 | 1 |
| β-strand | 22-26 | 5 | 1 |
| α-helix | 32-43 | 12 | |
| α-helix | 63-66 | 4 | |
| β-strand | 74-79 | 6 | 1 |
| α-helix | 83-86 | 4 | |
| β-strand | 98-103 | 6 | 1 |
| α-helix | 113-121 | 9 | |
| β-strand | 124-130 | 7 | 1 |
| β-strand | 134 | 1 | 1 |
| α-helix | 137-148 | 12 | |
| α-helix | 151 | 1 | |
| β-strand | 152-158 | 7 | 1 |
| α-helix | 160-162 | 3 | |
| α-helix | 163-167 | 5 | |
| α-helix | 171-191 | 21 | |
| β-strand | 212-213 | 2 | 1 |
| β-strand | 214-216 | 3 | 2 |
| β-strand | 221-223 | 3 | 2 |
| α-helix | 225-235 | 11 | |
| α-helix | 248-260 | 13 | |
| β-strand | 265-266 | 2 | 3 |
| β-strand | 273-274 | 2 | 3 |
| β-strand | 278 | 1 | 4 |
| β-strand | 284 | 1 | 4 |
| β-strand | 287 | 1 | 3 |
| α-helix | 288 | 1 | |
| α-helix | 289-294 | 6 | |
| α-helix | 295-306 | 12 | |
| α-helix | 309-319 | 11 | |
| α-helix | 326-328 | 3 | |
| α-helix | 333-343 | 11 | |
| β-strand | 345 | 1 | 2 |
| α-helix | 346-355 | 10 | |
| α-helix | 361-372 | 12 | |
| β-strand | 373 | 1 | 5 |
| α-helix | 380-387 | 8 | |
| β-strand | 395-402 | 8 | 6 |
| β-strand | 411-418 | 8 | 6 |
| β-strand | 420-422 | 3 | 7 |
| β-strand | 426-430 | 5 | 6 |
| β-strand | 442-446 | 5 | 6 |
| β-strand | 450-454 | 5 | 6 |
| β-strand | 457-461 | 5 | 6 |
| β-strand | 463-465 | 3 | 7 |
| β-strand | 469-472 | 4 | 6 |
| α-helix | 476-478 | 3 | |
| β-strand | 480 | 1 | 8 |
| β-strand | 482 | 1 | 8 |
| β-strand | 483-486 | 4 | 6 |
| β-strand | 494 | 1 | 5 |
| β-strand | 505-511 | 7 | 9 |
| α-helix | 514-516 | 3 | |
| α-helix | 517-530 | 14 | |
| β-strand | 535-538 | 4 | 9 |
| β-strand | 544-548 | 5 | 9 |
| α-helix | 551-560 | 10 | |
| α-helix | 561-565 | 5 | |
| β-strand | 570-573 | 4 | 9 |
| β-strand | 580-583 | 4 | 10 |
| β-strand | 593-594 | 2 | 11 |
| β-strand | 600-608 | 9 | 11 |
| α-helix | 609-610 | 2 | |
| α-helix | 611-618 | 8 | |
| α-helix | 628-639 | 12 | |
| α-helix | 643-647 | 5 | |
| β-strand | 649-652 | 4 | 11 |
| α-helix | 654-656 | 3 | |
| β-strand | 661-664 | 4 | 11 |
| α-helix | 672-688 | 17 | |
| β-strand | 697 | 1 | 10 |
| β-strand | 700-709 | 10 | 11 |
| α-helix | 718-720 | 3 | |
| α-helix | 722-735 | 14 | |
| β-strand | 738-743 | 6 | 10 |
| β-strand | 744-751 | 8 | 12 |
| α-helix | 756-765 | 10 | |
| β-strand | 769-774 | 6 | 12 |
| β-strand | 782-789 | 8 | 12 |
| α-helix | 796-804 | 9 | |
| β-strand | 809-812 | 4 | 12 |
| β-strand | 817-819 | 3 | 10 |
| α-helix | 830-842 | 13 | |
| α-helix | 848-850 | 3 | |
Chain CD: 3 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 209-211 | 3 | |
| α-helix | 219-220 | 2 | |
| α-helix | 284-291 | 8 | |
Chain La: 9 helices, 8 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 3-5 | 3 | |
| α-helix | 7-10 | 4 | |
| α-helix | 42-48 | 7 | |
| β-strand | 53 | 1 | 173 |
| α-helix | 65-68 | 4 | |
| β-strand | 72-73 | 2 | 52 |
| α-helix | 78-81 | 4 | |
| α-helix | 84-92 | 9 | |
| β-strand | 97-98 | 2 | 147 |
| α-helix | 99 | 1 | |
| β-strand | 100-102 | 3 | 53 |
| α-helix | 103-106 | 4 | |
| β-strand | 110-111 | 2 | 52 |
| β-strand | 123-126 | 4 | 53 |
| β-strand | 128-129 | 2 | 52 |
| α-helix | 131-140 | 10 | |
| β-strand | 143-146 | 4 | 53 |
Chain LA: 10 helices, 20 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 3-5 | 3 | |
| α-helix | 14-16 | 3 | |
| β-strand | 18 | 1 | 61 |
| α-helix | 30-32 | 3 | |
| α-helix | 34-38 | 5 | |
| β-strand | 41-50 | 10 | 62 |
| α-helix | 51 | 1 | |
| β-strand | 57-64 | 8 | 62 |
| β-strand | 71-77 | 7 | 62 |
| α-helix | 78 | 1 | |
| β-strand | 79 | 1 | 63 |
| β-strand | 83 | 1 | 64 |
| β-strand | 87-90 | 4 | 62 |
| β-strand | 101-103 | 3 | 62 |
| β-strand | 112-113 | 2 | 65 |
| β-strand | 116 | 1 | 66 |
| β-strand | 126 | 1 | 66 |
| β-strand | 134-140 | 7 | 65 |
| α-helix | 142-144 | 3 | |
| β-strand | 145-150 | 6 | 65 |
| β-strand | 154-159 | 6 | 65 |
| β-strand | 163-165 | 3 | 62 |
| β-strand | 166 | 1 | 65 |
| β-strand | 169 | 1 | 63 |
| α-helix | 174-176 | 3 | |
| α-helix | 182-190 | 9 | |
| β-strand | 193 | 1 | 61 |
| β-strand | 224-225 | 2 | 67 |
| α-helix | 229-230 | 2 | |
| β-strand | 237-238 | 2 | 67 |
Chain Lb: 7 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 12-18 | 7 | |
| α-helix | 22-24 | 3 | |
| α-helix | 37-48 | 12 | |
| α-helix | 49-51 | 3 | |
| α-helix | 54-73 | 20 | |
| α-helix | 92-100 | 9 | |
| α-helix | 106-116 | 11 | |
Chain LB: 17 helices, 19 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 14-16 | 3 | |
| α-helix | 33-35 | 3 | |
| α-helix | 40-41 | 2 | |
| β-strand | 42-43 | 2 | 71 |
| β-strand | 45-60 | 16 | 72 |
| β-strand | 70-80 | 11 | 72 |
| α-helix | 82-83 | 2 | |
| β-strand | 84-95 | 12 | 71 |
| β-strand | 98-106 | 9 | 71 |
| α-helix | 107 | 1 | |
| α-helix | 112-116 | 5 | |
| α-helix | 135-138 | 4 | |
| α-helix | 140-156 | 17 | |
| β-strand | 159-166 | 8 | 71 |
| α-helix | 168-170 | 3 | |
| α-helix | 178-179 | 2 | |
| β-strand | 180-186 | 7 | 71 |
| α-helix | 190-199 | 10 | |
| β-strand | 204-205 | 2 | 71 |
| α-helix | 207-209 | 3 | |
| β-strand | 216-222 | 7 | 72 |
| α-helix | 223-225 | 3 | |
| β-strand | 227-229 | 3 | 73 |
| α-helix | 231-234 | 4 | |
| α-helix | 237-241 | 5 | |
| β-strand | 270-272 | 3 | 73 |
| β-strand | 276-288 | 13 | 72 |
| β-strand | 292 | 1 | 74 |
| β-strand | 298 | 1 | 74 |
| β-strand | 320 | 1 | 75 |
| β-strand | 324 | 1 | 75 |
| β-strand | 330-334 | 5 | 72 |
| β-strand | 344-349 | 6 | 72 |
| β-strand | 364-368 | 5 | 72 |
| α-helix | 382-389 | 8 | |
| α-helix | 393-402 | 10 | |
Chain Lc: 4 helices, 4 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 10-21 | 12 | |
| β-strand | 26-29 | 4 | 76 |
| α-helix | 31-38 | 8 | |
| β-strand | 45-48 | 4 | 76 |
| α-helix | 54-67 | 14 | |
| β-strand | 70-72 | 3 | 76 |
| α-helix | 78-85 | 8 | |
| β-strand | 93-98 | 6 | 76 |
Chain LC: 21 helices, 12 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 7-11 | 5 | 87 |
| β-strand | 17-23 | 7 | 87 |
| α-helix | 24-25 | 2 | |
| α-helix | 26-28 | 3 | |
| α-helix | 34-44 | 11 | |
| β-strand | 65 | 1 | 88 |
| β-strand | 78 | 1 | 88 |
| β-strand | 90 | 1 | 88 |
| α-helix | 100-101 | 2 | |
| β-strand | 112 | 1 | 89 |
| α-helix | 117-131 | 15 | |
| α-helix | 134-139 | 6 | |
| β-strand | 152-154 | 3 | 87 |
| α-helix | 156-160 | 5 | |
| α-helix | 164-173 | 10 | |
| α-helix | 177-185 | 9 | |
| β-strand | 188-189 | 2 | 90 |
| α-helix | 190-191 | 2 | |
| β-strand | 201-202 | 2 | 90 |
| β-strand | 208-210 | 3 | 87 |
| α-helix | 217-220 | 4 | |
| β-strand | 228-229 | 2 | 87 |
| α-helix | 237-240 | 4 | |
| β-strand | 250-253 | 4 | 87 |
| α-helix | 254-264 | 11 | |
| α-helix | 279-282 | 4 | |
| α-helix | 289-293 | 5 | |
| α-helix | 296-301 | 6 | |
| α-helix | 303-305 | 3 | |
| α-helix | 311-314 | 4 | |
| α-helix | 316-317 | 2 | |
| α-helix | 322-328 | 7 | |
| α-helix | 331-365 | 35 | |
73 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| Elongation factor 2 | CB | protein | 858 | Homo sapiens | P13639 (AlphaFold model) |
| E-site tRNA | CC | RNA | 85 | Homo sapiens | |
| Isoform 2 of SERPINE1 mRNA-binding protein 1 | CD | protein | 402 | Homo sapiens | Q8NC51 (AlphaFold model) |
| 28S rRNA | L5 | RNA | 5070 | Homo sapiens | |
| 5S rRNA | L7 | RNA | 121 | Homo sapiens | |
| 5.8S rRNA | L8 | RNA | 157 | Homo sapiens | |
| 60S ribosomal protein L8 | LA | protein | 257 | Homo sapiens | P62917 (AlphaFold model) |
| 60S ribosomal protein L3 | LB | protein | 403 | Homo sapiens | P39023 (AlphaFold model) |
| 60S ribosomal protein L4 | LC | protein | 427 | Homo sapiens | P36578 |
| 60S ribosomal protein L5 | LD | protein | 297 | Homo sapiens | P46777 |
| Large ribosomal subunit protein eL6 | LE | protein | 288 | Homo sapiens | Q02878 |
| Large ribosomal subunit protein uL30 | LF | protein | 248 | Homo sapiens | P18124 |
74 more molecules are not listed.
Sequence of entity 1 (CB), FASTA
>9I2E_1 Elongation factor 2 (chains CB)
MVNFTVDQIRAIMDKKANIRNMSVIAHVDHGKSTLTDSLVCKAGIIASARAGETRFTDTR
KDEQERCITIKSTAISLFYELSENDLNFIKQSKDGAGFLINLIDSPGHVDFSSEVTAALR
VTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLMMNKMDRALLELQLEPEELYQTFQR
IVENVNVIISTYGEGESGPMGNIMIDPVLGTVGFGSGLHGWAFTLKQFAEMYVAKFAAKG
EGQLGPAERAKKVEDMMKKLWGDRYFDPANGKFSKSATSPEGKKLPRTFCQLILDPIFKV
FDAIMNFKKEETAKLIEKLDIKLDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPS
PVTAQKYRCELLYEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGL
VSTGLKVRIMGPNYTPGKKEDLYLKPIQRTILMMGRYVEPIEDVPCGNIVGLVGVDQFLV
KTGTITTFEHAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIEE
SGEHIIAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESNVLCLSKSPNKHN
RLYMKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPN
ILTDITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQ
IIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTP
MFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNSSRPSQVVAETRK
RKGLKEGIPALDNFLDKL
Sequence of entity 2 (CC), FASTA
>9I2E_2 E-site tRNA (chains CC)
GUAGUCGUGGCCGAGUGGUUAAGGCGAUGGACUUGAAAUCCAUUGGGGUCUCCCCGCGCA
GGUUCGAAUCCUGCCGACUACGCCA
Sequence of entity 3 (CD), FASTA
>9I2E_3 Isoform 2 of SERPINE1 mRNA-binding protein 1 (chains CD)
MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ
TNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE
GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG
RGDGFDSRGKREFDRHSGSDRSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQKQISYNY
SDLDQSNVTEETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEF
NIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFGDLGRPG
RGGRGGRGGRGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA
Sequence of entity 4 (L5), FASTA
>9I2E_4 28S rRNA (chains L5)
CGCGACCUCAGAUCAGACGUGGCGACCCGCUGAAUUUAAGCAUAUUAGUCAGCGGAGGAG
AAGAAACUAACCAGGAUUCCCUCAGUAACGGCGAGUGAACAGGGAAGAGCCCAGCGCCGA
AUCCCCGCCCCGCGGCGGGGCGCGGGACAUGUGGCGUACGGAAGACCCGCUCCCCGGCGC
CGCUCGUGGGGGGCCCAAGUCCUUCUGAUCGAGGCCCAGCCCGUGGACGGUGUGAGGCCG
GUAGCGGCCCCCGGCGCGCCGGGCCCGGGUCUUCCCGGAGUCGGGUUGCUUGGGAAUGCA
GCCCAAAGCGGGUGGUAAACUCCAUCUAAGGCUAAAUACCGGCACGAGACCGAUAGUCAA
CAAGUACCGUAAGGGAAAGUUGAAAAGAACUUUGAAGAGAGAGUUCAAGAGGGCGUGAAA
CCGUUAAGAGGUAAACGGGUGGGGUCCGCGCAGUCCGCCCGGAGGAUUCAACCCGGCGGC
GGGUCCGGCCGUGUCGGCGGCCCGGCGGAUCUUUCCCGCCCCCCGUUCCUCCCGACCCCU
CCACCCGCCCUCCCUUCCCCCGCCGCCCCUCCUCCUCCUCCCCGGAGGGGGCGGGCUCCG
GCGGGUGCGGGGGUGGGCGGGCGGGGCCGGGGGUGGGGUCGGCGGGGGACCGUCCCCCGA
CCGGCGACCGGCCGCCGCCGGGCGCAUUUCCACCGCGGCGGUGCGCCGCGACCGGCUCCG
GGACGGCUGGGAAGGCCCGGCGGGGAAGGUGGCUCGGGGGGCCCCGUCCGUCCGUCCGUC
CGUCCUCCUCCUCCCCCGUCUCCGCCCCCCGGCCCCGCGUCCUCCCUCGGGAGGGCGCGC
GGGUCGGGGCGGCGGCGGCGGCGGCGGUGGCGGCGGCGGCGGCGGCGGCGGGACCGAAAC
CCCCCCCGAGUGUUACAGCCCCCCCGGCAGCAGCACUCGCCGAAUCCCGGGGCCGAGGGA
GCGAGACCCGUCGCCGCGCUCUCCCCCCUCCCGGCGCCCACCCCCGCGGGGAAUCCCCCG
CGAGGGGGGUCUCCCCCGCGGGGGCGCGCCGGCGUCUCCUCGUGGGGGGGCCGGGCCACC
CCUCCCACGGCGCGACCGCUCUCCCACCCCUCCUCCCCGCGCCCCCGCCCCGGCGACGGG
GGGGGUGCCGCGCGCGGGUCGGGGGGCGGGGCGGACUGUCCCCAGUGCGCCCCGGGCGGG
UCGCGCCGUCGGGCCCGGGGGAGGUUCUCUCGGGGCCACGCGCGCGUCCCCCGAAGAGGG
GGACGGCGGAGCGAGCGCACGGGGUCGGCGGCGACGUCGGCUACCCACCCGACCCGUCUU
GAAACACGGACCAAGGAGUCUAACACGUGCGCGAGUCGGGGGCUCGCACGAAAGCCGCCG
UGGCGCAAUGAAGGUGAAGGCCGGCGCGCUCGCCGGCCGAGGUGGGAUCCCGAGGCCUCU
CCAGUCCGCCGAGGGCGCACCACCGGCCCGUCUCGCCCGCCGCGCCGGGGAGGUGGAGCA
CGAGCGCACGUGUUAGGACCCGAAAGAUGGUGAACUAUGCCUGGGCAGGGCGAAGCCAGA
GGAAACUCUGGUGGAGGUCCGUAGCGGUCCUGACGUGCAAAUCGGUCGUCCGACCUGGGU
AUAGGGGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCCUCCGAAGUUUCCCUCAG
GAUAGCUGGCGCUCUCGCAGACCCGACGCACCCCCGCCACGCAGUUUUAUCCGGUAAAGC
GAAUGAUUAGAGGUCUUGGGGCCGAAACGAUCUCAACCUAUUCUCAAACUUUAAAUGGGU
AAGAAGCCCGGCUCGCUGGCGUGGAGCCGGGCGUGGAAUGCGAGUGCCUAGUGGGCCACU
UUUGGUAAGCAGAACUGGCGCUGCGGGAUGAACCGAACGCCGGGUUAAGGCGCCCGAUGC
CGACGCUCAUCAGACCCCAGAAAAGGUGUUGGUUGAUAUAGACAGCAGGACGGUGGCCAU
GGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCACCUGCCGAAUCAACUAGCCCUGA
AAAUGGAUGGCGCUGGAGCGUCGGGCCCAUACCCGGCCGUCGCCGGCAGUCGAGAGUGGA
CGGGAGCGGCGGGGGCGGCGCGCGCGCGCGCGCGUGUGGUGUGCGUCGGAGGGCGGCGGC
GGCGGCGGCGGCGGGGGUGUGGGGUCCUUCCCCCGCCCCCCCCCCCACGCCUCCUCCCCU
CCUCCCGCCCACGCCCCGCUCCCCGCCCCCGGAGCCCCGCGGACGCUACGCCGCGACGAG
UAGGAGGGCCGCUGCGGUGAGCCUUGAAGCCUAGGGCGCGGGCCCGGGUGGAGCCGCCGC
AGGUGCAGAUCUUGGUGGUAGUAGCAAAUAUUCAAACGAGAACUUUGAAGGCCGAAGUGG
AGAAGGGUUCCAUGUGAACAGCAGUUGAACAUGGGUCAGUCGGUCCUGAGAGAUGGGCGA
GCGCCGUUCCGAAGGGACGGGCGAUGGCCUCCGUUGCCCUCGGCCGAUCGAAAGGGAGUC
GGGUUCAGAUCCCCGAAUCCGGAGUGGCGGAGAUGGGCGCCGCGAGGCGUCCAGUGCGGU
AACGCGACCGAUCCCGGAGAAGCCGGCGGGAGCCCCGGGGAGAGUUCUCUUUUCUUUGUG
AAGGGCAGGGCGCCCUGGAAUGGGUUCGCCCCGAGAGAGGGGCCCGUGCCUUGGAAAGCG
UCGCGGUUCCGGCGGCGUCCGGUGAGCUCUCGCUGGCCCUUGAAAAUCCGGGGGAGAGGG
UGUAAAUCUCGCGCCGGGCCGUACCCAUAUCCGCAGCAGGUCUCCAAGGUGAACAGCCUC
UGGCAUGUUGGAACAAUGUAGGUAAGGGAAGUCGGCAAGCCGGAUCCGUAACUUCGGGAU
AAGGAUUGGCUCUAAGGGCUGGGUCGGUCGGGCUGGGGCGCGAAGCGGGGCUGGGCGCGC
GCCGCGGCUGGACGAGGCGCCGCCGCCCCCCCCACGCCCGGGGCACCCCCCUCGCGGCCC
UCCCCCGCCCCACCCCGCGCGCGCCGCUCGCUCCCUCCCCGCCCCGCGCCCUCUCUCUCU
CUCUCUCCCCCGCUCCCCGUCCUCCCCCCUCCCCGGGGGAGCGCCGCGUGGGGGCGGCGG
CGGGGGGAGAAGGGUCGGGGCGGCAGGGGCCGGCGGCGGCCCGCCGCGGGGCCCCGGCGG
CGGGGGCACGGUCCCCCGCGAGGGGGGCCCGGGCACCCGGGGGGCCGGCGGCGGCGGCGA
CUCUGGACGCGAGCCGGGCCCUUCCCGUGGAUCGCCCCAGCUGCGGCGGGCGUCGCGGCC
GCCCCCGGGGAGCCCGGCGGGCGCCGGCGCGCCCCCCCCCCCACCCCACGUCUCGUCGCG
CGCGCGUCCGCUGGGGGCGGGGAGCGGUCGGGCGGCGGCGGUCGGCGGGCGGCGGGGCGG
GGCGGUUCGUCCCCCCGCCCUACCCCCCCGGCCCCGUCCGCCCCCCGUUCCCCCCUCCUC
CUCGGCGCGCGGCGGCGGCGGCGGCAGGCGGCGGAGGGGCCGCGGGCCGGUCCCCCCCGC
CGGGUCCGCCCCCGGGGCCGCGGUUCCGCGCGGCGCCUCGCCUCGGCCGGCGCCUAGCAG
CCGACUUAGAACUGGUGCGGACCAGGGGAAUCCGACUGUUUAAUUAAAACAAAGCAUCGC
GAAGGCCCGCGGCGGGUGUUGACGCGAUGUGAUUUCUGCCCAGUGCUCUGAAUGUCAAAG
UGAAGAAAUUCAAUGAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAG
CCAAAUGCCUCGUCAUCUAAUUAGUGACGCGCAUGAAUGGAUGAACGAGAUUCCCACUGU
CCCUACCUACUAUCCAGCGAAACCACAGCCAAGGGAACGGGCUUGGCGGAAUCAGCGGGG
AAAGAAGACCCUGUUGAGCUUGACUCUAGUCUGGCACGGUGAAGAGACAUGAGAGGUGUA
GAAUAAGUGGGAGGCCCCCGGCGCCCCCCCGGUGUCCCCGCGAGGGGCCCGGGGCGGGGU
CCGCCGGCCCUGCGGGCCGCCGGUGAAAUACCACUACUCUGAUCGUUUUUUCACUGACCC
GGUGAGGCGGGGGGGCGAGCCCCGAGGGGCUCUCGCUUCUGGCGCCAAGCGCCCGGCCGC
GCGCCGGCCGGGCGCGACCCGCUCCGGGGACAGUGCCAGGUGGGGAGUUUGACUGGGGCG
GUACACCUGUCAAACGGUAACGCAGGUGUCCUAAGGCGAGCUCAGGGAGGACAGAAACCU
CCCGUGGAGCAGAAGGGCAAAAGCUCGCUUGAUCUUGAUUUUCAGUACGAAUACAGACCG
UGAAAGCGGGGCCUCACGAUCCUUCUGACCUUUUGGGUUUUAAGCAGGAGGUGUCAGAAA
AGUUACCACAGGGAUAACUGGCUUGUGGCGGCCAAGCGUUCAUAGCGACGUCGCUUUUUG
AUCCUUCGAUGUCGGCUCUUCCUAUCAUUGUGAAGCAGAAUUCACCAAGCGUUGGAUUGU
UCACCCACUAAUAGGGAACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUAC
CCUACUGAUGAUGUGUUGUUGCCAUGGUAAUCCUGCUCAGUACGAGAGGAACCGCAGGUU
CAGACAUUUGGUGUAUGUGCUUGGCUGAGGAGCCAAUGGGGCGAAGCUACCAUCUGUGGG
AUUAUGACUGAACGCCUCUAAGUCAGAAUCCCGCCCAGGCGGAACGAUACGGCAGCGCCG
CGGAGCCUCGGUUGGCCUCGGAUAGCCGGUCCCCCGCCUGUCCCCGCCGGCGGGCCGCCC
CCCCCCUCCACGCGCCCCGCGCGCGCGGGAGGGCGCGUGCCCCGCCGCGCGCCGGGACCG
GGGUCCGGUGCGGAGUGCCCUUCGUCCUGGGAAACGGGGCGCGGCCGGAGAGGCGGCCGC
CCCCUCGCCCGUCACGCACCGCACGUUCGUGGGGAACCUGGCGCUAAACCAUUCGUAGAC
GACCUGCUUCUGGGUCGGGG
Sequence of entity 5 (L7), FASTA
>9I2E_5 5S rRNA (chains L7)
GUCUACGGCCAUACCACCCUGAACGCGCCCGAUCUCGUCUGAUCUCGGAAGCUAAGCAGG
GUCGGGCCUGGUUAGUACUUGGAUGGGAGACCGCCUGGGAAUACCGGGUGCUGUAGGCUU
U
Sequence of entity 6 (L8), FASTA
>9I2E_6 5.8S rRNA (chains L8)
CGACUCUUAGCGGUGGAUCACUCGGCUCGUGCGUCGAUGAAGAACGCAGCUAGCUGCGAG
AAUUAAUGUGAAUUGCAGGACACAUUGAUCAUCGACACUUCGAACGCACUUGCGGCCCCG
GGUUCCUCCCGGGGCUACGCCUGUCUGAGCGUCGCUU
Sequence of entity 7 (LA), FASTA
>9I2E_7 60S ribosomal protein L8 (chains LA)
MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK
VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKP
GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL
KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA
RRTGRLRGTKTVQEKEN
Sequence of entity 8 (LB), FASTA
>9I2E_8 60S ribosomal protein L3 (chains LB)
MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV
DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK
NWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL
MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL
PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL
EKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKEEGA
Sequence of entity 9 (LC), FASTA
>9I2E_9 60S ribosomal protein L4 (chains LC)
MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH
QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK
RYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDI
KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL
APGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQR
ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLRVDKAAAAAAA
LQAKSDEKAAVAGKKPVVGKKGKKAAVGVKKQKKPLVGKKAAATKKPAPEKKPAEKKPTT
EEKKPAA
Sequence of entity 10 (LD), FASTA
>9I2E_10 60S ribosomal protein L5 (chains LD)
MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI
ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE
GQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRF
PGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNSVTPDMMEEMY
KKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERAAES
Sequence of entity 11 (LE), FASTA
>9I2E_11 Large ribosomal subunit protein eL6 (chains LE)
MAGEKVEKPDTKEKKPEAKKVDAGGKVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRS
AMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTED
VPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLV
LNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKY
EITEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNGIYPHKLVF
Sequence of entity 12 (LF), FASTA
>9I2E_12 Large ribosomal subunit protein uL30 (chains LF)
MEGVEEKKKEVPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKE
YRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNG
TFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLG
KYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQI
NRLIRRMN
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| ZN | Zinc ion | Zn | 8 |
| MG | Magnesium ion | Mg | 256 |
Primary citation
Structural basis of co-translational N-myristoylation in humans. Denk, T., Monassa, P., Musial, J. et al. Nat Commun (2026) 17:1191-1191. DOI 10.1038/s41467-025-67962-4 · PubMed
Other PDB entries of the same protein (UniProt P13639 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 29IZ 2.08 Å, Dormant 80S:eEF2:SERBP1:tRNA complex from human cells treated with toxin NT-2
- 11IQ 2.4 Å, Rabbit 80S with eEF2,eIF5A and SERBP1
- 8XSX 2.4 Å, Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2
- 9P7D 2.57 Å, In situ human Hibernating class4 80S ribosome
- 9P7E 2.59 Å, In situ human Hibernating class5 80S ribosome
- 9P73 2.66 Å, In situ human eEF2-A/P-P/E state 80S ribosome
- 9T6D 2.67 Å, NAA40-NAC bound human 80S (combined translation states)
- 9P9I 2.77 Å, In situ human unrotated hibernating without CCDC124 state 80S ribosome
- 9M0P 2.78 Å, Cryo-EM structure of human 80S ribosome in complex with montanine
- 9P7C 2.78 Å, In situ human Hibernating class3 80S ribosome
- 9P7A 2.81 Å, In situ human hibernating class2 80S ribosome
- 9B0P 2.82 Å, In situ human Hibernating class1 80S ribosome
Browse structure collections
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