9JA1: DNA-directed RNA polymerase II subunit RPB1

The RNA polymerase II elongation complex from Saccharomyces cerevisiae. Determined by electron microscopy at 2.98 Å resolution. Released 4 Sept 2024.

Method: Electron microscopy
Resolution: 2.98 Å
Organisms: Saccharomyces cerevisiae, synthetic construct
Chains: 14
Atoms: 27,832
Mol. weight: 549.17 kDa
Ligands: ATP, MG, ZN
Released: 4 Sept 2024

Explore 9JA1 in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

9JA1 contains 163 α-helices and 189 β-strands across 11 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 69 helices, 64 β-strands

Element	Residues	Length	Sheet
α-helix	10	1
β-strand	11	1	1
β-strand	16-18	3	2
α-helix	24-30	7
β-strand	34	1	3
β-strand	37	1	4
β-strand	52	1	4
α-helix	66-67	2
β-strand	82-91	10	3
α-helix	93-95	3
α-helix	96-103	8
β-strand	106	1	5
β-strand	113	1	5
α-helix	120-125	6
α-helix	131-142	12
β-strand	147	1	6
β-strand	170	1	6
β-strand	175	1	7
β-strand	182	1	7
β-strand	201	1	7
α-helix	204-212	9
α-helix	216-220	5
β-strand	225	1	8
β-strand	229	1	8
α-helix	231-234	4
β-strand	235-241	7	3
α-helix	242-243	2
α-helix	244-246	3
β-strand	250-252	3	9
β-strand	256-258	3	9
α-helix	261-282	22
α-helix	286-304	19
α-helix	312-314	3
β-strand	315	1	10
α-helix	320	1
β-strand	321	1	10
α-helix	322	1
α-helix	325-329	5
α-helix	335-339	5
β-strand	343-345	3	11
β-strand	348-355	8	12
β-strand	363-367	5	12
α-helix	368-371	4
β-strand	375-379	5	13
α-helix	385-394	10
β-strand	402-406	5	13
β-strand	412-414	3	13
β-strand	431-435	5	13
α-helix	436	1
β-strand	441-445	5	12
α-helix	452-454	3
β-strand	455-463	9	12
β-strand	468-470	3	12
α-helix	475-478	4
β-strand	486-490	5	12
α-helix	495-504	10
β-strand	506	1	12
α-helix	508-510	3
β-strand	512	1	14
β-strand	519	1	14
α-helix	526-534	9
β-strand	540-541	2	15
α-helix	543-551	9
α-helix	560-563	4
β-strand	565	1	16
β-strand	571	1	16
β-strand	572-573	2	15
α-helix	574-578	5
α-helix	583	1
β-strand	588-590	3	17
β-strand	605-608	4	17
β-strand	611-614	4	17
α-helix	619-622	4
α-helix	629-635	7
α-helix	639-658	20
α-helix	666-668	3
α-helix	670-672	3
α-helix	674-697	24
α-helix	715-735	21
α-helix	742-749	8
α-helix	755-758	4
α-helix	759-763	5
β-strand	766-767	2	18
β-strand	769-770	2	19
β-strand	773-774	2	19
α-helix	794-797	4
β-strand	799-800	2	18
α-helix	810-828	19
α-helix	832-844	13
β-strand	849-850	2	20
β-strand	856-857	2	20
β-strand	863-865	3	20
α-helix	868-870	3
β-strand	873	1	21
β-strand	879-882	4	22
α-helix	890-897	8
α-helix	904-906	3
β-strand	913	1	23
α-helix	923-946	24
β-strand	953-956	4	22
α-helix	960-970	11
β-strand	979	1	23
α-helix	983-994	12
α-helix	1005-1014	10
α-helix	1017-1025	9
α-helix	1028-1029	2
α-helix	1030-1034	5
α-helix	1039-1055	17
β-strand	1057	1	21
α-helix	1058-1059	2
α-helix	1064-1079	16
α-helix	1092	1
α-helix	1093-1097	5
α-helix	1098-1104	7
β-strand	1115-1119	5	24
β-strand	1120	1	25
α-helix	1129-1136	8
β-strand	1141-1142	2	26
β-strand	1272-1274	3	26
β-strand	1282-1292	11	24
β-strand	1298-1309	12	24
α-helix	1313-1316	4
β-strand	1322	1	25
β-strand	1328-1329	2	24
α-helix	1332-1339	8
α-helix	1341-1356	16
α-helix	1365-1374	10
α-helix	1396-1399	4
α-helix	1405-1415	11
α-helix	1417	1
β-strand	1418-1419	2	2
α-helix	1424-1429	6
β-strand	1441-1444	4	27

Chain B: 53 helices, 69 β-strands

Element	Residues	Length	Sheet
α-helix	23-26	4
α-helix	30-40	11
α-helix	45-53	9
α-helix	54-58	5
α-helix	59-64	6
β-strand	68	1	28
β-strand	91	1	28
β-strand	95-97	3	29
β-strand	101-102	2	30
β-strand	110-111	2	30
α-helix	114-119	6
β-strand	125-130	6	29
β-strand	165-171	7	29
α-helix	180-183	4
α-helix	186-191	6
β-strand	203-205	3	31
β-strand	208-212	5	31
β-strand	214-218	5	32
α-helix	219	1
β-strand	224-227	4	33
α-helix	228-229	2
β-strand	234-242	9	33
β-strand	252-259	8	33
β-strand	268-271	4	33
β-strand	280-281	2	33
α-helix	282-288	7
α-helix	298-301	4
α-helix	308-319	12
α-helix	320-323	4
α-helix	328-331	4
α-helix	346-353	8
α-helix	355-358	4
α-helix	372-389	18
α-helix	394-397	4
α-helix	401-403	3
β-strand	404-407	4	32
α-helix	409-435	27
α-helix	451-463	13
β-strand	480-482	3	31
α-helix	488-495	8
β-strand	497-499	3	32
α-helix	516-518	3
β-strand	522	1	34
β-strand	533	1	32
β-strand	536-538	3	32
β-strand	539	1	34
β-strand	544-545	2	35
α-helix	552-561	10
α-helix	563	1
β-strand	564-565	2	36
β-strand	578-582	5	36
β-strand	585-590	6	36
α-helix	593-604	12
β-strand	614-618	5	36
α-helix	619-621	3
β-strand	623-627	5	36
β-strand	633-639	7	35
β-strand	640-641	2	37
β-strand	650-651	2	37
α-helix	655-666	12
α-helix	681-686	6
β-strand	690-694	5	35
α-helix	697-700	4
β-strand	703-704	2	35
α-helix	707-710	4
α-helix	728-729	2
β-strand	740-741	2	35
α-helix	745-748	4
α-helix	759-761	3
α-helix	764-773	10
β-strand	793-796	4	38
β-strand	804-805	2	39
α-helix	807-810	4
β-strand	821-827	7	40
β-strand	838-841	4	40
α-helix	843-847	5
β-strand	853-862	10	38
β-strand	873	1	41
α-helix	876-878	3
β-strand	882	1	41
β-strand	898	1	42
β-strand	904-906	3	38
β-strand	910-912	3	42
β-strand	915-917	3	41
β-strand	934-936	3	41
β-strand	939-940	2	42
α-helix	941-942	2
β-strand	946-956	11	38
β-strand	962-971	10	38
β-strand	979-982	4	40
β-strand	987-992	6	40
β-strand	1001-1002	2	43
β-strand	1010-1012	3	40
α-helix	1016-1020	5
α-helix	1023-1038	16
β-strand	1042-1043	2	39
α-helix	1052-1059	8
α-helix	1060-1062	3
β-strand	1069-1070	2	40
β-strand	1072-1073	2	43
α-helix	1079	1
β-strand	1080	1	43
α-helix	1081	1
α-helix	1084	1
β-strand	1085-1094	10	40
α-helix	1099-1101	3
β-strand	1104-1106	3	12
β-strand	1111	1	44
β-strand	1118	1	44
α-helix	1119-1120	2
α-helix	1127	1
β-strand	1128-1130	3	11
α-helix	1132-1141	10
α-helix	1145-1151	7
β-strand	1158-1163	6	1
β-strand	1172-1174	3	45
β-strand	1179-1181	3	45
β-strand	1182	1	46
β-strand	1187	1	46
β-strand	1191-1196	6	1
α-helix	1198-1208	11
β-strand	1215-1217	3	2

Chain C: 10 helices, 12 β-strands

Element	Residues	Length	Sheet
β-strand	7-13	7	47
β-strand	17-23	7	47
α-helix	27-39	13
β-strand	43-54	12	48
α-helix	60-68	9
β-strand	72-74	3	49
α-helix	77-79	3
β-strand	96-104	9	48
α-helix	110	1
β-strand	111-114	4	50
α-helix	115-117	3
β-strand	119-120	2	48
β-strand	129-132	4	49
β-strand	143-147	5	50
β-strand	152-162	11	48
α-helix	168-170	3
β-strand	176-180	5	47
α-helix	202-204	3
α-helix	205-209	5
α-helix	217-219	3
β-strand	228-233	6	47
α-helix	240-267	28

Chain D: 1 helix, 0 β-strands

Element	Residues	Length	Sheet
α-helix	55-64	10

Chain E: 13 helices, 14 β-strands

Element	Residues	Length	Sheet
α-helix	5-26	22
β-strand	28	1	51
α-helix	32-35	4
α-helix	39-46	8
β-strand	47	1	52
β-strand	53	1	52
α-helix	55-57	3
β-strand	60-62	3	53
β-strand	64	1	51
α-helix	66-71	6
β-strand	78-82	5	53
β-strand	87-88	2	54
α-helix	90-102	13
β-strand	107-112	6	53
β-strand	115-116	2	54
α-helix	118-121	4
α-helix	124-126	3
β-strand	131-136	6	53
α-helix	144-146	3
β-strand	152-155	4	55
α-helix	156-157	2
α-helix	158-167	10
α-helix	172-174	3
β-strand	177-178	2	55
α-helix	183-188	6
β-strand	195-201	7	55
β-strand	207-214	8	55

Chain F: 5 helices, 5 β-strands

Element	Residues	Length	Sheet
β-strand	73	1	27
β-strand	84	1	56
α-helix	85-86	2
α-helix	87-102	16
α-helix	105-107	3
α-helix	117-127	11
β-strand	133-137	5	27
α-helix	138	1
β-strand	143-147	5	27
β-strand	152	1	56

Chain G: 3 helices, 7 β-strands

Element	Residues	Length	Sheet
β-strand	4-13	10	59
α-helix	15-17	3
α-helix	22-34	13
β-strand	37	1	60
β-strand	45	1	60
β-strand	47-48	2	59
β-strand	55	1	59
β-strand	59-61	3	59
α-helix	62	1
β-strand	68-77	10	59

Chain H: 0 helices, 9 β-strands

Element	Residues	Length	Sheet
β-strand	7-16	10	16
β-strand	23-30	8	16
β-strand	37-43	7	16
β-strand	54-59	6	16
β-strand	95-98	4	16
β-strand	100-108	9	16
β-strand	111-118	8	16
β-strand	121-127	7	16
β-strand	141-145	5	16

3 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.

Molecules and chains

Molecule	Chains	Type	Length	Organism	UniProt
DNA-directed RNA polymerase II subunit RPB1	A	protein	1733	Saccharomyces cerevisiae	P04050 (AlphaFold model)
DNA-directed RNA polymerase II subunit RPB2	B	protein	1224	Saccharomyces cerevisiae	P08518 (AlphaFold model)
DNA-directed RNA polymerase II subunit RPB3	C	protein	318	Saccharomyces cerevisiae	P16370 (AlphaFold model)
DNA-directed RNA polymerases I, II, and III subunit RPABC1	E	protein	215	Saccharomyces cerevisiae	P20434 (AlphaFold model)
DNA-directed RNA polymerases I, II, and III subunit RPABC2	F	protein	155	Saccharomyces cerevisiae	P20435
DNA-directed RNA polymerases I, II, and III subunit RPABC3	H	protein	146	Saccharomyces cerevisiae	P20436
DNA-directed RNA polymerases I, II, and III subunit RPABC5	J	protein	70	Saccharomyces cerevisiae	P22139
DNA-directed RNA polymerase II subunit RPB11	K	protein	120	Saccharomyces cerevisiae	P38902
DNA-directed RNA polymerases I, II, and III subunit RPABC4	L	protein	70	Saccharomyces cerevisiae	P40422
DNA-directed RNA polymerase II subunit RPB4	D	protein	221	Saccharomyces cerevisiae	P20433
DNA-directed RNA polymerase II subunit RPB7	G	protein	171	Saccharomyces cerevisiae	P34087
RNA (5'-r(papupcpgpapgpapgp*g)-3')	R	RNA	9	synthetic construct

2 more molecules are not listed.

Sequence of entity 1 (A), FASTA

>9JA1_1 DNA-directed RNA polymerase II subunit RPB1 (chains A)
MVGQQYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGS
IDRNLKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNE
LMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVSRGGCGNTQPTIRKDGLK
LVGSWKKDRATGDADEPELRVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLP
VPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESLLQFHV
ATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLE
LDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKR
AGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNA
DFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTF
IELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQRFDEGTTLLSP
KDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHN
GFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVR
FLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFV
DRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRR
LVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAFEKRYRVD
LLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNI
RRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCC
LLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMT
LNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAKLIRSAIEH
TTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQSFDQQSPWLLRLELDRA
AMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSLDAETEAEEDHML
KKIENTMLENITLRGVENIERVVMMKYDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVP
GIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGG
LTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGA
FDVMIDEESLVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGS
NDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHNENENSR

Sequence of entity 2 (B), FASTA

>9JA1_2 DNA-directed RNA polymerase II subunit RPB2 (chains B)
MSDLANSEKYYDEDPYGFEDESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQ
DIICEDSTLILEQLAQHTTESDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLR
NLTYSSGLFVDVKKRTYEAIDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCY
LSEATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEI
RSALEKGSRFISTLQVKLYGREGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEH
ICYDVNDWQMLEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEF
LPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTL
FKKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVS
QVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLS
LMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETL
RTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAK
LMATEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEEND
LDVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGV
FLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMI
MNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIA
PGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDG
LKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSR
MTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKK
LMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIA
HGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAA
KLLFQELMAMNITPRLYTDRSRDF

Sequence of entity 3 (C), FASTA

>9JA1_3 DNA-directed RNA polymerase II subunit RPB3 (chains C)
MSEEGPQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLAD
EFIAHRLGLIPLQSMDIEQLEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVI
VSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFEY
DPWNKLKHTDYWYEQDSAKEWPQSKNCEYEDPPNEGDPFDYKAQADTFYMNVESVGSIPV
DQVVVRGIDTLQKKVASILLALTQMDQDKVNFASGDNNTASNMLGSNEDVMMTGAEQDPY
SNASQMGNTGSGGYDNAW

Sequence of entity 4 (E), FASTA

>9JA1_4 DNA-directed RNA polymerases I, II, and III subunit RPABC1 (chains E)
MDQENERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSF
QANPTEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSA
MKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQLPRIQR
ADPVALYLGLKRGEVVKIIRKSETSGRYASYRICM

Sequence of entity 5 (F), FASTA

>9JA1_5 DNA-directed RNA polymerases I, II, and III subunit RPABC2 (chains F)
MSDYEEAFNDGNENFEDFDVEHFSDEETYEEKPQFKDGETTDANGKTIVTGGNGPEDFQQ
HEQIRRKTLKEKAIPKDQRATTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRI
AMKELAEKKIPLVIRRYLPDGSFEDWSVEELIVDL

Sequence of entity 6 (H), FASTA

>9JA1_6 DNA-directed RNA polymerases I, II, and III subunit RPABC3 (chains H)
MSNTLFDDIFQVSEVDPGRYNKVCRIEAASTTQDQCKLTLDINVELFPVAAQDSLTVTIA
SSLNLEDTPANDSSATRSWRPPQAGDRSLADDYDYVMYGTAYKFEEVSKDLIAVYYSFGG
LLMRLEGNYRNLNNLKQENAYLLIRR

Sequence of entity 7 (J), FASTA

>9JA1_7 DNA-directed RNA polymerases I, II, and III subunit RPABC5 (chains J)
MIVPVRCFSCGKVVGDKWESYLNLLQEDELDEGTALSRLGLKRYCCRRMILTHVDLIEKF
LRYNPLEKRD

Sequence of entity 8 (K), FASTA

>9JA1_8 DNA-directed RNA polymerase II subunit RPB11 (chains K)
MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA
YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLAADDAF

Sequence of entity 9 (L), FASTA

>9JA1_9 DNA-directed RNA polymerases I, II, and III subunit RPABC4 (chains L)
MSREGFQIPTNLDAAAAGTSQARTATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKAR
TKRLVQFEAR

Sequence of entity 10 (D), FASTA

>9JA1_10 DNA-directed RNA polymerase II subunit RPB4 (chains D)
MNVSTSTFQTRRRRLKKVEEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVIK
EALVERRRAFKRSQKKHKKKHLKHENANDETTAVEDEDDDLDEDDVNADDDDFMHSETRE
KELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQL
GSLACDTADEAKTLIPSLNNKISDDELERILKELSNLETLY

Sequence of entity 11 (G), FASTA

>9JA1_11 DNA-directed RNA polymerase II subunit RPB7 (chains G)
MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGR
ILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLT
FNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSIHAIGSIKEDYLGAI

Sequence of entity 12 (R), FASTA

>9JA1_12 RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*G)-3') (chains R)
AUCGAGAGG

Ligands and cofactors

ID	Name	Formula	Copies
ATP	Adenosine-5'-triphosphate	C10 H16 N5 O13 P3	1
MG	Magnesium ion	Mg	2
ZN	Zinc ion	Zn	6

Primary citation

Open architecture of archaea MCM and dsDNA complexes resolved using monodispersed streptavidin affinity CryoEM. Ma, J., Yi, G., Ye, M. et al. Nat Commun (2024) 15:10304-10304. DOI 10.1038/s41467-024-53745-w · PubMed

Other PDB entries of the same protein (UniProt P04050 (AlphaFold model), which also has an AlphaFold model), best resolution first:

5VKO 1.8 Å, SPT6 tSH2-RPB1 1468-1500 pT1471, pS1493
9SV6 1.96 Å, CryoEM structure of transcribing RNA polymerase II elongation complex with ATP and Elf1
5VKL 2.2 Å, SPT6 tSH2-RPB1 1476-1500 pS1493
9W8V 2.23 Å, Structure of post-translocation state of yeast Pol II complexed with a cisplatin-induced…
9QEB 2.26 Å, CryoEM structure of transcribing RNA polymerase II elongation complex
1TWF 2.3 Å, RNA polymerase II complexed with UTP at 2.3 A resolution
9RYB 2.33 Å, CryoEM structure of transcribing RNA polymerase II elongation complex in post-catalysis…
9KD8 2.46 Å, The structure of RNA polymerase II elongation complex paused at N-2 state by actinomycin…
6NPW 2.49 Å, SSu72/Sympk in complex with Ser2/Ser5 phosphorylated peptide
9K7F 2.5 Å, RNA polymerase II elongation complex apo structure.
30ES 2.54 Å, Cryo-EM structure of the yeast RNA polymerase II elongation complex with 19-mer RNA in…
30EP 2.55 Å, Cryo-EM structure of the yeast RNA polymerase II elongation complex with 19-mer RNA in…

Browse structure collections

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