9QK2: Complement C4-A
Structure of the Complement classical and lectin pathway C3 convertase in complex with substrate C3. Determined by electron microscopy at 3.5 Å resolution. Released 24 Dec 2025.
- Method
- Electron microscopy
- Resolution
- 3.5 Å
- Organisms
- Homo sapiens, Lama glama
- Chains
- 7
- Atoms
- 29,917
- Mol. weight
- 1052.22 kDa
- Ligands
- MG, NAG
- Released
- 24 Dec 2025
Explore 9QK2 in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
9QK2 contains 112 α-helices and 266 β-strands across 7 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain A: 15 helices, 53 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 22-26 | 5 | 1 |
| β-strand | 30-32 | 3 | 2 |
| β-strand | 37-44 | 8 | 1 |
| β-strand | 52-59 | 8 | 3 |
| β-strand | 72-76 | 5 | 3 |
| β-strand | 82-87 | 6 | 1 |
| α-helix | 91-96 | 6 | |
| α-helix | 99-101 | 3 | |
| β-strand | 109-113 | 5 | 3 |
| α-helix | 115-116 | 2 | |
| α-helix | 117-121 | 5 | |
| β-strand | 127-131 | 5 | 3 |
| β-strand | 133-135 | 3 | 2 |
| β-strand | 140-145 | 6 | 4 |
| β-strand | 149-150 | 2 | 5 |
| β-strand | 155-163 | 9 | 4 |
| β-strand | 169 | 1 | 4 |
| β-strand | 174-179 | 6 | 5 |
| β-strand | 185-188 | 4 | 5 |
| β-strand | 197-203 | 7 | 4 |
| α-helix | 208-209 | 2 | |
| β-strand | 211-219 | 9 | 5 |
| β-strand | 227-233 | 7 | 5 |
| β-strand | 241-247 | 7 | 6 |
| β-strand | 251-253 | 3 | 7 |
| β-strand | 262-270 | 9 | 6 |
| β-strand | 275 | 1 | 6 |
| β-strand | 278-287 | 10 | 7 |
| β-strand | 293-295 | 3 | 7 |
| β-strand | 301-304 | 4 | 7 |
| β-strand | 306 | 1 | 6 |
| β-strand | 309-314 | 6 | 6 |
| α-helix | 316-325 | 10 | |
| α-helix | 330-332 | 3 | |
| β-strand | 337-346 | 10 | 7 |
| β-strand | 352-357 | 6 | 7 |
| β-strand | 361-363 | 3 | 7 |
| β-strand | 367-368 | 2 | 8 |
| α-helix | 378-379 | 2 | |
| β-strand | 384-389 | 6 | 9 |
| β-strand | 391-392 | 2 | 8 |
| β-strand | 397 | 1 | 8 |
| α-helix | 398 | 1 | |
| β-strand | 402-409 | 8 | 10 |
| β-strand | 417-424 | 8 | 10 |
| β-strand | 430-435 | 6 | 9 |
| β-strand | 443-450 | 8 | 10 |
| β-strand | 456-463 | 8 | 10 |
| α-helix | 464-466 | 3 | |
| β-strand | 472-476 | 5 | 11 |
| β-strand | 488-496 | 9 | 11 |
| β-strand | 504-511 | 8 | 12 |
| β-strand | 514-522 | 9 | 12 |
| β-strand | 527-532 | 6 | 11 |
| β-strand | 540-548 | 9 | 12 |
| β-strand | 553-556 | 4 | 12 |
| β-strand | 559-561 | 3 | 12 |
| α-helix | 562-564 | 3 | |
| β-strand | 574 | 1 | 13 |
| β-strand | 586-591 | 6 | 13 |
| β-strand | 596-600 | 5 | 14 |
| β-strand | 601-604 | 4 | 15 |
| α-helix | 607-611 | 5 | |
| α-helix | 621-629 | 9 | |
| α-helix | 643-650 | 8 | |
| β-strand | 655 | 1 | 16 |
| β-strand | 660 | 1 | 16 |
| α-helix | 661-664 | 4 | |
Chain B: 19 helices, 35 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 766 | 1 | 31 |
| α-helix | 773 | 1 | |
| β-strand | 774-775 | 2 | 32 |
| β-strand | 781-782 | 2 | 15 |
| β-strand | 786-790 | 5 | 14 |
| β-strand | 793-798 | 6 | 13 |
| β-strand | 805-810 | 6 | 15 |
| β-strand | 813-814 | 2 | 14 |
| β-strand | 818-819 | 2 | 14 |
| β-strand | 825-828 | 4 | 15 |
| β-strand | 833-836 | 4 | 33 |
| β-strand | 843-844 | 2 | 34 |
| β-strand | 849-851 | 3 | 35 |
| β-strand | 854-857 | 4 | 33 |
| β-strand | 865-869 | 5 | 32 |
| β-strand | 875-876 | 2 | 36 |
| β-strand | 885-887 | 3 | 32 |
| β-strand | 893-896 | 4 | 33 |
| β-strand | 899-901 | 3 | 35 |
| β-strand | 902-903 | 2 | 36 |
| β-strand | 908-917 | 10 | 32 |
| β-strand | 918 | 1 | 31 |
| β-strand | 924-932 | 9 | 32 |
| β-strand | 933-934 | 2 | 34 |
| α-helix | 935 | 1 | |
| β-strand | 938-948 | 11 | 5 |
| α-helix | 954-956 | 3 | |
| β-strand | 957-960 | 4 | 37 |
| β-strand | 968 | 1 | 5 |
| β-strand | 975-981 | 7 | 5 |
| α-helix | 982-983 | 2 | |
| α-helix | 997-1001 | 5 | |
| α-helix | 1013-1031 | 19 | |
| α-helix | 1034-1036 | 3 | |
| α-helix | 1039-1055 | 17 | |
| α-helix | 1056-1058 | 3 | |
| α-helix | 1076-1088 | 13 | |
| α-helix | 1097-1109 | 13 | |
| α-helix | 1127-1132 | 6 | |
| α-helix | 1138-1154 | 17 | |
| α-helix | 1162-1185 | 24 | |
| α-helix | 1190-1202 | 13 | |
| α-helix | 1207-1219 | 13 | |
| α-helix | 1259-1274 | 16 | |
| α-helix | 1282-1293 | 12 | |
| α-helix | 1302-1319 | 18 | |
| β-strand | 1327-1334 | 8 | 37 |
| β-strand | 1339-1344 | 6 | 37 |
| β-strand | 1355-1360 | 6 | 5 |
| β-strand | 1366-1372 | 7 | 37 |
| β-strand | 1376-1386 | 11 | 5 |
| β-strand | 1397-1401 | 5 | 18 |
| β-strand | 1404-1405 | 2 | 17 |
| β-strand | 1409 | 1 | 20 |
Chain C: 4 helices, 23 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 1465-1467 | 3 | 17 |
| β-strand | 1470-1474 | 5 | 18 |
| β-strand | 1484-1489 | 6 | 19 |
| β-strand | 1494-1496 | 3 | 17 |
| α-helix | 1498-1505 | 8 | |
| β-strand | 1514-1518 | 5 | 19 |
| β-strand | 1521-1526 | 6 | 19 |
| β-strand | 1535-1536 | 2 | 18 |
| β-strand | 1539-1542 | 4 | 17 |
| β-strand | 1546 | 1 | 20 |
| β-strand | 1552-1558 | 7 | 19 |
| β-strand | 1565-1570 | 6 | 19 |
| β-strand | 1581 | 1 | 21 |
| β-strand | 1584 | 1 | 22 |
| β-strand | 1587 | 1 | 22 |
| β-strand | 1590 | 1 | 21 |
| α-helix | 1614-1618 | 5 | |
| β-strand | 1625-1637 | 13 | 23 |
| β-strand | 1640-1652 | 13 | 23 |
| β-strand | 1663-1670 | 8 | 23 |
| β-strand | 1682-1687 | 6 | 23 |
| β-strand | 1692-1693 | 2 | 24 |
| β-strand | 1699-1700 | 2 | 24 |
| β-strand | 1701-1702 | 2 | 23 |
| β-strand | 1708-1711 | 4 | 23 |
| α-helix | 1712-1713 | 2 | |
| α-helix | 1721-1739 | 19 | |
Chain D: 1 helix, 11 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 4-7 | 4 | 38 |
| β-strand | 13 | 1 | 39 |
| β-strand | 19-24 | 6 | 38 |
| β-strand | 31-35 | 5 | 40 |
| β-strand | 42-47 | 6 | 40 |
| β-strand | 54-56 | 3 | 40 |
| α-helix | 58-60 | 3 | |
| β-strand | 65-68 | 4 | 38 |
| β-strand | 74-78 | 5 | 38 |
| β-strand | 88-93 | 6 | 40 |
| β-strand | 114-116 | 3 | 40 |
| β-strand | 119 | 1 | 39 |
Chain E: 16 helices, 25 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 245-246 | 2 | 25 |
| β-strand | 252-260 | 9 | 26 |
| α-helix | 267-286 | 20 | |
| β-strand | 291-298 | 8 | 26 |
| β-strand | 302-306 | 5 | 26 |
| α-helix | 311-314 | 4 | |
| α-helix | 316-324 | 9 | |
| α-helix | 329-331 | 3 | |
| α-helix | 339-355 | 17 | |
| α-helix | 362-365 | 4 | |
| β-strand | 367-374 | 8 | 26 |
| α-helix | 385-395 | 11 | |
| α-helix | 403-405 | 3 | |
| β-strand | 406-412 | 7 | 26 |
| α-helix | 420-426 | 7 | |
| β-strand | 436-438 | 3 | 26 |
| α-helix | 442-451 | 10 | |
| β-strand | 453-454 | 2 | 25 |
| α-helix | 474-477 | 4 | |
| β-strand | 481-485 | 5 | 27 |
| β-strand | 492-496 | 5 | 27 |
| β-strand | 501-504 | 4 | 27 |
| β-strand | 519-522 | 4 | 27 |
| β-strand | 531-540 | 10 | 27 |
| β-strand | 563-567 | 5 | 27 |
| β-strand | 574 | 1 | 28 |
| β-strand | 577 | 1 | 28 |
| β-strand | 581 | 1 | 29 |
| β-strand | 585 | 1 | 30 |
| α-helix | 586-591 | 6 | |
| α-helix | 600-607 | 8 | |
| β-strand | 612-618 | 7 | 29 |
| β-strand | 624-630 | 7 | 29 |
| α-helix | 633-644 | 12 | |
| β-strand | 663-664 | 2 | 29 |
| β-strand | 682-687 | 6 | 29 |
| β-strand | 690-699 | 10 | 29 |
| β-strand | 728-730 | 3 | 29 |
| α-helix | 733-735 | 3 | |
| α-helix | 736-743 | 8 | |
| β-strand | 749 | 1 | 30 |
Chain F: 15 helices, 62 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 25-31 | 7 | 41 |
| β-strand | 33-34 | 2 | 42 |
| β-strand | 36 | 1 | 43 |
| β-strand | 39-47 | 9 | 41 |
| β-strand | 53-61 | 9 | 42 |
| β-strand | 68-76 | 9 | 42 |
| α-helix | 78-80 | 3 | |
| β-strand | 83-89 | 7 | 41 |
| β-strand | 90 | 1 | 43 |
| β-strand | 105-112 | 8 | 42 |
| β-strand | 115-123 | 9 | 42 |
| β-strand | 129-134 | 6 | 44 |
| β-strand | 138 | 1 | 45 |
| α-helix | 143 | 1 | |
| β-strand | 144-152 | 9 | 44 |
| β-strand | 158 | 1 | 44 |
| β-strand | 162-168 | 7 | 45 |
| β-strand | 174-181 | 8 | 45 |
| β-strand | 188-194 | 7 | 44 |
| β-strand | 203-210 | 8 | 45 |
| β-strand | 218-223 | 6 | 45 |
| β-strand | 232-238 | 7 | 46 |
| β-strand | 243-244 | 2 | 47 |
| β-strand | 251-259 | 9 | 46 |
| β-strand | 264 | 1 | 46 |
| β-strand | 267-276 | 10 | 48 |
| β-strand | 277 | 1 | 49 |
| β-strand | 280 | 1 | 49 |
| β-strand | 283 | 1 | 48 |
| β-strand | 289-293 | 5 | 48 |
| β-strand | 294 | 1 | 46 |
| β-strand | 297 | 1 | 46 |
| β-strand | 300-302 | 3 | 46 |
| α-helix | 304-310 | 7 | |
| α-helix | 316-319 | 4 | |
| β-strand | 323-332 | 10 | 48 |
| β-strand | 338-346 | 9 | 48 |
| β-strand | 348-349 | 2 | 47 |
| β-strand | 354-357 | 4 | 50 |
| β-strand | 363-364 | 2 | 51 |
| β-strand | 370-371 | 2 | 52 |
| β-strand | 374-377 | 4 | 50 |
| β-strand | 383 | 1 | 50 |
| β-strand | 388-391 | 4 | 53 |
| β-strand | 399-400 | 2 | 53 |
| β-strand | 406-407 | 2 | 50 |
| β-strand | 410-411 | 2 | 52 |
| α-helix | 412-414 | 3 | |
| α-helix | 419 | 1 | |
| β-strand | 420-426 | 7 | 53 |
| α-helix | 433-435 | 3 | |
| β-strand | 438-443 | 6 | 53 |
| β-strand | 444-445 | 2 | 51 |
| β-strand | 455-459 | 5 | 54 |
| β-strand | 465 | 1 | 55 |
| β-strand | 470-478 | 9 | 54 |
| α-helix | 484-486 | 3 | |
| β-strand | 489-490 | 2 | 56 |
| β-strand | 491-496 | 6 | 57 |
| β-strand | 499-503 | 5 | 57 |
| β-strand | 506-507 | 2 | 56 |
| β-strand | 514-520 | 7 | 54 |
| α-helix | 523-525 | 3 | |
| β-strand | 529-538 | 10 | 57 |
| β-strand | 544-553 | 10 | 57 |
| β-strand | 555 | 1 | 55 |
| β-strand | 563-567 | 5 | 58 |
| β-strand | 580-588 | 9 | 58 |
| β-strand | 592-598 | 7 | 59 |
| α-helix | 601-605 | 5 | |
| α-helix | 606-608 | 3 | |
| α-helix | 613-621 | 9 | |
| α-helix | 635-641 | 7 | |
| β-strand | 644-648 | 5 | 41 |
| β-strand | 653 | 1 | 41 |
| α-helix | 654-656 | 3 | |
| α-helix | 662-664 | 3 | |
Chain G: 42 helices, 57 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 676-683 | 8 | |
| α-helix | 688-698 | 11 | |
| α-helix | 700-701 | 2 | |
| α-helix | 707-710 | 4 | |
| α-helix | 711-713 | 3 | |
| α-helix | 718-741 | 24 | |
| α-helix | 750-752 | 3 | |
| α-helix | 768-770 | 3 | |
| β-strand | 771 | 1 | 59 |
| β-strand | 775-777 | 3 | 59 |
| α-helix | 781-782 | 2 | |
| β-strand | 783 | 1 | 58 |
| β-strand | 786-794 | 9 | 58 |
| β-strand | 801-810 | 10 | 59 |
| β-strand | 814-817 | 4 | 59 |
| α-helix | 818-820 | 3 | |
| β-strand | 821-824 | 4 | 59 |
| β-strand | 829-834 | 6 | 60 |
| β-strand | 838-840 | 3 | 61 |
| β-strand | 844-845 | 2 | 62 |
| β-strand | 848-853 | 6 | 60 |
| β-strand | 860-866 | 7 | 61 |
| β-strand | 869 | 1 | 63 |
| β-strand | 872 | 1 | 63 |
| β-strand | 882-888 | 7 | 61 |
| α-helix | 889 | 1 | |
| β-strand | 892-897 | 6 | 60 |
| β-strand | 900 | 1 | 62 |
| β-strand | 902 | 1 | 63 |
| β-strand | 906-916 | 11 | 61 |
| β-strand | 924-932 | 9 | 61 |
| β-strand | 936-943 | 8 | 64 |
| β-strand | 946-947 | 2 | 64 |
| β-strand | 958-962 | 5 | 65 |
| α-helix | 963-965 | 3 | |
| β-strand | 970 | 1 | 64 |
| α-helix | 971 | 1 | |
| β-strand | 977-983 | 7 | 64 |
| α-helix | 988-995 | 8 | |
| α-helix | 1000-1003 | 4 | |
| α-helix | 1013-1015 | 3 | |
| α-helix | 1019-1031 | 13 | |
| α-helix | 1034-1037 | 4 | |
| α-helix | 1040-1056 | 17 | |
| α-helix | 1057-1059 | 3 | |
| β-strand | 1060 | 1 | 66 |
| β-strand | 1066 | 1 | 66 |
| β-strand | 1067 | 1 | 67 |
| β-strand | 1074 | 1 | 67 |
| α-helix | 1076-1087 | 12 | |
| α-helix | 1097-1110 | 14 | |
| β-strand | 1112 | 1 | 68 |
| β-strand | 1118 | 1 | 68 |
| α-helix | 1123-1124 | 2 | |
| α-helix | 1140-1153 | 14 | |
| α-helix | 1165-1178 | 14 | |
| α-helix | 1180-1182 | 3 | |
| α-helix | 1186-1199 | 14 | |
| α-helix | 1205-1213 | 9 | |
| β-strand | 1215 | 1 | 69 |
| β-strand | 1219 | 1 | 69 |
| α-helix | 1227-1242 | 16 | |
| α-helix | 1249-1256 | 8 | |
| β-strand | 1262 | 1 | 70 |
| β-strand | 1265 | 1 | 70 |
| α-helix | 1269-1284 | 16 | |
| β-strand | 1293-1299 | 7 | 65 |
| α-helix | 1306 | 1 | |
| β-strand | 1307-1312 | 6 | 65 |
| β-strand | 1319-1324 | 6 | 64 |
| β-strand | 1330-1334 | 5 | 65 |
| β-strand | 1340-1350 | 11 | 64 |
| β-strand | 1361-1369 | 9 | 71 |
| β-strand | 1382-1392 | 11 | 71 |
| β-strand | 1401-1406 | 6 | 72 |
| β-strand | 1411-1413 | 3 | 71 |
| α-helix | 1415-1423 | 9 | |
| β-strand | 1431-1433 | 3 | 72 |
| β-strand | 1443-1448 | 6 | 72 |
| β-strand | 1457-1465 | 9 | 71 |
| β-strand | 1469-1470 | 2 | 62 |
| α-helix | 1472-1474 | 3 | |
| β-strand | 1475-1481 | 7 | 72 |
| β-strand | 1488-1493 | 6 | 72 |
| α-helix | 1510-1515 | 6 | |
| α-helix | 1529-1536 | 8 | |
| β-strand | 1541-1553 | 13 | 73 |
| β-strand | 1558-1570 | 13 | 73 |
| β-strand | 1581-1587 | 7 | 73 |
| α-helix | 1588-1590 | 3 | |
| α-helix | 1591-1594 | 4 | |
| β-strand | 1601-1607 | 7 | 73 |
| β-strand | 1611 | 1 | 73 |
| β-strand | 1620-1621 | 2 | 73 |
| β-strand | 1629-1631 | 3 | 73 |
| α-helix | 1632-1633 | 2 | |
| α-helix | 1635-1638 | 4 | |
| α-helix | 1640-1654 | 15 | |
| α-helix | 1655-1659 | 5 | |
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| Complement C4-A | A, B, C | protein | 1744 | Homo sapiens | P0C0L4 (AlphaFold model) |
| Complement C2 | E | protein | 752 | Homo sapiens | P06681 (AlphaFold model) |
| Anti-C4b nanobody B12 | D | protein | 120 | Lama glama | |
| Complement C3 | F, G | protein | 1663 | Homo sapiens | P01024 (AlphaFold model) |
Sequence of entity 1 (A, B, C), FASTA
>9QK2_1 Complement C4-A (chains A, B, C)
MRLLWGLIWASSFFTLSLQKPRLLLFSPSVVHLGVPLSVGVQLQDVPRGQVVKGSVFLRN
PSRNNVPCSPKVDFTLSSERDFALLSLQVPLKDAKSCGLHQLLRGPEVQLVAHSPWLKDS
LSRTTNIQGINLLFSSRRGHLFLQTDQPIYNPGQRVRYRVFALDQKMRPSTDTITVMVEN
SHGLRVRKKEVYMPSSIFQDDFVIPDISEPGTWKISARFSDGLESNSSTQFEVKKYVLPN
FEVKITPGKPYILTVPGHLDEMQLDIQARYIYGKPVQGVAYVRFGLLDEDGKKTFFRGLE
SQTKLVNGQSHISLSKAEFQDALEKLNMGITDLQGLRLYVAAAIIESPGGEMEEAELTSW
YFVSSPFSLDLSKTKRHLVPGAPFLLQALVREMSGSPASGIPVKVSATVSSPGSVPEVQD
IQQNTDGSGQVSIPIIIPQTISELQLSVSAGSPHPAIARLTVAAPPSGGPGFLSIERPDS
RPPRVGDTLNLNLRAVGSGATFSHYYYMILSRGQIVFMNREPKRTLTSVSVFVDHHLAPS
FYFVAFYYHGDHPVANSLRVDVQAGACEGKLELSVDGAKQYRNGESVKLHLETDSLALVA
LGALDTALYAAGSKSHKPLNMGKVFEAMNSYDLGCGPGGGDSALQVFQAAGLAFSDGDQW
TLSRKRLSCPKEKTTRKKRNVNFQKAINEKLGQYASPTAKRCCQDGVTRLPMMRSCEQRA
ARVQQPDCREPFLSCCQFAESLRKKSRDKGQAGLQRALEILQEEDLIDEDDIPVRSFFPE
NWLWRVETVDRFQILTLWLPDSLTTWEIHGLSLSKTKGLCVATPVQLRVFREFHLHLRLP
MSVRRFEQLELRPVLYNYLDKNLTVSVHVSPVEGLCLAGGGGLAQQVLVPAGSARPVAFS
VVPTAAAAVSLKVVARGSFEFPVGDAVSKVLQIEKEGAIHREELVYELNPLDHRGRTLEI
PGNSDPNMIPDGDFNSYVRVTASDPLDTLGSEGALSPGGVASLLRLPRGCGEQTMIYLAP
TLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTA
FVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDETVA
LTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKANSFLGEKASAGLLGAHAAAITAYAL
SLTKAPVDLLGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPAL
WIETTAYALLHLLLHEGKAEMADQASAWLTRQGSFQGGFRSTQDTVIALDALSAYWIASH
TTEERGLNVTLSSTGRNGFKSHALQLNNRQIRGLEEELQFSLGSKINVKVGGNSKGTLKV
LRTYNVLDMKNTTCQDLQIEVTVKGHVEYTMEANEDYEDYEYDELPAKDDPDAPLQPVTP
LQLFEGRRNRRRREAPKVVEEQESRVHYTVCIWRNGKVGLSGMAIADVTLLSGFHALRAD
LEKLTSLSDRYVSHFETEGPHVLLYFDSVPTSRECVGFEAVQEVPVGLVQPASATLYDYY
NPERRCSVFYGAPSKSRLLATLCSAEVCQCAEGKCPRQRRALERGLQDEDGYRMKFACYY
PRVEYGFQVKVLREDSRAAFRLFETKITQVLHFTKDVKAAANQMRNFLVRASCRLRLEPG
KEYLIMGLDGATYDLEGHPQYLLDSNSWIEEMPSERLCRSTRQRAACAQLNDFLQEYGTQ
GCQV
Sequence of entity 2 (E), FASTA
>9QK2_2 Complement C2 (chains E)
MGPLMVLFCLLFLYPGLADSAPSCPQNVNISGGTFTLSHGWAPGSLLTYSCPQGLYPSPA
SRLCKSSGQWQTPGATRSLSKAVCKPVRCPAPVSFENGIYTPRLGSYPVGGNVSFECEDG
FILRGSPVRQCRPNGMWDGETAVCDNGAGHCPNPGISLGAVRTGFRFGHGDKVRYRCSSN
LVLTGSSERECQGNGVWSGTEPICRQPYSYDFPEDVAPALGTSFSHMLGATNPTQKTKES
LGRKIQIQRSGHLNLYLLLDCSQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFAS
EPKVLMSVLNDNSRDMTEVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRLLGME
TMAWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILNINQKRNDYLDIYAIGVGKLDVDW
RELNELGSKKDGERHAFILQDTKALHQVFEHMLDVSKLTDTICGVGNMSANASDQERTPW
HVTIKPKSQETCRGALISDQWVLTAAHCFRDGNDHSLWRVNVGDPKSQWGKEFLIEKAVI
SPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMSTHARPICLPCTMEANLALRRPQGSTC
RDHENELLNKQSVPAHFVALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVT
DQFLCSGTQEDESPCKGEAGGAVFLERRFRFFQVGLVSWGLYNPCLGSADKNSRKRAPRS
KVPPPRDFHINLFRMQPWLRQHLGDVLNFLPL
Sequence of entity 3 (D), FASTA
>9QK2_3 Anti-C4b nanobody B12 (chains D)
EVQLVESGGGLVQAGGSLRLSCVASERTYMAWFRQAPGKEREFVAAITSSGMMTEYAPSV
KGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAADLRQRFGERVTEYDYWGQGTQVTVSS
Sequence of entity 4 (F, G), FASTA
>9QK2_4 Complement C3 (chains F, G)
MGPTSGPSLLLLLLTHLPLALGSPMYSIITPNILRLESEETMVLEAHDAQGDVPVTVTVH
DFPGKKLVLSSEKTVLTPATNHMGNVTFTIPANREFKSEKGRNKFVTVQATFGTQVVEKV
VLVSLQSGYLFIQTDKTIYTPGSTVLYRIFTVNHKLLPVGRTVMVNIENPEGIPVKQDSL
SSQNQLGVLPLSWDIPELVNMGQWKIRAYYENSPQQVFSTEFEVKEYVLPSFEVIVEPTE
KFYYIYNEKGLEVTITARFLYGKKVEGTAFVIFGIQDGEQRISLPESLKRIPIEDGSGEV
VLSRKVLLDGVQNLRAEDLVGKSLYVSATVILHSGSDMVQAERSGIPIVTSPYQIHFTKT
PKYFKPGMPFDLMVFVTNPDGSPAYRVPVAVQGEDTVQSLTQGDGVAKLSINTHPSQKPL
SITVRTKKQELSEAEQATRTMQALPYSTVGNSNNYLHLSVLRTELRPGETLNVNFLLRMD
RAHEAKIRYYTYLIMNKGRLLKAGRQVREPGQDLVVLPLSITTDFIPSFRLVAYYTLIGA
SGQREVVADSVWVDVKDSCVGSLVVKSGQSEDRQPVPGQQMTLKIEGDHGARVVLVAVDK
GVFVLNKKNKLTQSKIWDVVEKADIGCTPGSGKDYAGVFSDAGLTFTSSSGQQTAQRAEL
QCPQPAARRRRSVQLTEKRMDKVGKYPKELRKCCEDGMRENPMRFSCQRRTRFISLGEAC
KKVFLDCCNYITELRRQHARASHLGLARSNLDEDIIAEENIVSRSEFPESWLWNVEDLKE
PPKNGISTKLMNIFLKDSITTWEILAVSMSDKKGICVADPFEVTVMQDFFIDLRLPYSVV
RNEQVEIRAVLYNYRQNQELKVRVELLHNPAFCSLATTKRRHQQTVTIPPKSSLSVPYVI
VPLKTGLQEVEVKAAVYHHFISDGVRKSLKVVPEGIRMNKTVAVRTLDPERLGREGVQKE
DIPPADLSDQVPDTESETRILLQGTPVAQMTEDAVDAERLKHLIVTPSGCGEQNMIGMTP
TVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTA
YVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKD
MALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMG
RLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDFDFVPPVVRWLNEQR
YYGGGYGSTQATFMVFQALAQYQKDAPDHQELNLDVSLQLPSRSSKITHRIHWESASLLR
SEETKENEGFTVTAEGKGQGTLSVVTMYHAKAKDQLTCNKFDLKVTIKPAPETEKRPQDA
KNTMILEICTRYRGDQDATMSILDISMMTGFAPDTDDLKQLANGVDRYISKYELDKAFSD
RNTLIIYLDKVSHSEDDCLAFKVHQYFNVELIQPGAVKVYAYYNLEESCTRFYHPEKEDG
KLNKLCRDELCRCAEENCFIQKSDDKVTLEERLDKACEPGVDYVYKTRLVKVQLSNDFDE
YIMAIEQTIKSGSDEVQVGQQRTFISPIKCREALKLEEKKHYLMWGLSSDFWGEKPNLSY
IIGKDTWVEHWPEEDECQDEENQKQCQDLGAFTESMVVFGCPN
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| MG | Magnesium ion | Mg | 1 |
| NAG | 2-acetamido-2-deoxy-beta-D-glucopyranose | C8 H15 N O6 | 8 |
Primary citation
Structural insights into C3 convertase activity of the classical pathway of complement. De la O Becerra, K.I., Brondijk, T.H.C., Serna Martin, I. et al. Nat Commun (2025) 17:993-993. DOI 10.1038/s41467-025-67730-4 · PubMed
Other PDB entries of the same protein (UniProt P0C0L4 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 1HZF 2.3 Å, C4ADG fragment of human complement factor C4A
- 6YSQ 3.3 Å, The hC4Nb8 complement inhibitory nanobody in complex with C4b
- 7B2M 3.39 Å, Cryo-EM structure of complement C4b in complex with nanobody E3
- 7B2P 3.43 Å, Cryo-EM structure of complement C4b in complex with nanobody B5
- 5JTW 3.5 Å, Crystal structure of complement C4b re-refined using iMDFF
- 9QJ5 3.5 Å, Structure of the Complement classical and lectin pathway proconvertase, C4b2
- 5JPN 3.6 Å, Structure of human complement C4 rebuilt using iMDFF
- 5JPM 3.75 Å, Structure of the complex of human complement C4 with MASP-2 rebuilt using iMDFF
- 7B2Q 3.76 Å, Cryo-EM structure of complement C4b in complex with nanobody B12
- 9QJ4 3.9 Å, Structure of the Complement classical and lectin pathway proconvertase, C4b2
- 9QPY 4.3 Å, Structure of the Complement classical and lectin pathway C3 convertase
Browse structure collections
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