PAmCherry1 protein (PAmCherry) is a 236-residue protein from Discosoma sp.. This is its AlphaFold structure prediction, created 1 Jun 2022. UniProt accession: D1MPT3.
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The mean pLDDT of this model is 94.9 (very high overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 90% |
| 70 to 90 | Confident: backbone generally right | 4% |
| 50 to 70 | Low: treat with caution | 6% |
| Below 50 | Very low: often disordered regions | 0% |
What pLDDT means and how to read it
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 3NED | X-ray | 0.95 Å | A=2-236 |
| 6MZ3 | X-ray | 1.09 Å | A=1-236 |
| 3LF3 | X-ray | 1.15 Å | A=6-236 |
| 7SAK | X-ray | 1.15 Å | A=1-236 |
| 3KCS | X-ray | 1.5 Å | A=1-236 |
| 9FEL | X-ray | 1.5 Å | A/L=1-236 |
| 6YLM | X-ray | 1.6 Å | A=1-236 |
| 3KCT | X-ray | 1.65 Å | A=1-236 |
| 3NEZ | X-ray | 1.7 Å | A/B/C/D=2-236 |
| 5H89 | X-ray | 1.76 Å | A/B/C/D=2-236 |
| 3LF4 | X-ray | 1.81 Å | A=6-71, B=72-236 |
| 7SAL | X-ray | 1.93 Å | A/B=1-236 |
| 7RY2 | X-ray | 2.05 Å | A/B/C/D/E/F/G/H=2-236 |
| 5H87 | X-ray | 2.24 Å | A/B/C/D=2-236 |
| 7SAJ | X-ray | 2.37 Å | A/C/E/G/I=1-236 |
| 6B0B | X-ray | 3.28 Å | D/H=1-232 |
| 6BBO | X-ray | 3.43 Å | D/H=9-227 |
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