ATP-dependent RNA helicase (CTHT_0000650) is a 556-residue protein from Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719). This is its AlphaFold structure prediction, created 1 Jun 2022. UniProt accession: G0RYU9.
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The mean pLDDT of this model is 74.9 (confident overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 35% |
| 70 to 90 | Confident: backbone generally right | 40% |
| 50 to 70 | Low: treat with caution | 5% |
| Below 50 | Very low: often disordered regions | 21% |
What pLDDT means and how to read it
ATP-dependent RNA helicase involved in 40S ribosomal subunit biogenesis. Required for the processing and cleavage of 35S pre-rRNA at sites A0, A1, and A2, leading to mature 18S rRNA
Associates in the nucleolus with the 60S and pre-60S ribosomal subunits
Nucleus, nucleolus
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 8I9Z | EM | 2.7 Å | CE=1-556 |
| 8IA0 | EM | 2.7 Å | CE=1-556 |
| 8I9X | EM | 2.8 Å | CE=1-556 |
| 8I9P | EM | 3.0 Å | CE=1-556 |
| 8I9R | EM | 3.1 Å | CE=1-556 |
| 8I9V | EM | 3.1 Å | CE=1-556 |
| 8I9W | EM | 3.1 Å | CE=1-556 |
| 8I9Y | EM | 3.1 Å | CE=1-556 |
| 8I9T | EM | 3.6 Å | CE=1-556 |
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