Symportin 1 (HT_0033460) is a 676-residue protein from Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719). This is its AlphaFold structure prediction, created 1 Aug 2025. UniProt accession: G0S5S6.
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The mean pLDDT of this model is 84.5 (confident overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 69% |
| 70 to 90 | Confident: backbone generally right | 13% |
| 50 to 70 | Low: treat with caution | 5% |
| Below 50 | Very low: often disordered regions | 13% |
What pLDDT means and how to read it
Involved in ribosomal large subunit assembly
Component of a hexameric 5S RNP precursor complex, composed of 5S RNA, RRS1, RPF2, RPL5, RPL11 and SYO1; this complex acts as a precursor for ribosome assembly
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 4GMO | X-ray | 2.1 Å | A=1-676 |
| 4GMN | X-ray | 2.95 Å | A=1-676 |
| 5AFF | X-ray | 3.4 Å | A=24-676 |
| 7OZS | EM | 3.5 Å | F=1-676 |
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