Structural basis of Rpl5 recognition by Syo1. Determined by X-ray diffraction at 2.95 Å resolution. Released 31 Oct 2012.
Explore 4GMN in 3D Show helices and sheets RCSB PDB PDBe
4GMN contains 43 α-helices and 4 β-strands across 2 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
| Element | Residues | Length | Sheet |
|---|---|---|---|
| α-helix | 37-43 | 7 | |
| α-helix | 48-61 | 14 | |
| α-helix | 67-73 | 7 | |
| α-helix | 76-82 | 7 | |
| α-helix | 84-86 | 3 | |
| α-helix | 90-106 | 17 | |
| α-helix | 110-117 | 8 | |
| α-helix | 120-136 | 17 | |
| α-helix | 142-144 | 3 | |
| α-helix | 147-168 | 22 | |
| α-helix | 172-178 | 7 | |
| α-helix | 182-194 | 13 | |
| α-helix | 199-213 | 15 | |
| α-helix | 217-224 | 8 | |
| α-helix | 231-240 | 10 | |
| α-helix | 246-259 | 14 | |
| β-strand | 268 | 1 | 2 |
| β-strand | 272 | 1 | 2 |
| α-helix | 274-277 | 4 | |
| α-helix | 278-283 | 6 | |
| α-helix | 301 | 1 | |
| α-helix | 302-306 | 5 | |
| α-helix | 307-328 | 22 | |
| α-helix | 412-416 | 5 | |
| α-helix | 417-421 | 5 | |
| α-helix | 422-430 | 9 | |
| α-helix | 436-456 | 21 | |
| β-strand | 459 | 1 | 1 |
| α-helix | 467-479 | 13 | |
| α-helix | 480-485 | 6 | |
| α-helix | 486-490 | 5 | |
| α-helix | 496-513 | 18 | |
| α-helix | 523-533 | 11 | |
| α-helix | 551-553 | 3 | |
| α-helix | 555-565 | 11 | |
| α-helix | 573-588 | 16 | |
| α-helix | 590-592 | 3 | |
| α-helix | 595-608 | 14 | |
| α-helix | 615-616 | 2 | |
| α-helix | 617-622 | 6 | |
| α-helix | 626-641 | 16 | |
| α-helix | 650-671 | 22 |
| Element | Residues | Length | Sheet |
|---|---|---|---|
| α-helix | 5 | 1 | |
| β-strand | 6 | 1 | 1 |
| α-helix | 7 | 1 | |
| α-helix | 10-16 | 7 | |
| α-helix | 18-19 | 2 |
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|---|---|---|---|---|
| 60S ribosomal protein l5-like protein | B | protein | 49 | Chaetomium thermophilum | G0SEG2 (AlphaFold model) |
| Putative uncharacterized protein | A | protein | 676 | Chaetomium thermophilum | G0S5S6 (AlphaFold model) |
>4GMN_1 60S ribosomal protein l5-like protein (chains B) MAFHKLVKNSAYYSRFQTKFKRRRQGKTDYYARKRLITQAKGSHHHHHH
>4GMN_2 Putative uncharacterized protein (chains A) MGKTRRNRVRNRTDPIAKPVKPPTDPELAKLREDKILPVLKDLKSPDAKSRTTAAGAIAN IVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDV LTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVAT KQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT GTDPRAVMACGVLHNVFTSLQWMDHSPGKDGACDAILIPTLTRALEHVVPGGAKFNGDAR YANITLLALVTLASIGTDFQETLVKGNQGSRESPISAADEEWNGFDDADGDAMDVDQKSS SGEDQEEDYEEIDVKEDDEDDDDDSITSEMQADMERVVGADGTDDGDLEDLPTLRELIQT AVPQLIRLSNLPIDSDESLTIQSHALSALNNISWTISCLEFANGENANIHNAWYPTAKKI WRKTILPILEADSADLKLATQVTSLAWAVARVLHGETPTDGNPHRKFISLYHSSKQQAGG NSNSIEEPEDPFQGLGVKCIGVVGSLAHDPAPIEVNREVGVFLVTLLRQSNNVPPAEIVE ALNQLFDIYGDEELACDKEVFWKDGFLKHLEEFLPKMRTLTKGIDKRTQPELRTRADEAL LNLGRFVQYKKKHAPK
Synchronizing nuclear import of ribosomal proteins with ribosome assembly. Kressler, D., Bange, G., Ogawa, Y. et al. Science (2012) 338:666-671. DOI 10.1126/science.1226960 · PubMed
Other PDB entries of the same protein (UniProt G0SEG2 (AlphaFold model), which also has an AlphaFold model), best resolution first:
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