Tubulin alpha-3 chain (Tuba3a) is a 450-residue protein from Mus musculus. This is its AlphaFold structure prediction, created 1 Aug 2025. UniProt accession: P05214.
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The mean pLDDT of this model is 91.6 (very high overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 81% |
| 70 to 90 | Confident: backbone generally right | 14% |
| 50 to 70 | Low: treat with caution | 4% |
| Below 50 | Very low: often disordered regions | 1% |
What pLDDT means and how to read it
Tubulin is the major constituent of microtubules, a cylinder consisting of laterally associated linear protofilaments composed of alpha- and beta-tubulin heterodimers. Microtubules grow by the addition of GTP-tubulin dimers to the microtubule end, where a stabilizing cap forms. Below the cap, tubulin dimers are in GDP-bound state, owing to GTPase activity of alpha-tubulin
Dimer of alpha and beta chains. A typical microtubule is a hollow water-filled tube with an outer diameter of 25 nm and an inner diameter of 15 nM. Alpha-beta heterodimers associate head-to-tail to form protofilaments running lengthwise along the microtubule wall with the beta-tubulin subunit facing the microtubule plus end conferring a structural polarity. Microtubules usually have 13…
Cytoplasm, cytoskeleton, Cytoplasm, cytoskeleton, flagellum axoneme
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 8IYJ | EM | 3.5 Å | AA/AC/AE/AG/AI/AK/AM/AO/BC/BE/BG/BI/BK/BM/BO/CC/CE/CG/CI/CK/CM/CO/CQ/DC/DE/DG/DI/DK/DM/DO=1-450 |
| 8I7O | EM | 4.5 Å | AE/AG/AI/BE/BG/BI/CG/CI/DE/DG/EE/EG/FE/FG/GE/GG/GI/HE/HG/HI/IE/IG/II/JE/JG/KE/KG/KI/LE/LG=1-438 |
| 8I7R | EM | 6.5 Å | AC/AE/AG/AI/AK/AM/BC/BE/BG/BI/BK/BM/CC/CE/CG/CI/CK/CM/DA/DC/DE/DG/DI/DK/EA/EC/EE/EG/EI/EK=1-438 |
| 9IJJ | EM | 7.7 Å | Ac/Ae/Ag/Ai/Ak/Ao/Aq/As/Au/Aw/Bc/Be/Bg/Bi/Bk/Bm/Bo/Bq/Bs/Bu/Cc/Ce/Cg/Ci/Ck/Cm/Co/Cq/Cs/Cu=1-450 |
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