8I7O: Tektin-1

In situ structure of axonemal doublet microtubules in mouse sperm with 16-nm repeat. Determined by electron microscopy at 4.5 Å resolution. Released 11 Oct 2023.

Method
Electron microscopy
Resolution
4.5 Å
Organism
Mus musculus
Chains
189
Atoms
540,760
Mol. weight
9097.62 kDa
Ligands
GTP
Released
11 Oct 2023

Explore 8I7O in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

8I7O contains 3,068 α-helices and 2,157 β-strands across 189 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A2: 6 helices, 0 β-strands

ElementResiduesLengthSheet
α-helix52-10453
α-helix106-12015
α-helix131-19060
α-helix214-30592
α-helix307-31913
α-helix332-39463
Chain A3: 3 helices, 0 β-strands
ElementResiduesLengthSheet
α-helix13-10492
α-helix145-19046
α-helix214-25239
Chain AE: 20 helices, 14 β-strands
ElementResiduesLengthSheet
β-strand5-9561
α-helix11-2717
β-strand53-54262
β-strand62-63262
β-strand65-69561
α-helix72-798
α-helix89-913
β-strand92-94361
α-helix103-1042
α-helix105-1095
α-helix112-12817
β-strand134-140761
α-helix146-16015
β-strand165-171761
α-helix172-1743
α-helix183-19412
β-strand200-204561
α-helix206-21510
α-helix224-24320
α-helix252-2598
β-strand269-272461
α-helix278-2836
α-helix288-2958
α-helix298-3003
β-strand301161
β-strand312-3211061
α-helix325-33713
β-strand343161
β-strand351-356661
α-helix359-3624
β-strand373-381961
α-helix385-40016
α-helix405-4117
α-helix416-43621
Chain AF: 22 helices, 19 β-strands
ElementResiduesLengthSheet
β-strand2-9879
α-helix11-2717
β-strand30180
β-strand36180
α-helix41-466
α-helix47-493
β-strand51181
β-strand54182
β-strand58182
β-strand61181
β-strand63-67579
α-helix70-789
β-strand90-92379
α-helix1021
α-helix103-1075
α-helix109-1113
α-helix113-12614
β-strand129-136879
α-helix142-15817
β-strand163-167579
β-strand170183
α-helix171-1722
α-helix181-19515
β-strand198-200379
β-strand203183
α-helix204-2107
α-helix211-2155
α-helix222-23716
α-helix250-2578
β-strand265-266279
β-strand267184
α-helix278-2814
α-helix286-2938
β-strand310-318984
α-helix323-33614
β-strand349-354684
α-helix357-3582
β-strand364-371884
α-helix375-38915
α-helix395-4017
α-helix405-42622
Chain AG: 24 helices, 12 β-strands
ElementResiduesLengthSheet
β-strand5-95101
α-helix11-2818
α-helix48-514
β-strand65-695101
α-helix72-798
α-helix82-843
α-helix89-913
β-strand92-943101
α-helix103-1042
α-helix105-1095
α-helix111-1133
α-helix115-12814
β-strand134-1407101
α-helix146-16015
β-strand165-1717101
α-helix172-1743
α-helix183-19412
β-strand200-2045101
α-helix206-2127
α-helix213-2175
α-helix224-24320
α-helix252-2598
β-strand2691102
β-strand2721102
α-helix278-2836
α-helix288-2958
α-helix307-3093
β-strand312-3209102
α-helix325-33713
β-strand3431102
β-strand351-3566102
α-helix359-3602
β-strand374-3818102
α-helix385-40016
α-helix405-4106
α-helix416-43621
Chain AH: 22 helices, 16 β-strands
ElementResiduesLengthSheet
β-strand2-98113
α-helix10-2718
α-helix41-455
α-helix46-494
β-strand511114
β-strand611114
β-strand63-664113
α-helix70-789
α-helix82-843
β-strand90-912113
α-helix101-1022
α-helix103-1075
α-helix109-1113
α-helix113-12614
β-strand129-1368113
α-helix142-15817
β-strand163-1708113
α-helix171-1722
α-helix181-19515
β-strand198-2036113
α-helix204-2107
α-helix211-2155
α-helix222-23716
α-helix250-2578
β-strand265-2662113
β-strand2671115
β-strand2701115
α-helix286-2938
α-helix305-3073
β-strand310-3189115
α-helix323-33614
β-strand3421116
β-strand3451116
β-strand349-3546115
β-strand364-3718115
α-helix374-38916
α-helix395-4017
α-helix406-42621
Chain AI: 21 helices, 13 β-strands
ElementResiduesLengthSheet
β-strand4-96131
α-helix11-2818
α-helix48-514
β-strand531132
β-strand631132
β-strand65-695131
α-helix73-797
α-helix89-913
β-strand92-943131
α-helix103-1042
α-helix105-1095
α-helix112-12615
β-strand134-1407131
α-helix146-16015
β-strand165-1717131
α-helix172-1743
α-helix183-19412
β-strand200-2045131
α-helix206-21510
α-helix224-24320
α-helix252-2598
β-strand269-2724133
α-helix278-2836
α-helix288-2958
α-helix298-3003
β-strand312-3209133
α-helix325-33713
β-strand3431133
β-strand351-3566133
α-helix359-3613
β-strand374-3818133
α-helix385-40117
α-helix405-4117
α-helix416-43621
Chain B2: 8 helices, 2 β-strands
ElementResiduesLengthSheet
α-helix92-10413
α-helix108-12114
α-helix125-1273
β-strand1291146
α-helix132-15827
α-helix238-32083
α-helix326-3283
β-strand3301147
α-helix333-39159
α-helix395-3973

179 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
Tektin-1A2, A3protein418Mus musculusQ9DAJ2 (AlphaFold model)
Detyrosinated tubulin alpha-3 chainAE, AG, AI, BE, BG, BI, CG, CI, DE, DG, EE, EG, FE, FG, GE, GG, GI, HE, HG, HI, IE, IG, II, JE, JG, KE, KG, KI, LE, LG, LI, ME, MG, MI, NE, NG, NI, OE, OG, OI, PE, PG, PI, QE, QG, QI, RE, RG, RI, SE, SG, SI, TG, TI, UE, UG, VE, VG, WE, WG, WIprotein438Mus musculusP05214 (AlphaFold model)
Tubulin beta-4B chainAF, AH, BF, BH, CF, CH, CJ, DD, DF, DH, ED, EF, EH, FD, FF, FH, GD, GF, GH, HD, HF, HH, IF, IH, JD, JF, JH, KD, KF, KH, LD, LF, LH, MF, MH, ND, NF, NH, OD, OF, OH, PF, PH, QF, QH, RF, RH, RJ, SF, SH, SJ, TF, TH, TJ, UD, UF, UH, VD, VF, VH, WF, WHprotein427Mus musculusP68372 (AlphaFold model)
Tektin-2B2, B3, B7, B8protein430Mus musculusQ922G7 (AlphaFold model)
Tektin-3C2, C3, C4, C7, C8, Cb, Ccprotein490Mus musculusQ6X6Z7
Tektin-4D2, D3, D4, D7, D8, D9protein447Mus musculusQ149S1
Tektin bundle-interacting protein 1E2, E3protein206Mus musculusA6H6Q4
Tektin-5F2, F3, F6, F7, Fa, Fb, Fc, Flprotein557Mus musculusG5E8A8
EF-hand domain-containing protein 1G1, G2protein648Mus musculusQ9D9T8
EF-hand domain-containing family member C2G5protein750Mus musculusQ9D485
Protein FAM166AH3, H4protein319Mus musculusQ9D4K5
Protein FAM166CI2, I3protein200Mus musculusQ9DAS2

12 more molecules are not listed.

Sequence of entity 1 (A2, A3), FASTA
>8I7O_1 Tektin-1 (chains A2, A3)
MAKLLQSPPRFLPEEWYIANKSQYHRAEAQRSQSERLVAESQRLVEEIEKTTRKSQSDVN
KKLEQRLEEVRFWKKELDDKLEQLVNQTDDLLTYKTRLERSLESYKEPLHITEKCLEYRE
KRVGIDLVHDVVEQELQKEADIIHGVMNLLIRTLEESTEQIRLNRSAKYNLEKDLRDKFT
AITIDDVCFSLNNNSPNINFSEKVVRIEPNSVSLEDWLDFSNANVEKADKQLNNSTALKT
LVDQILSQTANDLRRQCEVVDEAFINGLKETKDARNKLADHLAKVMEEIASQEKNIMALE
NAITQQEGPAKVAHTRLETRTHRPNVELCRDIAQYRLIKEIQEINHNVARLKETLAQAQT
QLKALYRRQLALQEEIQVKENTIYIDQVLCMEMRKSIPPRDGDDHGAWEGGIRAEAIC
Sequence of entity 2 (AE, AG, AI, BE, BG, BI, CG, CI, DE, DG, EE, EG, FE, FG, GE, GG, GI, HE, HG, HI, IE, IG, II, JE, JG, KE, KG, KI, LE, LG, LI, ME, MG, MI, NE, NG, NI, OE, OG, OI, PE, PG, PI, QE, QG, QI, RE, RG, RI, SE, SG, SI, TG, TI, UE, UG, VE, VG, WE, WG, WI), FASTA
>8I7O_2 Detyrosinated tubulin alpha-3 chain (chains AE, AG, AI, BE, BG, BI, CG, CI, DE, DG, EE, EG, FE, FG, GE, GG, GI, HE, HG, HI, IE, IG, II, JE, JG, KE, KG, KI, LE, LG, LI, ME, MG, MI, NE, NG, NI, OE, OG, OI, PE, PG, PI, QE, QG, QI, RE, RG, RI, SE, SG, SI, TG, TI, UE, UG, VE, VG, WE, WG, WI)
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD
RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP
TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
AREDLAALEKDYEEVGVD
Sequence of entity 3 (AF, AH, BF, BH, CF, CH, CJ, DD, DF, DH, ED, EF, EH, FD, FF, FH, GD, GF, GH, HD, HF, HH, IF, IH, JD, JF, JH, KD, KF, KH, LD, LF, LH, MF, MH, ND, NF, NH, OD, OF, OH, PF, PH, QF, QH, RF, RH, RJ, SF, SH, SJ, TF, TH, TJ, UD, UF, UH, VD, VF, VH, WF, WH), FASTA
>8I7O_3 Tubulin beta-4B chain (chains AF, AH, BF, BH, CF, CH, CJ, DD, DF, DH, ED, EF, EH, FD, FF, FH, GD, GF, GH, HD, HF, HH, IF, IH, JD, JF, JH, KD, KF, KH, LD, LF, LH, MF, MH, ND, NF, NH, OD, OF, OH, PF, PH, QF, QH, RF, RH, RJ, SF, SH, SJ, TF, TH, TJ, UD, UF, UH, VD, VF, VH, WF, WH)
MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV
PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV
EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
EYQQYQD
Sequence of entity 4 (B2, B3, B7, B8), FASTA
>8I7O_4 Tektin-2 (chains B2, B3, B7, B8)
MATLSFKPSERYRLSDWRTNSYLLSTNAERQRDASHQIRQEARILRNETNNQIVWDEHDN
RTRLAERIDTVNRWKETLDKCLTDLDAEIDSLAQAKESAEQNLQAKNLPLDVAIECLTLR
ESRRDIDVVRDPVEEELLKEVEVIEATKKVLQEKISQAFQHLCLLQEIRQQLNSDHRDKM
ETLEIDRGCLSLNLTSPNISLKVNPTRIPKDSTTLQQWDEFTRFNKNRAEAEMKASIELR
EAIALAIAQTNNELDAQRVATEFTFRKRLREMESFYSELKWQEKNTLEEIAELQGDIRRL
EEDLRRKMMNLKLAHTRLESRTYRSNVELCRDQTQYGLIDEVHQLEATINTMKQKLAQTQ
NALDALFKHLARIQADIACKTNTLLLDTKCMDTRRKLTVPAEKFVPQVDTFTRTTNRTLS
PLKICQLELT
Sequence of entity 5 (C2, C3, C4, C7, C8, Cb, Cc), FASTA
>8I7O_5 Tektin-3 (chains C2, C3, C4, C7, C8, Cb, Cc)
MELLGSTLTATYAHPPPASASFLPAIGTITSSYKDRFPHRNLTHSLSLPWRPNTYYKTAY
NYPTLAPYSSRSQRVCESTMLPFVSNRTTFFTRYTPDDWYRSNLVSFQESNSSRHNSERL
RVDTSRLIQDKYQQIRKTQAHSTQNLGERVNDLAFWKSEITHELDEMIGETNALTDIKRR
LERGLIETEGPLQVSRECLFHREKRMGIDLVHDEAEKELLAEVDTILCCQERMRQHLDKA
NAQLASDRSAQHELEKDLSDKQAALRIDDKCQHLRNTSEGVSYFRGVERVDATVSVPETW
AKFTDDNVLRSQSERAASAKLREETENLLIVTANEMWNQFNKVNLAFTNRIAETVDAKNK
IHTHLTKTLQEIFQIEMTIESIKKAIKEKSAFLKVAQTRLDERTRRPNVELCRDMAQLRL
VNEVYEVDETIQTLQQRLRDSEDTLQSLAHTKATLEHDLAVKANTLYIDQEKCMSMRNSY
PSTLRLVGYC
Sequence of entity 6 (D2, D3, D4, D7, D8, D9), FASTA
>8I7O_6 Tektin-4 (chains D2, D3, D4, D7, D8, D9)
MAQTGVLLTKEPAPQSIDVCELPRKEYEVACNTGAYTSSGLATAGFRTAKYLRDEWFQNS
YARYHQAFADRDYSERQRHESGQLVAETGALAQRTQLDSTRKVGERLEDMHCWKSELQRE
IDELSSETDLMMAQKLRLQRALDATSVPYSIATDNLQCRERRQHPDLVRDYVEVELLKET
ELIRNIQELLKRTIGQAVDQIRLNREHKESCEMNWSDKVEVYNIDDTCSRYTNESTQVQF
YPHSSKFEESASTPETWAKFNHDNLLRAERERLASVNLRKLIDCILRDTAEDLRLQCDAV
NSAFSSRCQELDDSLQKLQYHLRKTLTEITDQEHQIAALKQAIKDKEAPLRVAQTRLYQR
SHRPNVELCRDNAQFRLLSEVEELNMSLRALKEKLQDAEQALRNLEDSRMSLEKDIAVKT
NSLFIDRQKCMTHRNRYPSVLQLAGYQ
Sequence of entity 7 (E2, E3), FASTA
>8I7O_7 Tektin bundle-interacting protein 1 (chains E2, E3)
MENVRREATRPSVPSGTLELYFPDHLYRNDYVSLEGPRWAPAIKQAVRWKFTPMGRDAAG
QVWFTGLTNSEPGDAWYKLPRALDTPYREAHTRWHGCFQSRQRGLPPAYTQHLREMAFWD
PAITAQYLNSGPRWGCMQWRDRQIRGKEFVVTRNQFGAKLPWRSDYVPLLSLPQRPRFTA
QDFRQRGLQRPCPAIGQPPPAFTPAL
Sequence of entity 8 (F2, F3, F6, F7, Fa, Fb, Fc, Fl), FASTA
>8I7O_8 Tektin-5 (chains F2, F3, F6, F7, Fa, Fb, Fc, Fl)
MEFLGTTQTASFCGPKKGCGLQALPPAGQEPVVQECYQPFHLPGYRYLNAWRPSVFHKIA
TSQTIPEECSGIRRPPTILPSLRSALFCRYTPRDWDRSNDLQIRNAEASRLWASRLTGDS
LRIMQDKDQLIHQMQEGTSRNLGQRLSDLGFWKSELCYELDRLLTENSSMDTLKRRLECA
AEEVNCPLQVALECLYNREKRIGIDLVHDNVEKNLIREVDLLKCCQDQMRKLAKRIDFQI
RDNRDAQHSLERDIEDKSSAQYIDENCFNLRSTSDSISFFHGVEKFDGTVSIPETWAKFS
NDNIRHAQNMRANSIRLREEAEHLFETLSDQMWKQFTNTNLAFNARISEETDVKNKLQTQ
LAKILQEIFQAENTIMLLERAIVAKEYPLKMAQTMLACRTRRPNVELCRDVPQFRLVNEV
FTIDDTLQTLKLRLRETQDTLQLLVMTKSRLEHELAIKANTLCIDKDKCMSMRKSFPSTP
RLTGYTCSAIGSGPYANHAPRISSGPCSGSALCKGPASCGGGASCGGGASCGGHAPCGSA
LCSHSVSRSGPGFAPVC
Sequence of entity 9 (G1, G2), FASTA
>8I7O_9 EF-hand domain-containing protein 1 (chains G1, G2)
MGTNPVHGLPFLPGSSFTDSTKTAFHRSQTLNYRNGYAVVRRPTMGIGGDRLHYNQLSQA
ELDELANKAPILTYGPLKQAPLAEFVPAHVAFDKKVLKFSAYFQEDVPISMEEHYRIRHV
NIYYYLEDDSMSVIEPVVENSGIPQGKLIKRQRFTKNDMGDHYHWKDLNRGINLTVYGKT
FRIVDCDRFTQDFLESQGIELNPSEKIPLDPYTQLRKEPVRKYVTPSDFDQLKQFLTFDK
QVLRFYAIWDDTDSLFGECRHYIIHYYLMDDTVEIREVHERNNGRDPFPLLMNRQRMPKV
LVENAKNFPKCVLEISDQEVLEWYTAKDFIVGKPLTILGRTFFIYDCDPFTRQFYKDKFG
MPDLPPVDVTKKEPPPVKQELPPYNGYGLIEDSAQNCFALIPKAPRKDVVKMLMNDNKVL
RYLAALESPIPEDKDRRFVFSYFLATDMISIFEPPVRNSGIIGGKFLGRTKVVKSFSPVD
NPIYYSPSDFFIGAVIEVFGHRFVILDTDEYVLKYMESNASQYSPEALASIQNRIQKPEL
PAPELESKQATGEPMVQGTEESKVQDLDALIDQIHMHLKYNSYKENLRETFQMYDKDESG
YVDRETFFKICETLNVPVDDSLIKELIRLCTHGEGRINYYNFVRAFSN
Sequence of entity 10 (G5), FASTA
>8I7O_10 EF-hand domain-containing family member C2 (chains G5)
MALPFLPGNSFNRNIGKERFHKSQHWGFCNNVRMLVSENKPGVGGDLLYGQKIKPKHSVF
PKGDGTDAPSWVAFDKQVLSFDAYLEDEISDKRQEIFRIRYYKIYFYLEDDTIQVNEPEV
INSGLPQGTSIRRQRIPYPPPNDDQFYTVYDFNINISVVFYGRTFKIYDCDPFTKNFLKK
IGIKLNPPGQCPLDPYMKMRRETLEFVDPFRPYQSFDTLKRFIQYDGKVLRFFCLWDDST
SLFGDRREFVLHYFLCDGTVEIREVLPSNSGRDAMSSFLRRGKLPKYGPPGIYQPGQITD
RAVLNVYGGLSEWRADGYLLDKYQLGKVEQDFYTDQDLSIGATINVWGRKVLLCDCDEFT
KTYYRTKYGVDNFTPISCKPPHLPKIERKYPPYTGFGSEEDSFRSCVGLKPTPHRKNFKK
FMELDSFGNISNILRYFGKLITHKCADVDRIFVIAFYLSDDTISVFEPIENNSGNAGGMF
LKRSRVKKPGQEVFKSEFSEYIKAEELYIGATVNINGYLFILLNADEYTLNYMENNTDKF
PYSNFELAIQKLKQEKSKSREITQVFAAADYNHTKVVPYNTFRDILMSITMGKLIDQELI
TIARHYRVPEIMDPDLAYLIARAHEKFKKNIFENFDMFIYNCVYEDREKKGVLPTKDIRR
MCKSSRLPLDDDFLDCLLSRFEDKDHQINYEIFFSVLNWRMNPTPDLQAPPYLKEKCEDV
WVGMPSPIPVKYVRYLDFLIDVYGLEDNML
Sequence of entity 11 (H3, H4), FASTA
>8I7O_11 Protein FAM166A (chains H3, H4)
MTATQKHNLFTPEPHYIPGYAGFYPQLRYQVGNTYGRTTAQLLTDPSVQKSPCSVLSPMT
KPKFIEDFSKSKPPWIPCRDLREPYIPHYTSLKPYKNFEILGQLPRQDVDTQGPPQVENR
QGPLTAGFMPYPPYPACPPGRKGEARDLGHPGLLLAYGEEAWKDAAPLQDTPGKNNQLYH
CRRDEYLPPHPPQETLDVGRFQRLPQLDHPNLIQRKAISGYAGFVPRFAWVMGMNYRDGV
TQAMDDFDKNQFVFRHPVCALGERLPRTHWPNTTIYRSQGLIPFYMGFIPSMQDNYALTF
GNSTRRAYQKELDRRSHTL
Sequence of entity 12 (I2, I3), FASTA
>8I7O_12 Protein FAM166C (chains I2, I3)
MAFRSAGTLMTEFNAAFVPPALMPGYKGHVPGVASSFGSSYGNTTFKYFQDLRNTGLEKS
YALLSGGCFPTIFSPNSPLVLTDNSQNWDRWLHQPTYSRSNQDNGRTTELTNFYKTVQQQ
RKYYQDKTGILSRVPYFVLPVKEPDRYPLPTDLPPLSEKSKWNLLRLSPDYKRTYQTFPS
GKRVSSQERQRRDLYFEFRA

Ligands and cofactors

IDNameFormulaCopies
GTPGuanosine-5'-triphosphateC10 H16 N5 O14 P3123

Primary citation

In-cell structural insight into the stability of sperm microtubule doublet. Tai, L., Yin, G., Huang, X. et al. Cell Discov (2023) 9:116-116. DOI 10.1038/s41421-023-00606-3 · PubMed

Other PDB entries of the same protein (UniProt Q9DAJ2 (AlphaFold model), which also has an AlphaFold model), best resolution first:

Browse structure collections

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