Glutamate receptor 1 (Gria1) is a 907-residue protein from Rattus norvegicus. This is its AlphaFold structure prediction, created 1 Aug 2025. UniProt accession: P19490.
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The mean pLDDT of this model is 80.9 (confident overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 46% |
| 70 to 90 | Confident: backbone generally right | 36% |
| 50 to 70 | Low: treat with caution | 7% |
| Below 50 | Very low: often disordered regions | 12% |
What pLDDT means and how to read it
Ionotropic glutamate receptor that functions as a ligand-gated cation channel, gated by L-glutamate and glutamatergic agonists such as alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA), quisqualic acid, and kainic acid (PubMed:2166337, PubMed:2168579). L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system. Binding of the excitatory neurotransmitter L-glutamate induces a conformation change, leading to the opening of the cation channel, and thereby converts the chemical signal to an electrical impulse upon entry of monovalent and divalent cations such as sodium and calcium (PubMed:11773314, PubMed:18817736). The receptor then…
Homotetramer or heterotetramer of pore-forming glutamate receptor subunits; heteromeric assembly can be the result of both receptor subtype and flip-flop forms and according the composition, one partner can be dominant with respect to the fast desensitizing current component, whereas the other can determine the steady-state component (PubMed:1699275, PubMed:21639859, PubMed:2168579). Tetramers…
Cell membrane, Endoplasmic reticulum membrane, Postsynaptic cell membrane, Postsynaptic density membrane, Cell projection, dendrite, Cell projection, dendritic spine, Early endosome membrane, Recycling endosome membrane, Presynapse, Synapse
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 2AWW | X-ray | 2.21 Å | C=890-907 |
| 2G2L | X-ray | 2.35 Å | C/D=890-907 |
| 3SAJ | X-ray | 2.5 Å | A/B/C/D=22-392 |
| 8C2H | EM | 2.64 Å | A/B/C/D=1-907 |
| 8C2I | EM | 2.7 Å | A/B/C/D=1-907 |
| 8AYN | EM | 2.8 Å | A/C=1-907 |
| 8C1Q | EM | 2.82 Å | A/B/C/D=1-907 |
| 8C1P | EM | 2.9 Å | A/B/C/D=1-907 |
| 7OCE | EM | 3.1 Å | A/C=1-907 |
| 8AYL | EM | 3.2 Å | A/C=1-907 |
| 9OVU | EM | 3.2 Å | A/C=1-841 |
| 9NR6 | EM | 3.26 Å | A/C=19-391 |
| 8AYM | EM | 3.3 Å | A/C=1-907 |
| 8AYO | EM | 3.3 Å | A/C=1-907 |
| 8P3T | EM | 3.39 Å | A/B/C/D=1-907 |
| 7OCA | EM | 3.4 Å | A/C=1-907 |
| 7OCC | EM | 3.4 Å | A/C=1-907 |
| 9OVT | EM | 3.43 Å | A/C=403-833 |
| 7OCD | EM | 3.5 Å | A/C=1-907 |
| 7QHB | EM | 3.5 Å | A/C=1-907 |
Showing 20 of 34 experimental structures (best resolution first).
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