Nucleolar protein 16 (NOP16) is a 231-residue protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c). This is its AlphaFold structure prediction, created 1 Aug 2025. UniProt accession: P40007.
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The mean pLDDT of this model is 78.7 (confident overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 35% |
| 70 to 90 | Confident: backbone generally right | 38% |
| 50 to 70 | Low: treat with caution | 19% |
| Below 50 | Very low: often disordered regions | 8% |
What pLDDT means and how to read it
Involved in the biogenesis of the 60S ribosomal subunit
Component of the pre-66S ribosomal particle. Interacts with NOP7, RRP1 and RRP15 (By similarity)
Nucleus, nucleolus
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 8V83 | EM | 2.53 Å | v=1-231 |
| 8V87 | EM | 2.66 Å | v=1-231 |
| 8V84 | EM | 2.7 Å | v=1-231 |
| 7R6Q | EM | 2.98 Å | v=1-231 |
| 7NAC | EM | 3.04 Å | v=1-231 |
| 7R7A | EM | 3.04 Å | v=1-231 |
| 6EM3 | EM | 3.2 Å | v=1-231 |
| 6ELZ | EM | 3.3 Å | v=1-231 |
| 7OHX | EM | 3.3 Å | v=1-231 |
| 7OHW | EM | 3.5 Å | v=1-231 |
| 6EM1 | EM | 3.6 Å | v=1-231 |
| 6C0F | EM | 3.7 Å | 7=1-231 |
| 7OHP | EM | 3.9 Å | v=1-231 |
| 7OHV | EM | 3.9 Å | v=1-231 |
| 6EM4 | EM | 4.1 Å | v=1-231 |
| 6EM5 | EM | 4.3 Å | v=1-231 |
| 7OHS | EM | 4.38 Å | v=1-231 |
| 6CB1 | EM | 4.6 Å | 7=1-231 |
| 7OHR | EM | 4.72 Å | v=1-231 |
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