6C0F: Yeast nucleolar pre-60S ribosomal subunit
Yeast nucleolar pre-60S ribosomal subunit (state 2). Determined by electron microscopy at 3.7 Å resolution. Released 14 Mar 2018.
- Method
- Electron microscopy
- Resolution
- 3.7 Å
- Organism
- Saccharomyces cerevisiae BY4741
- Chains
- 43
- Atoms
- 91,742
- Mol. weight
- 2443.79 kDa
- Ligands
- ZN
- Released
- 14 Mar 2018
Explore 6C0F in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
6C0F contains 331 α-helices and 327 β-strands across 40 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain 7: 10 helices, 1 β-strand
| Element | Residues | Length | Sheet |
|---|
| α-helix | 4-11 | 8 | |
| α-helix | 34-39 | 6 | |
| α-helix | 46-53 | 8 | |
| α-helix | 73-74 | 2 | |
| β-strand | 75 | 1 | 18 |
| α-helix | 76-77 | 2 | |
| α-helix | 157-167 | 11 | |
| α-helix | 169-170 | 2 | |
| α-helix | 179-191 | 13 | |
| α-helix | 197-200 | 4 | |
| α-helix | 214-225 | 12 | |
Chain 8: 3 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 297-313 | 17 | |
| α-helix | 316-336 | 21 | |
| α-helix | 344-392 | 49 | |
Chain A: 7 helices, 34 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 2-7 | 6 | 2 |
| β-strand | 12-17 | 6 | 2 |
| β-strand | 22 | 1 | 3 |
| β-strand | 23 | 1 | 4 |
| β-strand | 30 | 1 | 3 |
| α-helix | 31-32 | 2 | |
| β-strand | 34-38 | 5 | 2 |
| α-helix | 43-45 | 3 | |
| β-strand | 50-53 | 4 | 5 |
| β-strand | 57-61 | 5 | 5 |
| β-strand | 67-76 | 10 | 5 |
| β-strand | 104-114 | 11 | 5 |
| α-helix | 121-125 | 5 | |
| β-strand | 142-145 | 4 | 6 |
| β-strand | 154-158 | 5 | 6 |
| β-strand | 164-169 | 6 | 6 |
| β-strand | 175-181 | 7 | 6 |
| β-strand | 189-192 | 4 | 7 |
| β-strand | 203-209 | 7 | 7 |
| β-strand | 212-219 | 8 | 7 |
| β-strand | 226-231 | 6 | 7 |
| α-helix | 234-237 | 4 | |
| α-helix | 242-245 | 4 | |
| β-strand | 248-253 | 6 | 8 |
| β-strand | 254 | 1 | 9 |
| α-helix | 260-262 | 3 | |
| β-strand | 269-274 | 6 | 8 |
| β-strand | 278-283 | 6 | 8 |
| β-strand | 292-295 | 4 | 8 |
| β-strand | 303-308 | 6 | 10 |
| β-strand | 317 | 1 | 9 |
| β-strand | 323 | 1 | 9 |
| α-helix | 328-330 | 3 | |
| β-strand | 333-337 | 5 | 10 |
| β-strand | 342-345 | 4 | 10 |
| β-strand | 351-354 | 4 | 10 |
| β-strand | 366-370 | 5 | 4 |
| β-strand | 374-378 | 5 | 4 |
| β-strand | 383-388 | 6 | 4 |
| β-strand | 394-399 | 6 | 4 |
| β-strand | 404-409 | 6 | 2 |
Chain b: 9 helices, 11 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 33-37 | 5 | 93 |
| α-helix | 43-55 | 13 | |
| β-strand | 61 | 1 | 93 |
| α-helix | 62-65 | 4 | |
| α-helix | 72-81 | 10 | |
| β-strand | 85-92 | 8 | 93 |
| β-strand | 96-102 | 7 | 93 |
| β-strand | 109-118 | 10 | 93 |
| α-helix | 133-135 | 3 | |
| β-strand | 136-139 | 4 | 93 |
| α-helix | 147-160 | 14 | |
| β-strand | 176-181 | 6 | 93 |
| β-strand | 185-191 | 7 | 93 |
| β-strand | 214 | 1 | 93 |
| β-strand | 218-227 | 10 | 93 |
| α-helix | 234 | 1 | |
| β-strand | 235-238 | 4 | 93 |
| α-helix | 245-275 | 31 | |
| α-helix | 278-282 | 5 | |
| α-helix | 286-289 | 4 | |
Chain B: 11 helices, 16 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 20-22 | 3 | |
| α-helix | 33-35 | 3 | |
| α-helix | 40 | 1 | |
| β-strand | 45-60 | 16 | 12 |
| β-strand | 70-81 | 12 | 12 |
| α-helix | 82-83 | 2 | |
| β-strand | 84-95 | 12 | 13 |
| β-strand | 98-106 | 9 | 13 |
| α-helix | 112-118 | 7 | |
| α-helix | 131-134 | 4 | |
| α-helix | 142-153 | 12 | |
| β-strand | 157-163 | 7 | 13 |
| α-helix | 166-168 | 3 | |
| β-strand | 178-182 | 5 | 13 |
| α-helix | 188-197 | 10 | |
| β-strand | 199 | 1 | 13 |
| β-strand | 202-203 | 2 | 13 |
| α-helix | 205-207 | 3 | |
| β-strand | 214-220 | 7 | 12 |
| β-strand | 274-286 | 13 | 12 |
| β-strand | 299 | 1 | 14 |
| β-strand | 311 | 1 | 15 |
| β-strand | 315 | 1 | 15 |
| β-strand | 320-325 | 6 | 12 |
| β-strand | 335-340 | 6 | 12 |
| β-strand | 355-359 | 5 | 12 |
| α-helix | 373-380 | 8 | |
Chain C: 22 helices, 9 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 5-9 | 5 | 16 |
| β-strand | 15-21 | 7 | 16 |
| α-helix | 32-43 | 12 | |
| α-helix | 98-99 | 2 | |
| α-helix | 102-104 | 3 | |
| α-helix | 115-131 | 17 | |
| α-helix | 133-138 | 6 | |
| β-strand | 150-152 | 3 | 16 |
| α-helix | 154-158 | 5 | |
| α-helix | 162-172 | 11 | |
| α-helix | 175-183 | 9 | |
| β-strand | 186-187 | 2 | 17 |
| α-helix | 191-194 | 4 | |
| β-strand | 199-200 | 2 | 17 |
| β-strand | 206-209 | 4 | 16 |
| α-helix | 215-218 | 4 | |
| β-strand | 226-229 | 4 | 16 |
| α-helix | 235-238 | 4 | |
| α-helix | 240-242 | 3 | |
| β-strand | 248-251 | 4 | 16 |
| α-helix | 252-262 | 11 | |
| β-strand | 267 | 1 | 18 |
| α-helix | 276-279 | 4 | |
| α-helix | 286-290 | 5 | |
| α-helix | 294-298 | 5 | |
| α-helix | 300-302 | 3 | |
| α-helix | 314-316 | 3 | |
| α-helix | 321-326 | 6 | |
| α-helix | 330-337 | 8 | |
| α-helix | 339-341 | 3 | |
| α-helix | 342-345 | 4 | |
Chain D: 8 helices, 7 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 3-12 | 10 | |
| β-strand | 18-20 | 3 | 19 |
| β-strand | 26-28 | 3 | 19 |
| β-strand | 37 | 1 | 19 |
| β-strand | 50-55 | 6 | 20 |
| β-strand | 60-65 | 6 | 20 |
| α-helix | 67-69 | 3 | |
| β-strand | 78-81 | 4 | 20 |
| α-helix | 82-83 | 2 | |
| α-helix | 86-96 | 11 | |
| α-helix | 102-127 | 26 | |
| β-strand | 133-135 | 3 | 21 |
| α-helix | 139-155 | 17 | |
| α-helix | 158-172 | 15 | |
| α-helix | 184-190 | 7 | |
Chain e: 5 helices, 4 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 55-57 | 3 | |
| α-helix | 58-60 | 3 | |
| β-strand | 72-76 | 5 | 94 |
| α-helix | 79-82 | 4 | |
| α-helix | 83-85 | 3 | |
| β-strand | 92-96 | 5 | 94 |
| α-helix | 102-115 | 14 | |
| β-strand | 119 | 1 | 94 |
| β-strand | 127-129 | 3 | 21 |
32 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| Saccharomyces cerevisiae S288c 35S pre-ribosomal RNA miscRNA | 1 | RNA | 3395 | Saccharomyces cerevisiae BY4741 | |
| 5.8S rRNA | 2 | RNA | 158 | Saccharomyces cerevisiae BY4741 | |
| ITS2 | 6 | RNA | 232 | Saccharomyces cerevisiae BY4741 | |
| Ribosome biogenesis protein NSA1 | A | protein | 463 | Saccharomyces cerevisiae BY4741 | P53136 (AlphaFold model) |
| 60S ribosomal protein L3 | B | protein | 387 | Saccharomyces cerevisiae BY4741 | P14126 (AlphaFold model) |
| 60S ribosomal protein L4-A | C | protein | 362 | Saccharomyces cerevisiae BY4741 | P10664 (AlphaFold model) |
| Protein MAK16 | D | protein | 306 | Saccharomyces cerevisiae BY4741 | P10962 (AlphaFold model) |
| 60S ribosomal protein L6-A | E | protein | 176 | Saccharomyces cerevisiae BY4741 | Q02326 |
| 60S ribosomal protein L7-A | F | protein | 244 | Saccharomyces cerevisiae BY4741 | P05737 |
| 60S ribosomal protein L8-A | G | protein | 256 | Saccharomyces cerevisiae BY4741 | P17076 |
| Ribosome production factor 1 | I | protein | 295 | Saccharomyces cerevisiae BY4741 | P38805 |
| Proteasome-interacting protein CIC1 | K | protein | 376 | Saccharomyces cerevisiae BY4741 | P38779 |
31 more molecules are not listed.
Sequence of entity 1 (1), FASTA
>6C0F_1 Saccharomyces cerevisiae S288c 35S pre-ribosomal RNA miscRNA (chains 1)
GUUUGACCUCAAAUCAGGUAGGAGUACCCGCUGAACUUAAGCAUAUCAAUAAGCGGAGGA
AAAGAAACCAACCGGGAUUGCCUUAGUAACGGCGAGUGAAGCGGCAAAAGCUCAAAUUUG
AAAUCUGGUACCUUCGGUGCCCGAGUUGUAAUUUGGAGAGGGCAACUUUGGGGCCGUUCC
UUGUCUAUGUUCCUUGGAACAGGACGUCAUAGAGGGUGAGAAUCCCGUGUGGCGAGGAGU
GCGGUUCUUUGUAAAGUGCCUUCGAAGAGUCGAGUUGUUUGGGAAUGCAGCUCUAAGUGG
GUGGUAAAUUCCAUCUAAAGCUAAAUAUUGGCGAGAGACCGAUAGCGAACAAGUACAGUG
AUGGAAAGAUGAAAAGAACUUUGAAAAGAGAGUGAAAAAGUACGUGAAAUUGUUGAAAGG
GAAGGGCAUUUGAUCAGACAUGGUGUUUUGUGCCCUCUGCUCCUUGUGGGUAGGGGAAUC
UCGCAUUUCACUGGGCCAGCAUCAGUUUUGGUGGCAGGAUAAAUCCAUAGGAAUGUAGCU
UGCCUCGGUAAGUAUUAUAGCCUGUGGGAAUACUGCCAGCUGGGACUGAGGACUGCGACG
UAAGUCAAGGAUGCUGGCAUAAUGGUUAUAUGCCGCCCGUCUUGAAACACGGACCAAGGA
GUCUAACGUCUAUGCGAGUGUUUGGGUGUAAAACCCAUACGCGUAAUGAAAGUGAACGUA
GGUUGGGGCCUCGCAAGAGGUGCACAAUCGACCGAUCCUGAUGUCUUCGGAUGGAUUUGA
GUAAGAGCAUAGCUGUUGGGACCCGAAAGAUGGUGAACUAUGCCUGAAUAGGGUGAAGCC
AGAGGAAACUCUGGUGGAGGCUCGUAGCGGUUCUGACGUGCAAAUCGAUCGUCGAAUUUG
GGUAUAGGGGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCUGCCGAAGUUUCCCU
CAGGAUAGCAGAAGCUCGUAUCAGUUUUAUGAGGUAAAGCGAAUGAUUAGAGGUUCCGGG
GUCGAAAUGACCUUGACCUAUUCUCAAACUUUAAAUAUGUAAGAAGUCCUUGUUACUUAA
UUGAACGUGGACAUUUGAAUGAAGAGCUUUUAGUGGGCCAUUUUUGGUAAGCAGAACUGG
CGAUGCGGGAUGAACCGAACGUAGAGUUAAGGUGCCGGAAUACACGCUCAUCAGACACCA
CAAAAGGUGUUAGUUCAUCUAGACAGCCGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAA
GGAGUGUGUAACAACUCACCGGCCGAAUGAACUAGCCCUGAAAAUGGAUGGCGCUCAAGC
GUGUUACCUAUACUCUACCGUCAGGGUUGAUAUGAUGCCCUGACGAGUAGGCAGGCGUGG
AGGUCAGUGACGAAGCCUAGACCGUAAGGUCGGGUCGAACGGCCUCUAGUGCAGAUCUUG
GUGGUAGUAGCAAAUAUUCAAAUGAGAACUUUGAAGACUGAAGUGGGGAAAGGUUCCACG
UCAACAGCAGUUGGACGUGGGUUAGUCGAUCCUAAGAGAUGGGGAAGCUCCGUUUCAAAG
GCCUGAUUUUAUGCAGGCCACCAUCGAAAGGGAAUCCGGUUAAGAUUCCGGAACCUGGAU
AUGGAUUCUUCACGGUAACGUAACUGAAUGUGGAGACGUCGGCGCGAGCCCUGGGAGGAG
UUAUCUUUUCUUCUUAACAGCUUAUCACCCCGGAAUUGGUUUAUCCGGAGAUGGGGUUUA
UGGCUGGAAGAGGCCAGCACCUUUGCUGGCUCCGGUGCGCUUGUGACGGCCCGUGAAAAU
CCACAGGAAGGAAUAGUUUUCAUGCCAGGUCGUACUGAUAACCGCAGCAGGUCUCCAAGG
UGAACAGCCUCUAGUUGAUAGAAUAAUGUAGAUAAGGGAAGUCGGCAAAAUAGAUCCGUA
ACUUCGGGAUAAGGAUUGGCUCUAAGGGUCGGGUAGUGAGGGCCUUGGUCAGACGCAGCG
GGCGUGCUUGUGGACUGCUUGGUGGGGCUUGCUCUGCUAGGCGGACUACUUGCGUGCCUU
GUUGUAGACGGCCUUGGUAGGUCUCUUGUAGACCGUCGCUUGCUACAAUUAACGAUCAAC
UUAGAACUGGUACGGACAAGGGGAAUCUGACUGUCUAAUUAAAACAUAGCAUUGCGAUGG
UCAGAAAGUGAUGUUGACGCAAUGUGAUUUCUGCCCAGUGCUCUGAAUGUCAAAGUGAAG
AAAUUCAACCAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGUAGCCAAAU
GCCUCGUCAUCUAAUUAGUGACGCGCAUGAAUGGAUUAACGAGAUUCCCACUGUCCCUAU
CUACUAUCUAGCGAAACCACAGCCAAGGGAACGGGCUUGGCAGAAUCAGCGGGGAAAGAA
GACCCUGUUGAGCUUGACUCUAGUUUGACAUUGUGAAGAGACAUAGAGGGUGUAGAAUAA
GUGGGAGCUUCGGCGCCAGUGAAAUACCACUACCUUUAUAGUUUCUUUACUUAUUCAAUG
AAGCGGAGCUGGAAUUCAUUUUCCACGUUCUAGCAUUCAAGGUCCCAUUCGGGGCUGAUC
CGGGUUGAAGACAUUGUCAGGUGGGGAGUUUGGCUGGGGCGGCACAUCUGUUAAACGAUA
ACGCAGAUGUCCUAAGGGGGGCUCAUGGAGAACAGAAAUCUCCAGUAGAACAAAAGGGUA
AAAGCCCCCUUGAUUUUGAUUUUCAGUGUGAAUACAAACCAUGAAAGUGUGGCCUAUCGA
UCCUUUAGUCCCUCGGAAUUUGAGGCUAGAGGUGCCAGAAAAGUUACCACAGGGAUAACU
GGCUUGUGGCAGUACAAGCGUUCAUAGCGACAUUGCUUUUUGAUUCUUCGAUGUCGGCUC
UUCCUAUCAUACCGAAGCAGAAUUCGGUAAGCGUUGGAUUGUUCACCCACUAAUAGGGAA
CGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCUACUGAUGAAUGUUAC
CGCAAUAGUAAUUGAACUUAGUACGAGAGGAACAGUUCAUUCGGAUAAUUGGUUUUUGCG
GCUGUCUGAUCAGGCAUUGCCGCGAAGCUACCAUCCGCUGGAUUAUGGCUGAACGCCUCU
AAGUCAGAAUCCAUGCUAGAACGCGGUGAUUUCUUUGCUCCACACAAUAUAGAUGGAUAC
GAAUAAGGCGUCCUUGUGGCGUCGCUGAACCAUAGCAGGCUAGCAACGGUGCACUUGGCG
GAAAGGCCUUGGGUGCUUGCUGGCGAAUUGCAAUGUCAUUUUGCGUGGGGAUAAAUCAUU
UGUAUACGACUUAGAUGUACAACGGGGUAUUGUAAGCAGUAGAGUAGCCUUGUUGUUACG
AUCUGCUGAGAUUAAGCCUUUGUUGUCUGAUUUGU
Sequence of entity 2 (2), FASTA
>6C0F_2 5.8S rRNA (chains 2)
AAACUUUCAACAACGGAUCUCUUGGUUCUCGCAUCGAUGAAGAACGCAGCGAAAUGCGAU
ACGUAAUGUGAAUUGCAGAAUUCCGUGAAUCAUCGAAUCUUUGAACGCACAUUGCGCCCC
UUGGUAUUCCAGGGGGCAUGCCUGUUUGAGCGUCAUUU
Sequence of entity 3 (6), FASTA
>6C0F_3 ITS2 (chains 6)
CCUUCUCAAACAUUCUGUUUGGUAGUGAGUGAUACUCUUUGGAGUUAACUUGAAAUUGCU
GGCCUUUUCAUUGGAUGUUUUUUUUCCAAAGAGAGGUUUCUCUGCGUGCUUGAGGUAUAA
UGCAAGUACGGUCGUUUUAGGUUUUACCAACUGCGGCUAAUCUUUUUUUAUACUGAGCGU
AUUGGAACGUUAUCGAUAAGAAGAGAGCGUCUAGGCGAACAAUGUUCUUAAA
Sequence of entity 4 (A), FASTA
>6C0F_4 Ribosome biogenesis protein NSA1 (chains A)
MRLLVSCVDSGSIKEVLCNIGTDTSVQSALQPFHVAPHLAEGLKAYVDRMWVISEDEAIL
ARNSGVVELVKISKHLKENEALQVDPKGESKNEKSLSDDLPKFDISEFEITSSVSDLFDD
AKLESLSSKSVKRTKLVDGFVTLCPIKKDSSNNTFVAATKSGLLHIIKKGEDKKLIKLAS
LGLKAPVEFLQLYDLEDTDTDKYIFAYGGEENLIKLVEIDSSFQSLKQIWEAKNVKNDRL
DMRVPVWPMALRFLEPSPGKTEKGKLNYQFAAITRWSHLTKYSTQHGRKPFAQIDLLPNR
EPLSQMEVFDAKGENVVSSLGNFQSETFNELNVITTDYKKNVFKFDGNGRMLGKVGRDDI
TGSSTYIHVHDGKYLLQGGLDRYVRIFDIKTNKMLVKVYVGSRINFIVMLDDVEIEMPLS
PSAKAAKGKQKRKVTELEEDADELWNKLEGKVAASKASKKSKI
Sequence of entity 5 (B), FASTA
>6C0F_5 60S ribosomal protein L3 (chains B)
MSHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDL
DRPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYK
NWYKSKKKAFTKYSAKYAQDGAGIERELARIKKYASVVRVLVHTQIRKTPLAQKKAHLAE
IQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKKLPR
KTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKGDDEANGATSFDR
TKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLKWID
TASKFGKGRFQTPAEKHAFMGTLKKDL
Sequence of entity 6 (C), FASTA
>6C0F_6 60S ribosomal protein L4-A (chains C)
MSRPQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQT
SAESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRY
ATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLK
VLKSKKLRAGKGKYRNRRWTQRRGPLVVYAEDNGIVKALRNVPGVETANVASLNLLQLAP
GAHLGRFVIWTEAAFTKLDQVWGSETVASSKVGYTLPSHIISTSDVTRIINSSEIQSAIR
PAGQATQKRTHVLKKNPLKNKQVLLRLNPYAKVFAAEKLGSKKAEKTGTKPAAVFTETLK
HD
Sequence of entity 7 (D), FASTA
>6C0F_7 Protein MAK16 (chains D)
MSDEIVWQVINQSFCSHRIKAPNGQNFCRNEYNVTGLCTRQSCPLANSKYATVKCDNGKL
YLYMKTPERAHTPAKLWERIKLSKNYTKALQQIDEHLLHWSKFFRHKCKQRFTKLTQVMI
TERRLALREEERHYVGVAPKVKRREQNRERKALVAAKIEKAIEKELMDRLKSGAYGDKPL
NVDEKVWKKIMGQMEEENSQDEEEDWDEEEESDDGEVEYVADDGEGEYVDVDDLEKWLAD
SDREASSASESESDSESESDSDSDEENKNSAKRRKKGTSAKTKRPKVEIEYEEEHEVQNA
EQEVAQ
Sequence of entity 8 (E), FASTA
>6C0F_8 60S ribosomal protein L6-A (chains E)
MSAQKAPKWYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLED
NTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEAN
LFPEQQNKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF
Sequence of entity 9 (F), FASTA
>6C0F_9 60S ribosomal protein L7-A (chains F)
MAAEKILTPESQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAER
NIIQAKRDAKAAGSYYVEAQHKLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVT
KATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILS
IDDLIHEIITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGSFGNREEFINKLV
KSMN
Sequence of entity 10 (G), FASTA
>6C0F_10 60S ribosomal protein L8-A (chains G)
MAPGKKVAPAPFGAKSTKSNKTRNPLTHSTPKNFGIGQAVQPKRNLSRYVKWPEYVRVQR
QKKILSIRLKVPPTIAQFQYTLDRNTAAETFKLFNKYRPETAAEKKERLTKEAAAVAEGK
SKQDASPKPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIV
KGKARLGTLVNQKTSAVAALTEVRAEDEAALAKLVSTIDANFADKYDEVKKHWGGGILGN
KAQAKMDKRAKNSDSA
Sequence of entity 11 (I), FASTA
>6C0F_11 Ribosome production factor 1 (chains I)
MALGNEINITNKLKRQEIFADIKHEKNKERHTMRRKRAKEERENPELREQRLKENVTQTI
ENTRVYDETINKEVEGDEDDLMRYFNSNSNEPPKIFLTTNVNAKKSAYEFANILIEILPN
VTFVKRKFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFVE
VKKIVGHGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQVITLHNQRDYIF
FRRHRYVFKDNERVGLQELGPQFTLKLKRLQRGIKEETEWEHKPEMDKEKKKFYL
Sequence of entity 12 (K), FASTA
>6C0F_12 Proteasome-interacting protein CIC1 (chains K)
MAKKSNSKKSTPVSTPSKEKKKVIEKKSSTAIPRERVIKAVNELIKFTSKPQDENNEEGN
NGKKNLLEDDEEELKKDLQLIVVNNKSFTGTSKSFKLKLLNVKHSFYKPWKEASATAVKD
FKVLLILKDSDIKKVSEDDLFDQLDSEGIKVDEIICGKDLKTVYKAYEARNAFISQFSLI
LADDSIVTSLPKLMGGKAYNKVETTPISIRTHANKEFSLTTLTNNIKKVYMNQLPVKLPR
GTTLNVHLGNLEWLRPEEFVDNVELISEQLIKAYQIRSIFIKTNRSPVLPLYYNQDVLDE
LEAKKDKIEETHEDDMVTIDGVQVHLSTFNKGLMEIANPSELGSIFSKQINNAKKRSSSE
LEKESSESEAVKKAKS
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| ZN | Zinc ion | Zn | 3 |
Primary citation
Modular assembly of the nucleolar pre-60S ribosomal subunit. Sanghai, Z.A., Miller, L., Molloy, K.R. et al. Nature (2018) 556:126-129. DOI 10.1038/nature26156 · PubMed
Other PDB entries of the same protein (UniProt P53136 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 5SUI 1.3 Å, Ribosome assembly factor NSA1: C-terminal truncation
- 6EN7 2.4 Å, Crystal structure of the ribosome assembly factor Nsa1
- 8V83 2.53 Å, 60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)
- 8V84 2.7 Å, 60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)
- 5SUM 2.8 Å, Ribosome assembly factor NSA1
- 6EM3 3.2 Å, State A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of…
- 7OHX 3.3 Å, Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34…
- 7OHW 3.5 Å, Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25…
- 6EM1 3.6 Å, State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S…
- 5Z3G 3.65 Å, Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)
- 6EM4 4.1 Å, State B architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of…
- 6EM5 4.3 Å, State D architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of…
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