Ig-like domain-containing protein is a 236-residue protein from Homo sapiens. This is its AlphaFold structure prediction, created 1 Jun 2022. UniProt accession: Q6GMX0.
Explore in 3D Color by confidence AlphaFold DB UniProt
The mean pLDDT of this model is 92.3 (very high overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 87% |
| 70 to 90 | Confident: backbone generally right | 3% |
| 50 to 70 | Low: treat with caution | 4% |
| Below 50 | Very low: often disordered regions | 5% |
What pLDDT means and how to read it
Cell membrane, Secreted
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 6UCF | X-ray | 1.29 Å | L=23-235 |
| 6UCE | X-ray | 1.38 Å | L=23-236 |
| 2D7T | X-ray | 1.7 Å | L=23-130 |
| 6UBI | X-ray | 1.9 Å | B/E=23-234 |
| 8CWK | X-ray | 2.37 Å | B=23-236 |
| 5O1R | X-ray | 2.86 Å | L/M=23-236 |
| 5VOB | X-ray | 3.02 Å | L=3-236 |
| 1BEY | X-ray | 3.25 Å | L=23-236 |
| 6B70 | EM | 3.7 Å | D/F=23-233 |
| 5VOC | X-ray | 3.99 Å | L=3-117, L=126-236 |
| 6B7Z | EM | 6.5 Å | D/F=23-233 |
MolViewer loads the AlphaFold model straight from AlphaFold DB into your browser. Show it as a cartoon, color by pLDDT, measure distances and angles, and load a PDB structure next to it to compare.