Igh protein (Igh) is a 463-residue protein from Mus musculus. This is its AlphaFold structure prediction, created 1 Jun 2022. UniProt accession: Q99LC4.
Explore in 3D Color by confidence AlphaFold DB UniProt
The mean pLDDT of this model is 86.4 (confident overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 61% |
| 70 to 90 | Confident: backbone generally right | 28% |
| 50 to 70 | Low: treat with caution | 5% |
| Below 50 | Very low: often disordered regions | 7% |
What pLDDT means and how to read it
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 6C5K | X-ray | 1.75 Å | A/H=20-239 |
| 6C5I | X-ray | 1.89 Å | H=20-239 |
| 6C5H | X-ray | 1.99 Å | H=20-239 |
| 6C5J | X-ray | 2.29 Å | H=20-239 |
| 1GIG | X-ray | 2.3 Å | H=20-121, H=128-238 |
| 3HKF | X-ray | 2.5 Å | A=252-463 |
| 1JHK | X-ray | 2.51 Å | H=20-241 |
| 2A1W | X-ray | 2.7 Å | H/I=20-241 |
| 5MP3 | X-ray | 2.75 Å | A/H=21-239 |
| 4Q0X | X-ray | 2.9 Å | H=20-239 |
| 1E6J | X-ray | 3.0 Å | H=20-238 |
| 1JNL | X-ray | 3.0 Å | H=20-241 |
| 2NTF | X-ray | 3.18 Å | B/H=20-239 |
| 1JNN | X-ray | 3.2 Å | H=20-239 |
| 2VIR | X-ray | 3.25 Å | B=20-121, B=128-238 |
| 2VIS | X-ray | 3.25 Å | B=20-121, B=128-238 |
| 2VIT | X-ray | 3.25 Å | B=20-121, B=128-238 |
| 1AFV | X-ray | 3.7 Å | H/K=20-239 |
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