Zinc finger BED domain-containing protein 3 (Zbed3) is a 228-residue protein from Mus musculus. This is its AlphaFold structure prediction, created 1 Aug 2025. UniProt accession: Q9D0L1.
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The mean pLDDT of this model is 73.8 (confident overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 35% |
| 70 to 90 | Confident: backbone generally right | 19% |
| 50 to 70 | Low: treat with caution | 27% |
| Below 50 | Very low: often disordered regions | 18% |
What pLDDT means and how to read it
Acts as a positive regulator in the activation of the canonical Wnt/beta-catenin signaling pathway by stabilizing cytoplasmic beta-catenin (PubMed:19141611). Involved in transcription activation of Wnt target gene expression (PubMed:19141611). Plays a role in symmetric division of blastomeres in the early stages of embryogenesis via regulation of mitotic spindle central positioning and organization of the F-actin filament network (PubMed:28992324). Component of cytoplasmic lattices, which consist in fibrous structures found in the cytoplasm of oocytes and preimplantation embryos: they are required to store maternal proteins critical for embryonic development, such as ribosomal proteins,…
Component of cytoplasmic lattices, at least composed of PADI6, NLRP4F, NLRP5, NLRP14, TLE6, KHDC3, OOEP and ZBED3 (PubMed:28992324, PubMed:31575650, PubMed:41845018, PubMed:41917274, PubMed:41986725, PubMed:41118754). Cytoplasmic lattices form a filamentous architecture; the external framework is built from PADI6 decamers and the subcortical maternal complexes (SCMC) (PubMed:41845018,…
Cytoplasm, Membrane, Secreted
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 9L4J | EM | 3.0 Å | E=34-89 |
| 9XRL | EM | 3.74 Å | 1/3/9=34-89 |
| 9SFP | EM | 4.2 Å | e=32-88 |
| 9W2M | EM | 4.2 Å | R/r=34-87 |
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