1JH5: STALL-1 of TNF family ligand

Crystal Structure of sTALL-1 of TNF family ligand. Determined by X-ray diffraction at 3.0 Å resolution. Released 8 Feb 2002.

Method: X-ray diffraction
Resolution: 3.0 Å
Organism: Homo sapiens
Chains: 10
Atoms: 11,430
Mol. weight: 162.45 kDa
Released: 8 Feb 2002

Explore 1JH5 in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

1JH5 contains 9 α-helices and 160 β-strands across 10 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chains A, B, C, E, F, G, H, I and J: 1 helix, 16 β-strands

Element	Residues	Length	Sheet
β-strand	5-10	6	1
α-helix	15-16	2
β-strand	17-19	3	2
β-strand	22-24	3	2
β-strand	27-33	7	1
β-strand	37-40	4	3
β-strand	43-46	4	3
β-strand	50-58	9	1
β-strand	59-60	2	4
β-strand	66-74	9	3
β-strand	85-94	10	3
β-strand	104-112	9	1
β-strand	117-121	5	3
β-strand	122	1	2
β-strand	129-130	2	4
β-strand	137-138	2	1
β-strand	141-142	2	1

Chain D: 0 helices, 16 β-strands

Element	Residues	Length	Sheet
β-strand	5-10	6	13
β-strand	17-19	3	14
β-strand	22-24	3	14
β-strand	27-33	7	13
β-strand	37-40	4	15
β-strand	43-46	4	15
β-strand	50-58	9	13
β-strand	59-60	2	16
β-strand	66-74	9	15
β-strand	85-94	10	15
β-strand	104-112	9	13
β-strand	117-121	5	15
β-strand	122	1	14
β-strand	129-130	2	16
β-strand	137-138	2	13
β-strand	141-142	2	13

Molecules and chains

Molecule	Chains	Type	Length	Organism	UniProt
Tumor necrosis factor ligand superfamily member 13B	A, B, C, D, E, F, G, H, I, J	protein	144	Homo sapiens	Q9Y275 (AlphaFold model)

Sequence of entity 1 (A, B, C, D, E, F, G, H, I, J), FASTA

>1JH5_1 TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 13B (chains A, B, C, D, E, F, G, H, I, J)
VTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLY
TDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETLPNNSCYSAGIAKLEEGDELQL
AIPRENAQISLDGDVTFFGALKLL

Primary citation

Crystal structure of sTALL-1 reveals a virus-like assembly of TNF family ligands. Liu, Y., Xu, L., Opalka, N. et al. Cell (2002) 108:383-394. DOI 10.1016/S0092-8674(02)00631-1 · PubMed

Other PDB entries of the same protein (UniProt Q9Y275 (AlphaFold model), which also has an AlphaFold model), best resolution first:

1KXG 2.0 Å, The 2.0 Ang Resolution Structure of BLyS, B Lymphocyte Stimulator.
5Y9J 2.05 Å, BAFF in complex with belimumab
4ZCH 2.43 Å, Single-chain human APRIL-BAFF-BAFF Heterotrimer
1OQE 2.5 Å, Crystal structure of sTALL-1 with BAFF-R
8ZUJ 2.58 Å, Pentagonal cluster of BAFF-BAFFR ectodomain complex
1OQD 2.6 Å, Crystal structure of sTALL-1 and BCMA
1KD7 2.8 Å, Crystal structure of an extracellular domain fragment of human BAFF
6FXN 2.9 Å, Crystal structure of human BAFF in complex with Fab fragment of anti-BAFF antibody…
1OSG 3.0 Å, Complex between BAFF and a BR3 derived peptide presented in a beta-hairpin scaffold
3V56 3.0 Å, Re-refinement of PDB entry 1OSG - Complex between BAFF and a BR3 derived peptide…
4V46 3.3 Å, Crystal structure of the BAFF-BAFF-R complex

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