1JQM: 50S Ribosomal protein L11

Fitting of L11 protein and elongation factor G (EF-G) in the cryo-em map of e. coli 70S ribosome bound with EF-G, GDP and fusidic acid. Determined by electron microscopy at 18.0 Å resolution. Released 7 Sept 2001.

Method

Electron microscopy

Resolution

18.0 Å

Organism

Escherichia coli

Chains

2

Atoms

824

Mol. weight

91.83 kDa

Released

7 Sept 2001

Explore 1JQM in 3D Show helices and sheets RCSB PDB PDBe

Molecules and chains

>1JQM_1 50S Ribosomal protein L11 (chains A)
AKKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVY
EDKSFTFIIKTPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSL
EAAMKIIEGTAKSMGIEVV

>1JQM_2 Elongation Factor G (chains B)
MAVKVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERE
RGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSET
VWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDV
LRMKAYTYGNDLGTDIREIPIPEEYLDNAREYHEKLVEVAADFDENIMLKYLEGEEPTEE
ELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVE
IHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHA
NHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKAD
QEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQ
VAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIP
AVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPV
ILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLR
SKTQGRGSFVMFFDHYQEVPKQVQEKLIKGQ

Primary citation

Localization of L11 protein on the ribosome and elucidation of its involvement in EF-G-dependent translocation. Agrawal, R.K., Linde, J., Sengupta, J. et al. J Mol Biol (2001) 311:777-787. DOI 10.1006/jmbi.2001.4907 · PubMed

Related structures

Other PDB entries of the same protein (UniProt P29395 (AlphaFold model), which also has an AlphaFold model), best resolution first:

• 1MMS 2.57 Å, Crystal structure of the ribosomal PROTEIN L11-RNA complex
• 4V42 5.5 Å, Crystal structure of the ribosome at 5.5 A resolution.
• 4V4R 5.9 Å, Crystal structure of the whole ribosomal complex.
• 4V4T 6.46 Å, Crystal structure of the whole ribosomal complex with a stop codon in the A-site.
• 4V4S 6.76 Å, Crystal structure of the whole ribosomal complex.
• 487D 7.5 Å, Seven ribosomal proteins fitted to a CRYO-electron microscopic map of the large 50S…
• 1R2W 9.0 Å, Coordinates of L11 with 58nts of 23S rRNA fitted into the cryo-EM map of the 70S ribosome
• 1R2X 9.0 Å, Coordinates of L11 with 58nts of 23S rRNA fitted into the cryo-EM map of EF-Tu ternary…
• 1PN7 10.8 Å, Coordinates of S12, L11 proteins and P-tRNA, from the 70S X-ray structure aligned to the…
• 1PN8 10.8 Å, Coordinates of S12, L11 proteins and E-site tRNA from 70S crystal structure separately…
• 2BCW 11.2 Å, Coordinates of the N-terminal domain of ribosomal protein L11,C-terminal domain of…
• 1EG0 11.5 Å, Fitting of components with known structure into an 11.5 a cryo-EM map of the e.coli 70S…

Browse structure collections

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