1T89: Human type III fc gamma receptor

Crystal structure of a human type III fc gamma receptor in complex with an fc fragment of IgG1 (hexagonal). Determined by X-ray diffraction at 3.5 Å resolution. Released 14 Sept 2004.

Method: X-ray diffraction
Resolution: 3.5 Å
Organism: Homo sapiens
Chains: 3
Atoms: 4,919
Mol. weight: 73.52 kDa
Released: 14 Sept 2004

Explore 1T89 in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

1T89 contains 17 α-helices and 68 β-strands across 3 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 5 helices, 26 β-strands

Element	Residues	Length	Sheet
β-strand	239-243	5	1
β-strand	258-266	9	1
β-strand	274-279	6	2
β-strand	282-283	2	2
β-strand	290	1	1
β-strand	293-295	3	1
β-strand	300-307	8	1
α-helix	308-309	2
α-helix	310-314	5
β-strand	319-324	6	2
β-strand	332-336	5	2
β-strand	344	1	3
β-strand	347-351	5	4
α-helix	355-357	3
β-strand	362	1	5
β-strand	365	1	6
β-strand	366-372	7	4
β-strand	373	1	3
β-strand	378	1	7
β-strand	381-382	2	8
β-strand	387	1	8
β-strand	391	1	6
α-helix	394-396	3
β-strand	397-398	2	4
β-strand	404-406	3	4
β-strand	410	1	6
β-strand	413	1	5
α-helix	414-418	5
β-strand	422-427	6	8
β-strand	428	1	7
β-strand	437-442	6	8

Chain B: 7 helices, 21 β-strands

Element	Residues	Length	Sheet
β-strand	240-243	4	9
α-helix	247-251	5
β-strand	258-266	9	9
β-strand	267	1	10
β-strand	270	1	10
β-strand	274	1	11
β-strand	278-279	2	12
β-strand	282	1	12
β-strand	300-307	8	9
α-helix	310-315	6
β-strand	319-323	5	12
β-strand	324	1	11
β-strand	332-336	5	12
α-helix	338-340	3
β-strand	344	1	13
β-strand	348-351	4	14
α-helix	352-354	3
α-helix	355-357	3
β-strand	364-372	9	14
β-strand	373	1	13
β-strand	378-382	5	15
β-strand	387	1	15
β-strand	391-393	3	14
α-helix	394-396	3
β-strand	404-411	8	14
α-helix	414-418	5
β-strand	423-428	6	15
β-strand	439-441	3	15

Chain C: 5 helices, 21 β-strands

Element	Residues	Length	Sheet
α-helix	6	1
β-strand	7	1	16
α-helix	8	1
β-strand	9-13	5	17
β-strand	18-20	3	18
β-strand	25-30	6	17
β-strand	40-44	5	19
β-strand	55-58	4	17
α-helix	63-65	3
β-strand	67-73	7	19
β-strand	76	1	19
β-strand	77	1	16
α-helix	79-81	3
β-strand	82-84	3	19
β-strand	85-87	3	18
β-strand	91-94	4	20
β-strand	108	1	21
β-strand	109-112	4	20
α-helix	113-115	3
β-strand	118-125	8	22
β-strand	128-135	8	22
β-strand	139	1	21
β-strand	150-158	9	22
β-strand	161-164	4	22
β-strand	165	1	20
β-strand	168-170	3	22

Molecules and chains

Molecule	Chains	Type	Length	Organism	UniProt
recombinant IgG1 heavy chain	A, B	protein	224	Homo sapiens	P01857 (AlphaFold model)
Low affinity immunoglobulin gamma Fc region receptor III-B	C	protein	176	Homo sapiens	O75015 (AlphaFold model)

Sequence of entity 1 (A, B), FASTA

>1T89_1 recombinant IgG1 heavy chain (chains A, B)
HTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVE
VHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQP
REPQVYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGS
FFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK

Sequence of entity 2 (C), FASTA

>1T89_2 Low affinity immunoglobulin gamma Fc region receptor III-B (chains C)
RTEDLPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDA
ATVNDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHK
VTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQGL

Primary citation

The structure of a human type III Fcgamma receptor in complex with Fc. Radaev, S., Motyka, S., Fridman, W.-H. et al. J Biol Chem (2001) 276:16469-16477. DOI 10.1074/jbc.M100350200 · PubMed

Other PDB entries of the same protein (UniProt P01857 (AlphaFold model), which also has an AlphaFold model), best resolution first:

4LLD 1.19 Å, Structure of wild-type IgG1 antibody heavy chain constant domain 1 and light chain…
3TV3 1.29 Å, Crystal structure of broad and potent HIV-1 neutralizing antibody PGT128 in complex with…
4LLQ 1.42 Å, Structure of redesigned IgG1 first constant and lambda domains (CH1:Clambda constant…
5HSF 1.52 Å, 1.52 Angstrom Crystal Structure of Fc fragment of Human IgG1.
6YT7 1.55 Å, Glycosylated knob/dummy-hole fc fragment
4NWU 1.6 Å, Crystal structure of APE1551, an anti-human NGF Fab with a nine amino acid insertion in…
1L6X 1.65 Å, Fc fragment of rituximab bound to a minimized version of the B-domain from protein A…
3TWC 1.65 Å, Crystal structure of broad and potent HIV-1 neutralizing antibody PGT127 in complex with…
5JIH 1.66 Å, Crystal structure of HER2 binding IgG1-Fc (Fcab STAB19)
3MCL 1.7 Å, Anti-beta-amyloid antibody c706 fab in space group P21
5U66 1.7 Å, Modified single helix from the B-domain of protein A bound to IgG1 Fc
6N35 1.75 Å, Anti-HIV-1 Fab 2G12 + Man1-2 re-refinement

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