3HKW: HCV NS5B genotype 1a

HCV NS5B genotype 1a in complex with 1,5 benzodiazepine inhibitor 6. Determined by X-ray diffraction at 1.55 Å resolution. Released 26 May 2010.

Method

X-ray diffraction

Resolution

1.55 Å

Organism

Hepatitis C virus subtype 1a

Chains

3

Atoms

15,127

Mol. weight

197.08 kDa

Ligands

IX6

Released

26 May 2010

Explore 3HKW in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

3HKW contains 126 α-helices and 80 β-strands across 3 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 43 helices, 28 β-strands

Molecules and chains

>3HKW_1 NS5B RNA-dependent RNA polymerase (chains A, B, C)
MASSMSYSWTGALVTPCAAEEQKLPINALSNSLLRHHNMVYSTTSRSACQRQKKVTFDRL
QVLDSHYQDVLKEVKAAASKVKANLLSVEEACSLTPPHSARSKFGYGAKDVRCHARKAVT
HINSVWKDLLEDSVTPIDTTIMAKNEVFCVQPEKGGRKPARLIVFPDLGVRVCEKMALYD
VVSKLPQAVMGSSYGFQYSPGQRVEFLVQAWKSKKSPMGFSYDTRCFDSTVTESDIRTEE
AIYQCCDLDPQARVAIKSLTERLYVGGPLTNSKGENCGYRRCRASGVLTTSCGNTLTCYI
KARAACRAAGLQDCTMLVCGDDLVVICESAGVQEDAASLRAFTEAMTRYSAPPGDPPQPE
YDLELITSCSSNVSVAHDGAGKRVYYLTRDPTTPLARAAWETARHTPVNSWLGNIIMFAP
TLWARMILMTHFFSVLIARDQLEQALDCEIYGACYSIEPLDLPPIIQRLHGLSAFSLHSY
SPGEINRVAACLRKLGVPPLRAWRHRARSVRAKLLSRGGRAAICGKYLFNWAVRTKLKLT
PIAAAGQLDLSGWFTAGYSGGDIYHSVSRARPRLEHHHHHH

Ligands and cofactors

Water and common crystallization additives (GOL, SO4) are not listed.

Primary citation

1a/1b subtype profiling of nonnucleoside polymerase inhibitors of hepatitis C virus. Nyanguile, O., Devogelaere, B., Vijgen, L. et al. J Virol (2010) 84:2923-2934. DOI 10.1128/JVI.01980-09 · PubMed

Related structures

Other PDB entries of the same protein (UniProt P26664 (AlphaFold model), which also has an AlphaFold model), best resolution first:

• 3RC4 1.5 Å, Molecular mechanisms of viral and host-cell substrate recognition by HCV NS3/4A protease
• 7MME 1.56 Å, Crystal structure of HCV NS3/4A D168A protease in complex with JZ01-15
• 3RC5 1.6 Å, Molecular mechanisms of viral and host-cell substrate recognition by HCV NS3/4A protease
• 7MMA 1.65 Å, Crystal structure of HCV NS3/4A protease in complex with NR01-145
• 7MML 1.7 Å, Crystal structure of HCV NS3/4A D168A protease in complex with NR01-145
• 6P6L 1.73 Å, HCV NS3/4A protease domain of genotype 1a in complex with glecaprevir
• 6P6R 1.75 Å, HCV NS3/4A protease domain of genotype 1a3a chimera in complex with glecaprevir
• 7MM3 1.78 Å, Crystal structure of HCV NS3/4A protease in complex with NR01-127
• 5VOJ 1.8 Å, Crystal structure of HCV NS3/4A protease in complex with JZ01-15, an analogue of…
• 3QGI 1.8 Å, Crystal structure of the hepatitis C virus NS5B RNA-dependent RNA polymerase genotype 1a…
• 5VP9 1.86 Å, Crystal structure of HCV NS3/4A protease in complex with AM-07, an analogue of 5172-mcP1P3
• 7MM4 1.89 Å, Crystal structure of HCV NS3/4A protease in complex with NR01-115

Browse structure collections

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