4DBB: PDB entry 4DBB

The PTB domain of Mint1 is autoinhibited by a helix in the C-terminal linker region. Determined by X-ray diffraction at 1.9 Å resolution. Released 7 Mar 2012.

Method
X-ray diffraction
Resolution
1.9 Å
Organism
Rattus norvegicus
Chains
1
Atoms
1,310
Mol. weight
18.87 kDa
Ligands
IPA
Released
7 Mar 2012

Explore 4DBB in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

4DBB contains 8 α-helices and 7 β-strands across 1 chain. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 8 helices, 7 β-strands

ElementResiduesLengthSheet
β-strand460-475161
α-helix478-4803
α-helix481-49313
β-strand517-52481
β-strand527-53261
β-strand538-54361
α-helix544-5463
β-strand547-55371
β-strand556-56381
α-helix5641
β-strand587-59591
α-helix599-61416
α-helix615-6173
α-helix625-6273
α-helix630-63910

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
Amyloid beta A4 precursor protein-binding family A member 1Aprotein162Rattus norvegicusO35430 (AlphaFold model)
Sequence of entity 1 (A), FASTA
>4DBB_1 Amyloid beta A4 precursor protein-binding family A member 1 (chains A)
DPEDLIDGIIFAANYLGSTQLLSDKTPSKNVRMMQAQEAVSRIKPEGESQPMTEVDLFIS
TQRIKVLNADTQEPMMDHPLRTISYIADIGNIVVLMARRRMPRSQYKMICHVFESEDAQL
IAQSIGQAFSVAYQEFLRANGINPEDLSQKEYSDLLNTQDMY

Ligands and cofactors

IDNameFormulaCopies
IPAIsopropyl alcoholC3 H8 O2

Water and common crystallization additives (GOL, ACY, CL) are not listed.

Primary citation

Autoinhibition of Mint1 adaptor protein regulates amyloid precursor protein binding and processing. Matos, M.F., Xu, Y., Dulubova, I. et al. Proc Natl Acad Sci U S A (2012) 109:3802-3807. DOI 10.1073/pnas.1119075109 · PubMed

Other PDB entries of the same protein (UniProt O35430 (AlphaFold model), which also has an AlphaFold model), best resolution first:

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