4DF7: Thermonuclease

Crystal structure of Staphylococcal nuclease variant Delta+PHS V23L/V99I at cryogenic temperature. Determined by X-ray diffraction at 1.5 Å resolution. Released 1 Feb 2012.

Method
X-ray diffraction
Resolution
1.5 Å
Organism
Staphylococcus aureus
Chains
1
Atoms
1,194
Mol. weight
16.61 kDa
Ligands
THP, CA
Released
1 Feb 2012

Explore 4DF7 in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

4DF7 contains 5 α-helices and 9 β-strands across 1 chain. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 5 helices, 9 β-strands

ElementResiduesLengthSheet
β-strand10-1781
β-strand22-2761
β-strand30-3671
β-strand39-4022
α-helix41-433
α-helix55-6814
β-strand72-7541
β-strand8211
β-strand88-9471
β-strand97-9821
α-helix99-1057
β-strand110-11122
α-helix122-13413
α-helix138-1403

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
ThermonucleaseAprotein143Staphylococcus aureusP00644 (AlphaFold model)
Sequence of entity 1 (A), FASTA
>4DF7_1 Thermonuclease (chains A)
ATSTKKLHKEPATLIKAIDGDTLKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMV
ENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMINEALVRQGLAKVAYVYKGNNTHEQLLR
KAEAQAKKEKLNIWSEDNADSGQ

Ligands and cofactors

IDNameFormulaCopies
THPThymidine-3',5'-diphosphateC10 H16 N2 O11 P21
CACalcium ionCa1

Primary citation

Pressure effects in proteins. Caro, J.A., Schlessman, J.L., Garcia-Moreno E., B. To be published.

Other PDB entries of the same protein (UniProt P00644 (AlphaFold model), which also has an AlphaFold model), best resolution first:

Browse structure collections

About this viewer

MolViewer shows 4DF7 directly in your browser with nothing to install. Switch between cartoon, ball-and-stick, spacefill and surface views, color by chain, secondary structure or B-factor, measure distances, angles and dihedrals, and share or embed the view.