4L75: Ca2+-bound D184N mutant MthK RCK domain
Ca2+-bound D184N mutant MthK RCK domain at 2.4 Angstrom. Determined by X-ray diffraction at 2.39 Å resolution. Released 23 Oct 2013.
- Method
- X-ray diffraction
- Resolution
- 2.39 Å
- Organism
- Methanothermobacter thermautotrophicus
- Chains
- 6
- Atoms
- 10,580
- Mol. weight
- 161.56 kDa
- Ligands
- CA
- Released
- 23 Oct 2013
Explore 4L75 in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
4L75 contains 77 α-helices and 80 β-strands across 6 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain A: 13 helices, 14 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 113-117 | 5 | |
| β-strand | 118-121 | 4 | 1 |
| α-helix | 125-133 | 9 | |
| β-strand | 139-143 | 5 | 1 |
| α-helix | 146-148 | 3 | |
| α-helix | 149-154 | 6 | |
| β-strand | 158-161 | 4 | 1 |
| α-helix | 167-172 | 6 | |
| β-strand | 180-183 | 4 | 1 |
| α-helix | 188-201 | 14 | |
| β-strand | 207-210 | 4 | 1 |
| α-helix | 214-216 | 3 | |
| α-helix | 217-223 | 7 | |
| β-strand | 227-229 | 3 | 1 |
| α-helix | 231-240 | 10 | |
| α-helix | 247-254 | 8 | |
| β-strand | 263-268 | 6 | 2 |
| β-strand | 273 | 1 | 3 |
| β-strand | 279 | 1 | 4 |
| α-helix | 280-283 | 4 | |
| α-helix | 285-289 | 5 | |
| β-strand | 292-298 | 7 | 2 |
| β-strand | 301-304 | 4 | 2 |
| β-strand | 311 | 1 | 4 |
| β-strand | 317-322 | 6 | 2 |
| α-helix | 324-333 | 10 | |
| β-strand | 336 | 1 | 3 |
Chain B: 14 helices, 14 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 118-121 | 4 | 5 |
| α-helix | 125-133 | 9 | |
| β-strand | 139-143 | 5 | 5 |
| α-helix | 146-148 | 3 | |
| α-helix | 149-154 | 6 | |
| β-strand | 158-161 | 4 | 5 |
| α-helix | 167-172 | 6 | |
| α-helix | 175-177 | 3 | |
| β-strand | 180-183 | 4 | 5 |
| α-helix | 188-201 | 14 | |
| β-strand | 206-210 | 5 | 5 |
| α-helix | 214-216 | 3 | |
| α-helix | 217-223 | 7 | |
| β-strand | 227-229 | 3 | 5 |
| α-helix | 231-240 | 10 | |
| α-helix | 247-255 | 9 | |
| β-strand | 263-268 | 6 | 6 |
| β-strand | 273 | 1 | 7 |
| β-strand | 279 | 1 | 8 |
| α-helix | 280-283 | 4 | |
| α-helix | 285-289 | 5 | |
| β-strand | 292-298 | 7 | 6 |
| β-strand | 301-304 | 4 | 6 |
| β-strand | 311 | 1 | 8 |
| β-strand | 317-322 | 6 | 6 |
| α-helix | 324-334 | 11 | |
| β-strand | 336 | 1 | 7 |
| α-helix | 337 | 1 | |
Chain C: 12 helices, 12 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 117-121 | 5 | 9 |
| α-helix | 125-133 | 9 | |
| β-strand | 138-143 | 6 | 9 |
| α-helix | 146-148 | 3 | |
| α-helix | 149-154 | 6 | |
| β-strand | 158-161 | 4 | 9 |
| α-helix | 167-172 | 6 | |
| β-strand | 180-183 | 4 | 9 |
| α-helix | 188-201 | 14 | |
| β-strand | 207-210 | 4 | 9 |
| α-helix | 214-216 | 3 | |
| α-helix | 217-223 | 7 | |
| β-strand | 227-229 | 3 | 9 |
| α-helix | 231-240 | 10 | |
| α-helix | 247-255 | 9 | |
| β-strand | 263-268 | 6 | 10 |
| β-strand | 279 | 1 | 11 |
| α-helix | 280-283 | 4 | |
| α-helix | 285-289 | 5 | |
| β-strand | 292-298 | 7 | 10 |
| β-strand | 301-304 | 4 | 10 |
| β-strand | 311 | 1 | 11 |
| β-strand | 317-322 | 6 | 10 |
| α-helix | 324-333 | 10 | |
Chain D: 13 helices, 14 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 118-121 | 4 | 12 |
| α-helix | 125-133 | 9 | |
| β-strand | 139-143 | 5 | 12 |
| α-helix | 146-148 | 3 | |
| α-helix | 149-154 | 6 | |
| β-strand | 158-161 | 4 | 12 |
| α-helix | 167-172 | 6 | |
| β-strand | 180-183 | 4 | 12 |
| α-helix | 188-199 | 12 | |
| β-strand | 207-210 | 4 | 12 |
| α-helix | 214-216 | 3 | |
| α-helix | 217-223 | 7 | |
| β-strand | 227-229 | 3 | 12 |
| α-helix | 231-240 | 10 | |
| α-helix | 247-255 | 9 | |
| β-strand | 263-268 | 6 | 13 |
| β-strand | 273 | 1 | 14 |
| β-strand | 279 | 1 | 15 |
| α-helix | 280-283 | 4 | |
| α-helix | 285-289 | 5 | |
| β-strand | 292-298 | 7 | 13 |
| β-strand | 301-304 | 4 | 13 |
| β-strand | 311 | 1 | 15 |
| β-strand | 317-322 | 6 | 13 |
| α-helix | 324-333 | 10 | |
| β-strand | 336 | 1 | 14 |
| α-helix | 337 | 1 | |
Chain E: 12 helices, 12 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 118-121 | 4 | 16 |
| α-helix | 125-133 | 9 | |
| β-strand | 139-143 | 5 | 16 |
| α-helix | 146-148 | 3 | |
| α-helix | 149-154 | 6 | |
| β-strand | 158-161 | 4 | 16 |
| α-helix | 167-172 | 6 | |
| β-strand | 180-183 | 4 | 16 |
| α-helix | 188-199 | 12 | |
| β-strand | 207-210 | 4 | 16 |
| α-helix | 214-216 | 3 | |
| α-helix | 217-223 | 7 | |
| β-strand | 227-229 | 3 | 16 |
| α-helix | 231-241 | 11 | |
| α-helix | 247-255 | 9 | |
| β-strand | 263-268 | 6 | 17 |
| β-strand | 279 | 1 | 18 |
| α-helix | 280-283 | 4 | |
| α-helix | 285-289 | 5 | |
| β-strand | 292-298 | 7 | 17 |
| β-strand | 301-304 | 4 | 17 |
| β-strand | 311 | 1 | 18 |
| β-strand | 317-322 | 6 | 17 |
| α-helix | 324-333 | 10 | |
Chain F: 13 helices, 14 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 117-121 | 5 | 19 |
| α-helix | 125-133 | 9 | |
| β-strand | 138-143 | 6 | 19 |
| α-helix | 146-148 | 3 | |
| α-helix | 149-154 | 6 | |
| β-strand | 158-161 | 4 | 19 |
| α-helix | 167-172 | 6 | |
| β-strand | 180-183 | 4 | 19 |
| α-helix | 188-201 | 14 | |
| β-strand | 207-210 | 4 | 19 |
| α-helix | 214-216 | 3 | |
| α-helix | 217-223 | 7 | |
| β-strand | 227-229 | 3 | 19 |
| α-helix | 231-240 | 10 | |
| α-helix | 247-255 | 9 | |
| β-strand | 263-268 | 6 | 20 |
| β-strand | 273 | 1 | 21 |
| β-strand | 279 | 1 | 22 |
| α-helix | 280-283 | 4 | |
| α-helix | 285-289 | 5 | |
| β-strand | 292-298 | 7 | 20 |
| β-strand | 301-304 | 4 | 20 |
| β-strand | 311 | 1 | 22 |
| β-strand | 317-322 | 6 | 20 |
| α-helix | 324-333 | 10 | |
| β-strand | 336 | 1 | 21 |
| α-helix | 337 | 1 | |
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| Calcium-gated potassium channel MthK | A, B, C, D, E, F | protein | 242 | Methanothermobacter thermautotrophicus | O27564 (AlphaFold model) |
Sequence of entity 1 (A, B, C, D, E, F), FASTA
>4L75_1 Calcium-gated potassium channel MthK (chains A, B, C, D, E, F)
MGLIDVAKSRHVVICGWSESTLECLRELRGSEVFVLAEDENVRKKVLRSGANFVHGDPTR
VSDLEKANVRGARAVIVNLESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGAD
QVISPFVISGRLMSRSIDDGYEAMFVQDVLAEESTRRMVEVPIPEGSKLEGVSVLDADIH
DVTGVIIIGVGRGDELIIDPPRDYSFRAGDIILGIGKPEEIERLKNYISALVPRGSHHHH
HH
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| CA | Calcium ion | Ca | 6 |
Primary citation
Structural basis of allosteric interactions among Ca(2+)-binding sites in a K(+) channel RCK domain. Smith, F.J., Pau, V.P., Cingolani, G. et al. Nat Commun (2013) 4:2621-2621. DOI 10.1038/ncomms3621 · PubMed
Other PDB entries of the same protein (UniProt O27564 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 3LDC 1.45 Å, High resolution open MthK pore structure crystallized in 100 mM K+
- 3LDD 1.45 Å, High resolution open MthK pore structure crystallized in 100 mM K+ and further soaked in…
- 6U9T 1.55 Å, Wild-type MthK pore in 50 mM K+
- 4HYO 1.65 Å, Crystal Structure of MthK Pore
- 6U9P 1.65 Å, Wild-type MthK pore in ~150 mM K+
- 2AEF 1.7 Å, Crystal Structures of the MthK RCK Domain in Ca2+ bound form
- 4HZ3 1.7 Å, MthK pore crystallized in presence of TBSb
- 3OUS 1.75 Å, MthK channel pore T59A mutant
- 3R65 1.8 Å, MthK channel pore E92Q mutant
- 6U9Y 1.8 Å, Wild-type MthK pore in 11 mM K+
- 4L74 1.84 Å, Ca2+-bound MthK RCK domain at 1.9 Angstrom with single ligand
- 6U9Z 1.95 Å, Wild-type MthK pore in 6 mM K+
Browse structure collections
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