4L75: Ca2+-bound D184N mutant MthK RCK domain

Ca2+-bound D184N mutant MthK RCK domain at 2.4 Angstrom. Determined by X-ray diffraction at 2.39 Å resolution. Released 23 Oct 2013.

Method
X-ray diffraction
Resolution
2.39 Å
Organism
Methanothermobacter thermautotrophicus
Chains
6
Atoms
10,580
Mol. weight
161.56 kDa
Ligands
CA
Released
23 Oct 2013

Explore 4L75 in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

4L75 contains 77 α-helices and 80 β-strands across 6 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 13 helices, 14 β-strands

ElementResiduesLengthSheet
α-helix113-1175
β-strand118-12141
α-helix125-1339
β-strand139-14351
α-helix146-1483
α-helix149-1546
β-strand158-16141
α-helix167-1726
β-strand180-18341
α-helix188-20114
β-strand207-21041
α-helix214-2163
α-helix217-2237
β-strand227-22931
α-helix231-24010
α-helix247-2548
β-strand263-26862
β-strand27313
β-strand27914
α-helix280-2834
α-helix285-2895
β-strand292-29872
β-strand301-30442
β-strand31114
β-strand317-32262
α-helix324-33310
β-strand33613
Chain B: 14 helices, 14 β-strands
ElementResiduesLengthSheet
β-strand118-12145
α-helix125-1339
β-strand139-14355
α-helix146-1483
α-helix149-1546
β-strand158-16145
α-helix167-1726
α-helix175-1773
β-strand180-18345
α-helix188-20114
β-strand206-21055
α-helix214-2163
α-helix217-2237
β-strand227-22935
α-helix231-24010
α-helix247-2559
β-strand263-26866
β-strand27317
β-strand27918
α-helix280-2834
α-helix285-2895
β-strand292-29876
β-strand301-30446
β-strand31118
β-strand317-32266
α-helix324-33411
β-strand33617
α-helix3371
Chain C: 12 helices, 12 β-strands
ElementResiduesLengthSheet
β-strand117-12159
α-helix125-1339
β-strand138-14369
α-helix146-1483
α-helix149-1546
β-strand158-16149
α-helix167-1726
β-strand180-18349
α-helix188-20114
β-strand207-21049
α-helix214-2163
α-helix217-2237
β-strand227-22939
α-helix231-24010
α-helix247-2559
β-strand263-268610
β-strand279111
α-helix280-2834
α-helix285-2895
β-strand292-298710
β-strand301-304410
β-strand311111
β-strand317-322610
α-helix324-33310
Chain D: 13 helices, 14 β-strands
ElementResiduesLengthSheet
β-strand118-121412
α-helix125-1339
β-strand139-143512
α-helix146-1483
α-helix149-1546
β-strand158-161412
α-helix167-1726
β-strand180-183412
α-helix188-19912
β-strand207-210412
α-helix214-2163
α-helix217-2237
β-strand227-229312
α-helix231-24010
α-helix247-2559
β-strand263-268613
β-strand273114
β-strand279115
α-helix280-2834
α-helix285-2895
β-strand292-298713
β-strand301-304413
β-strand311115
β-strand317-322613
α-helix324-33310
β-strand336114
α-helix3371
Chain E: 12 helices, 12 β-strands
ElementResiduesLengthSheet
β-strand118-121416
α-helix125-1339
β-strand139-143516
α-helix146-1483
α-helix149-1546
β-strand158-161416
α-helix167-1726
β-strand180-183416
α-helix188-19912
β-strand207-210416
α-helix214-2163
α-helix217-2237
β-strand227-229316
α-helix231-24111
α-helix247-2559
β-strand263-268617
β-strand279118
α-helix280-2834
α-helix285-2895
β-strand292-298717
β-strand301-304417
β-strand311118
β-strand317-322617
α-helix324-33310
Chain F: 13 helices, 14 β-strands
ElementResiduesLengthSheet
β-strand117-121519
α-helix125-1339
β-strand138-143619
α-helix146-1483
α-helix149-1546
β-strand158-161419
α-helix167-1726
β-strand180-183419
α-helix188-20114
β-strand207-210419
α-helix214-2163
α-helix217-2237
β-strand227-229319
α-helix231-24010
α-helix247-2559
β-strand263-268620
β-strand273121
β-strand279122
α-helix280-2834
α-helix285-2895
β-strand292-298720
β-strand301-304420
β-strand311122
β-strand317-322620
α-helix324-33310
β-strand336121
α-helix3371

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
Calcium-gated potassium channel MthKA, B, C, D, E, Fprotein242Methanothermobacter thermautotrophicusO27564 (AlphaFold model)
Sequence of entity 1 (A, B, C, D, E, F), FASTA
>4L75_1 Calcium-gated potassium channel MthK (chains A, B, C, D, E, F)
MGLIDVAKSRHVVICGWSESTLECLRELRGSEVFVLAEDENVRKKVLRSGANFVHGDPTR
VSDLEKANVRGARAVIVNLESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGAD
QVISPFVISGRLMSRSIDDGYEAMFVQDVLAEESTRRMVEVPIPEGSKLEGVSVLDADIH
DVTGVIIIGVGRGDELIIDPPRDYSFRAGDIILGIGKPEEIERLKNYISALVPRGSHHHH
HH

Ligands and cofactors

IDNameFormulaCopies
CACalcium ionCa6

Primary citation

Structural basis of allosteric interactions among Ca(2+)-binding sites in a K(+) channel RCK domain. Smith, F.J., Pau, V.P., Cingolani, G. et al. Nat Commun (2013) 4:2621-2621. DOI 10.1038/ncomms3621 · PubMed

Other PDB entries of the same protein (UniProt O27564 (AlphaFold model), which also has an AlphaFold model), best resolution first:

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