5FRR: Sister chromatid cohesion protein PDS5

Structure of the Pds5-Scc1 complex and implications for cohesin function. Determined by X-ray diffraction at 5.8 Å resolution. Released 2 Mar 2016.

Method
X-ray diffraction
Resolution
5.8 Å
Organism
SACCHAROMYCES CEREVISIAE
Chains
2
Atoms
10,858
Mol. weight
161.48 kDa
Released
2 Mar 2016

Explore 5FRR in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

5FRR contains 91 α-helices and 0 β-strands across 2 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 46 helices, 0 β-strands

ElementResiduesLengthSheet
α-helix25-4117
α-helix50-523
α-helix53-564
α-helix62-654
α-helix70-8718
α-helix95-11319
α-helix120-13213
α-helix137-1393
α-helix145-15612
α-helix168-17912
α-helix187-1948
α-helix196-1994
α-helix215-22511
α-helix228-24821
α-helix255-27218
α-helix277-2793
α-helix281-2888
α-helix293-30614
α-helix315-3184
α-helix320-3267
α-helix327-3315
α-helix335-3428
α-helix345-3517
α-helix358-3669
α-helix372-3798
α-helix381-3844
α-helix387-3926
α-helix397-4059
α-helix406-4083
α-helix412-42817
α-helix440-4467
α-helix449-4557
α-helix462-47211
α-helix484-49411
α-helix499-51012
α-helix512-52615
α-helix527-5293
α-helix540-5478
α-helix561-5644
α-helix567-5748
α-helix577-5848
α-helix593-60614
α-helix627-63711
α-helix648-6536
α-helix662-67514
α-helix683-6908
Chain B: 45 helices, 0 β-strands
ElementResiduesLengthSheet
α-helix25-3915
α-helix50-523
α-helix53-564
α-helix62-654
α-helix70-8617
α-helix95-11319
α-helix120-13213
α-helix137-1393
α-helix145-15612
α-helix165-1673
α-helix168-17912
α-helix187-1948
α-helix196-1994
α-helix215-22511
α-helix228-24720
α-helix255-27218
α-helix277-28812
α-helix293-30614
α-helix315-3184
α-helix320-3278
α-helix328-3314
α-helix335-3428
α-helix345-3517
α-helix358-3669
α-helix372-3798
α-helix381-3844
α-helix387-3937
α-helix397-4059
α-helix406-4083
α-helix412-42817
α-helix440-4467
α-helix449-4546
α-helix457-4593
α-helix462-47110
α-helix472-4765
α-helix483-49412
α-helix499-52628
α-helix544-55411
α-helix561-57212
α-helix579-5857
α-helix593-60816
α-helix630-64011
α-helix649-6535
α-helix662-67817
α-helix686-69510

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
Sister chromatid cohesion protein PDS5A, Bprotein703SACCHAROMYCES CEREVISIAEQ04264 (AlphaFold model)
Sequence of entity 1 (A, B), FASTA
>5FRR_1 SISTER CHROMATID COHESION PROTEIN PDS5 (chains A, B)
GAMAKGAVTKLKFNSPIISTSDQLISTNELLDRLKALHEELASLDQDNTDLTGLDKYRDA
LVSRKLLKHKDVGIRAFTACCLSDILRLYAPDAPYTDAQLTDIFKLVLSQFEQLGDQENG
YHIQQTYLITKLLEYRSIVLLADLPSSNNLLIELFHIFYDPNKSFPARLFNVIGGILGEV
ISEFDSVPLEVLRLIFNKFLTYNPNEIPEGLNVTSDCGYEVSLILCDTYSNRMSRHLTKY
YSEIIHEATNDDNNSRLLTVVVKLHKLVLRLWETVPELINAVIGFIYHELSSENELFRKE
ATKLIGQILTSYSDLNFVSTHSDTFKAWISKIADISPDVRVEWTESIPQIIATREDISKE
LNQALAKTFIDSDPRVRRTSVMIFNKVPVTEIWKNITNKAIYTSLLHLAREKHKEVRELC
INTMAKFYSNSLNEIERTYQNKEIWEIIDTIPSTLYNLYYINDLNINEQVDSVIFEYLLP
FEPDNDKRVHRLLTVLSHFDKKAFTSFFAFNARQIKISFAISKYIDFSKFLNNQESMSSS
QGPIVMNKYNQTLQWLASGLSDSTKAIDALETIKQFNDERIFYLLNACVTNDIPFLTFKN
CYNELVSKLQTPGLFKKYNISTGASIMPRDIAKVIQILLFRASPIIYNVSNISVLLNLSN
NSDAKQLDLKRRILDDISKVNPTLFKDQIRTLKTIIKDLDDPD

Primary citation

Structure of the Pds5-Scc1 Complex and Implications for Cohesin Function. Muir, K.W., Kschonsak, M., Li, Y. et al. Cell Rep (2016) 14:2116. DOI 10.1016/J.CELREP.2016.01.078 · PubMed

Other PDB entries of the same protein (UniProt Q04264 (AlphaFold model), which also has an AlphaFold model), best resolution first:

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