5OQL: 90S pre-ribosome from Chaetomium thermophilum
Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum. Determined by electron microscopy at 3.2 Å resolution. Released 11 Oct 2017.
- Method
- Electron microscopy
- Resolution
- 3.2 Å
- Organism
- Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
- Chains
- 55
- Atoms
- 135,120
- Mol. weight
- 3735.33 kDa
- Ligands
- ZN
- Released
- 11 Oct 2017
Explore 5OQL in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
5OQL contains 499 α-helices and 703 β-strands across 53 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain 0: 5 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 160-166 | 7 | |
| α-helix | 168-174 | 7 | |
| α-helix | 181-186 | 6 | |
| α-helix | 198-212 | 15 | |
| α-helix | 228-246 | 19 | |
Chain a: 11 helices, 3 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 3-5 | 3 | |
| α-helix | 7-11 | 5 | |
| α-helix | 25-27 | 3 | |
| α-helix | 28-35 | 8 | |
| α-helix | 41-61 | 21 | |
| α-helix | 69-85 | 17 | |
| α-helix | 95-100 | 6 | |
| α-helix | 103-109 | 7 | |
| α-helix | 111-117 | 7 | |
| α-helix | 124-133 | 10 | |
| β-strand | 136-138 | 3 | 16 |
| β-strand | 141 | 1 | 16 |
| β-strand | 158-160 | 3 | 16 |
| α-helix | 165-173 | 9 | |
Chain A: 13 helices, 59 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 5-11 | 7 | 1 |
| β-strand | 21-22 | 2 | 2 |
| β-strand | 28-32 | 5 | 2 |
| β-strand | 37-41 | 5 | 2 |
| β-strand | 46-49 | 4 | 2 |
| β-strand | 58-63 | 6 | 3 |
| β-strand | 69-74 | 6 | 3 |
| β-strand | 78-83 | 6 | 3 |
| β-strand | 88-94 | 7 | 3 |
| α-helix | 98-99 | 2 | |
| β-strand | 101-104 | 4 | 4 |
| β-strand | 110-114 | 5 | 4 |
| β-strand | 119-123 | 5 | 4 |
| α-helix | 124-126 | 3 | |
| β-strand | 143-147 | 5 | 4 |
| β-strand | 154-159 | 6 | 5 |
| β-strand | 166-170 | 5 | 5 |
| β-strand | 175-178 | 4 | 5 |
| β-strand | 189-191 | 3 | 5 |
| β-strand | 200 | 1 | 6 |
| β-strand | 203 | 1 | 6 |
| β-strand | 210-213 | 4 | 6 |
| β-strand | 219-222 | 4 | 6 |
| β-strand | 245-249 | 5 | 6 |
| β-strand | 260-264 | 5 | 7 |
| β-strand | 269-273 | 5 | 7 |
| β-strand | 278-283 | 6 | 7 |
| β-strand | 288-294 | 7 | 7 |
| β-strand | 302-305 | 4 | 8 |
| β-strand | 311-315 | 5 | 8 |
| β-strand | 322-326 | 5 | 8 |
| β-strand | 331-336 | 6 | 8 |
| β-strand | 343-348 | 6 | 9 |
| β-strand | 354-359 | 6 | 9 |
| β-strand | 364-368 | 5 | 9 |
| β-strand | 374-378 | 5 | 9 |
| β-strand | 385-390 | 6 | 10 |
| β-strand | 396-401 | 6 | 10 |
| β-strand | 405-410 | 6 | 10 |
| β-strand | 415-421 | 7 | 10 |
| β-strand | 428-433 | 6 | 11 |
| β-strand | 439-444 | 6 | 11 |
| β-strand | 450-454 | 5 | 11 |
| β-strand | 460-464 | 5 | 11 |
| β-strand | 471-476 | 6 | 12 |
| β-strand | 483-487 | 5 | 12 |
| β-strand | 491-496 | 6 | 12 |
| β-strand | 503-508 | 6 | 12 |
| β-strand | 513-518 | 6 | 13 |
| β-strand | 524-529 | 6 | 13 |
| β-strand | 533-538 | 6 | 13 |
| β-strand | 543-549 | 7 | 13 |
| β-strand | 575-580 | 6 | 14 |
| β-strand | 586-591 | 6 | 14 |
| β-strand | 595-600 | 6 | 14 |
| β-strand | 606-611 | 6 | 14 |
| β-strand | 630-631 | 2 | 15 |
| β-strand | 634-635 | 2 | 15 |
| α-helix | 648-651 | 4 | |
| α-helix | 655-656 | 2 | |
| β-strand | 675-680 | 6 | 1 |
| β-strand | 686-691 | 6 | 1 |
| β-strand | 695-700 | 6 | 1 |
| α-helix | 717-725 | 9 | |
| α-helix | 730-740 | 11 | |
| α-helix | 743-750 | 8 | |
| α-helix | 758-763 | 6 | |
| α-helix | 770-783 | 14 | |
| α-helix | 787-800 | 14 | |
| α-helix | 802-808 | 7 | |
| α-helix | 815-822 | 8 | |
| α-helix | 831-846 | 16 | |
Chain b: 10 helices, 12 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 2-21 | 20 | |
| α-helix | 23-37 | 15 | |
| α-helix | 44-48 | 5 | |
| α-helix | 50-58 | 9 | |
| α-helix | 61-68 | 8 | |
| α-helix | 72-74 | 3 | |
| β-strand | 88-90 | 3 | 17 |
| α-helix | 98-108 | 11 | |
| β-strand | 114-116 | 3 | 17 |
| α-helix | 124-133 | 10 | |
| β-strand | 138-144 | 7 | 17 |
| β-strand | 149-155 | 7 | 17 |
| β-strand | 162-171 | 10 | 17 |
| β-strand | 190-194 | 5 | 17 |
| α-helix | 199-209 | 11 | |
| β-strand | 215 | 1 | 18 |
| β-strand | 226-232 | 7 | 17 |
| β-strand | 237-245 | 9 | 17 |
| β-strand | 253-256 | 4 | 17 |
| β-strand | 260-269 | 10 | 17 |
| α-helix | 279 | 1 | |
| β-strand | 280-283 | 4 | 17 |
Chain B: 1 helix, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 838-902 | 65 | |
Chain c: 7 helices, 5 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 477-495 | 19 | |
| β-strand | 506 | 1 | 198 |
| β-strand | 525 | 1 | 199 |
| α-helix | 531-533 | 3 | |
| α-helix | 535-550 | 16 | |
| α-helix | 556-557 | 2 | |
| β-strand | 558 | 1 | 18 |
| α-helix | 609-633 | 25 | |
| α-helix | 679-682 | 4 | |
| β-strand | 694-696 | 3 | 22 |
| β-strand | 702-704 | 3 | 22 |
| α-helix | 710-726 | 17 | |
Chain C: 4 helices, 3 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 581-584 | 4 | |
| α-helix | 590-592 | 3 | |
| α-helix | 595-598 | 4 | |
| α-helix | 600-618 | 19 | |
| β-strand | 634 | 1 | 19 |
| β-strand | 642-643 | 2 | 20 |
| β-strand | 646-647 | 2 | 21 |
Chain d: 6 helices, 32 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 4 | 1 | 45 |
| α-helix | 10-12 | 3 | |
| β-strand | 16 | 1 | 33 |
| β-strand | 18 | 1 | 33 |
| α-helix | 35-52 | 18 | |
| β-strand | 57-60 | 4 | 34 |
| β-strand | 71-74 | 4 | 35 |
| β-strand | 81-85 | 5 | 35 |
| β-strand | 90-95 | 6 | 35 |
| β-strand | 104-107 | 4 | 35 |
| β-strand | 115-118 | 4 | 36 |
| β-strand | 124-128 | 5 | 36 |
| β-strand | 131-135 | 5 | 36 |
| β-strand | 148-150 | 3 | 36 |
| β-strand | 158-161 | 4 | 37 |
| β-strand | 167-171 | 5 | 37 |
| β-strand | 176-181 | 6 | 37 |
| α-helix | 188 | 1 | |
| β-strand | 189-192 | 4 | 37 |
| β-strand | 202-205 | 4 | 38 |
| β-strand | 212-217 | 6 | 38 |
| β-strand | 221-226 | 6 | 38 |
| β-strand | 232-237 | 6 | 38 |
| β-strand | 242-247 | 6 | 39 |
| β-strand | 255-259 | 5 | 39 |
| β-strand | 264-267 | 4 | 39 |
| β-strand | 275-279 | 5 | 39 |
| β-strand | 286-291 | 6 | 40 |
| β-strand | 298-302 | 5 | 40 |
| β-strand | 307-310 | 4 | 40 |
| β-strand | 319-321 | 3 | 40 |
| β-strand | 331-334 | 4 | 34 |
| β-strand | 340-344 | 5 | 34 |
| β-strand | 350-354 | 5 | 34 |
| α-helix | 366-382 | 17 | |
| α-helix | 386-393 | 8 | |
| α-helix | 399-424 | 26 | |
| β-strand | 443-445 | 3 | 38 |
43 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| Periodic tryptophan protein 2-like protein | A | protein | 904 | Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) | G0SF93 (AlphaFold model) |
| Utp2 | B | protein | 907 | Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) | G0SDW0 (AlphaFold model) |
| Utp3 | C | protein | 648 | Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) | G0S4H3 (AlphaFold model) |
| Utp4 | D | protein | 884 | Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) | G0SCT7 (AlphaFold model) |
| Utp6 | E | protein | 414 | Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) | G0S387 |
| Utp7 | F | protein | 558 | Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) | G0RZ99 |
| Utp10 | G | protein | 1802 | Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) | G0S5L1 |
| U3 small nucleolar RNA-associated protein 11 | H | protein | 270 | Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) | G0SF32 |
| Utp12 | I | protein | 962 | Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) | G0RZL9 |
| Utp13 | J | protein | 912 | Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) | G0SG95 |
| Utp14 | K | protein | 938 | Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) | G0S8Y4 |
| Utp15 | L | protein | 557 | Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) | G0SEI5 |
39 more molecules are not listed.
Sequence of entity 1 (A), FASTA
>5OQL_1 Periodic tryptophan protein 2-like protein (chains A)
MKTNFKFSNLLGTVYCRGNLLFSPDGTHLFSPVGNRVTVFNLVENKSYTFPFAHRKNISR
IGLTPQGNLLLSIDEDGQAILTNVPRRVVLYHFSFKSPVTALAFSPSGRHFVVGLKRKIE
VWHVPSTPDTNEDGDLEFAPFVRHHTHMQHFDDVRHLEWSSDSRFFLSASKDLTARIWSL
DTEEGFVPTVLSGHRQGVVGAYFSKDQETIYTVSKDGAVFEWKYVAKPGHEDDEMVDDED
MQWRIVNKHFFMQNAATLRCAAYHAESNLLVAGFSNGIFGLYEMPDFNLIHTLSISQNEI
DFVTINKSGEWLAFGASKLGQLLVWEWQSESYILKQQGHFDAMNSLVYSPDGQRIVTAAD
DGKIKVWDVESGFCIVTFTEHTSGVTACEFAKKGSVLFTASLDGSVRAWDLIRYRNFRTF
TAPERLSFTCMAVDPSGEVIAAGSIDSFDIHIWSVQTGQLLDRLSGHEGPVSSLAFAPDG
SVLVSGSWDRTARIWSIFSRTQTSEPLQLQSDVLDVAFRPDSKQIAISTLDGQLTFWSVS
EAQQVSGVDGRRDVSGGRRITDRRTAANVAGTKNFNTIRYSMDGTCLLAGGNSKYICLYS
TTTMVLLKKFTVSVNLSLSGTQEFLNSKLMTEAGPVGLLDDQGEASDLEDRIDRSLPGSK
RGDPGARKKFPEVRVSGVAFSPTGNSFCAASTEGLLVYSLDNTVQFDPFDLNMEITPAST
LAVLEKEKDYLKALVMAFRLNEAGLITRVYQAIPYTDIGLVVEQFPTVYVPRLLRFVAAQ
TEQSPHMEFCLLWIRALIDKHGPWLAANRGKVDVELRVVARAVAKMRDEIRRLADENVYM
VDYLLNQAKSKSNNRAVVGDAEEEWGGLDDFGVKALPSSKPETTLDDIMQDDVAESEEEW
IGLE
Sequence of entity 2 (B), FASTA
>5OQL_2 Utp2 (chains B)
MAGSQLKRLKASLREQGLIGPQKSKKQKRQNANDPKAQEKRLQKAEALKSIREQFNPFQF
KTNARGPKFEVTTNKPTDKNGMVIKGRPELSRARSEEKRRQTILVEMQRRNKVGGIIDRR
FGEGDPNLSVEDKMIERYTQEALRAHKKKGMFDLEDDDEARLTHMGKPLFDDDEAPKEDF
SEDDLPSGDESDTTRAERRALKRQRLAEAMEGLEDEAGQPERKKTRKEIYEEIIAKSKMY
KAERQAIKEENNELRMEVDQELPEVQQLLYQIKKPETEKKEAPVPIIAGKEKTVVDKEYD
IRLKQLAMDKRAQPAEPVKTEEEKAAEAAKKLQELEEKRLKRMRGEPVSDDEESESEEDK
GKKDKKDNAVDPLNAEESEDEFGLGKGVKYKPTATELGLDDEDDFLIDDDLVASGSELEF
DSEDFSDVESDEEEGSSESKEDEEDDEFIKGILTEAEQQEAVFQQPKQGDDENGIPYTFP
CPQSHEEMLNVVKGIEVTKLPTVVQRIRALHHPKLDAKNKERLGNFSQVLIHHIAYLGDR
FQPHWFPTLEQLSRHVHSLAKTFPIEVAKAYRMRIQEMEEHRPLAPTVGDLVILTAIGTT
FPTSDHFHQVCTPAMLAIARYLGQKVPAALSDFAVGIYLSILALQYQDFAKRYVPEMMNF
LLNTLCALAPERAKSKLGNFPVHEPPAGIRIKDATNTPIRQLNCGDCLRKDELSPAETSS
LQIAILSTATAILKSAADTWHKLPAFIESFQPALSVAQHLLTKPNASHLPSSLTSKLNDL
ASHLSRLLQLSRLSRRPLELHHHRPLAIKTYIPKFEDDFDPDKHYDPNRERAELAKLKAE
HKRERKGALRELRKDAQFIRREQLRIKKEKDEAYEKKFKRIIAEIQNEEGRAANEYAREK
AARKRKR
Sequence of entity 3 (C), FASTA
>5OQL_3 Utp3 (chains C)
MAKKRKATRPAEPQGPKEIDPKDARLTVNNYMDVADSEDEYWYKKDRLDIDSDDEPRSKR
LKRQDKEDAFLEQSDEEIFDDELSSEEEEEDDEDERRAPTKKDGKKGAALDDDDDAELLG
LGKKKDDDEIRDEGWWGSSKKEYYNADAIETEQDALEEEKEARRLQAKKLAKMQEADFAF
DEAEWLATKDEKTGGDEEVVTEVLKEVEVTSDMGPEERYNLLQARYPEFDYLVEEFRELR
PLLETLQKEAEGKPAKSLPVVKAWVLGCYVAALASYFAILTSPTRDGDESKGIMNPSELR
DHEVMQTLMECREAWLKVKSLRPAKGAVSAHGMLSPPEEGEEAGSDVDMLDDHAVQKPKK
AKKLSKEEIKANKKKKEEEAKKAKAVEQSLAELTSLLQTTKKAAVKASVASKAMSTAATS
GADSGMDDNRSDFGEEEELDARTAAEKAKRKKSLRFYTSQIVQKANKRQGAGRDAGGDMD
IPYRERLKDRQARLNAEAERRGKRDSKFGADLGGDSSDDEDAKARQVRDDEDAYYNEVVQ
AAAKKRADKQARFEALAAARKGDRVVEEETIGPDGKRQITWQIQKNKGLTPNRKKEQRNP
RVKKRKKYEEKQKKLRSVKAVYKGGEGPGGYQGELSGIKTNLVKSVKL
Sequence of entity 4 (D), FASTA
>5OQL_4 Utp4 (chains D)
MDIHRCRFVRYPASAINAVAFTHSALPVVSSSKKYLQKNIQVRLAIGRANGDIEIWNPLN
GGWYQEVIIPGGKDRSVDGLVWVTDPDEEMADGKIIHGKSRLFSIGYTTTITEWDLEKAR
AKKHASGQHGEIWCFGVQPLPHKANAAAAQNRKLVAGTVDGNLVLYSIEDGDLKFQKTLT
RTPSKKTKFVSIAFQSHNIVIVGCSNSTICAYDVRTGTMLRQMTLGTDLTGGSKNIIVWA
VKCLPNGDIVSGDSTGQVCIWDGKTYTQAQRIQSHTQDVLCLSVSADGSKIISGGMDRRT
AVYEPMAGQSGRWSKVFHRRYHQHDVKAMASFEGKGMSVVVSGGSDASPIVLPLRALGKE
FHRTLPHLPQHPTVLSAPKARYILSWWENEIRIWHLLNSAQQFLDDPQAPLNLRKNRKFL
AQVLIKGASHITSASISEDGTLLAASTPTDVKVFHLDPAAAQRNGQLYIKKVNMTGTGLG
ATRVQISPDKRWICWAEEGSKVMISRVHATESADGISYTVSVPHKLHRLRRQIPKHILLG
GLGSYDRNVSQIAFSADSRMLSVADLAGYIDTWVLRGPGEGVNGTGGEDSDGESAASSSD
SSDEKSEDIAGERWARNPKAAMIPKLSAAPVVLSFSPTPRDDGDYDLLVVTTLKQLLIFN
PLRGMLSEWSRRNTYPKLPEPFRDTRDQVKGIVWQGQRAWFYGVASLFMFDLSQDFSPEK
DLVETNGHKQGTKRKRGAHESGAGSKIEKHSLVPQRIRAASAPDGTKWEDIEMVDADDQK
SVGVSSGVDDDDDETDGSELQRLREENREANSSANAEKEGPSRAKWWHTYQFRPIMGIVP
IEGMMEKKLGAVEGIPPLEVALIERPLSEDDLPERYFAEGEWER
Sequence of entity 5 (E), FASTA
>5OQL_5 Utp6 (chains E)
MAWVADKARFYLERAAPELREWEEKEIFTKDEIRNLVAKRSDFEHLVLAPGTKPTDFLNY
VNWERSLDRLRAKRCARLNIRSVTSHASQARTFGIFERAVLKHPGSIELWLAYLEFAAQV
KATKRWRRIMTRALRLHPMNASLWTLAGRRAAQNGDMQRARAHFLRGCRFCTREPTLWLE
YARCEMDWLARMEAKKQGQGVRKGVNALEAIKATEGQEEGDIIPIGEDTEDDSGDEDGLI
LPDPDAEGTDGTKKAAKPVFDAEQTKKLEQSPALSGAIPIAVFDVARKQPFWGPAAAEKF
FDVFAKFGHLSCHERIISHVVTTMQELFPNHPCTWSVHIRQPLVGVDVLTPAFPKALRES
LARLKAALQSTTDRKALATKMVAWMDGILAIEKLDAAIRTVLEHTKRSLEESPS
Sequence of entity 6 (F), FASTA
>5OQL_6 Utp7 (chains F)
MDTSEAVDLAPAPAKQGRQANGAHSIANARTEFRSKAELDRIRRYKQAQKKYGRGPRVDI
KSVRDKKLRRTLTNLENKYKTAALKAKEAEILLENQTGFLEPEGELERTYKVRQDEIVKE
VAVEVAQKKFELKLTELGPYTCEYSRNGRDLILAGRKGHVATMDWREGKLGCELQLGETV
RDARFLHNNQFFAVAQKKYVYIYDHNGVEIHCLRKHVEVSHMEFLPYHFLLATLSISGQL
KYQDTSTGQIVAEIATKHGTPVSLTQNPYNAILHIGQQNGTVTLWSPNSTDPLVKLLAHR
GPVRSLAVDREGRYMVSTGQDNKMCIWDIRNFKEAVNSYFTRAPATSVAISDTGLTAVGW
GTHTTIWKGLFNKERPVQVKVDSPYMTWGGQGQVVERVRWCPFEDILGIGHNEGFSSIIV
PGAGEANYDALEVNPFETKKQRQEGEVKALLNKLQPEMIALDPNFIGNLDLRSEKQRQAE
RDLDQPAQDIVEELRKKARGRNTALKKYLRKQRKKNIIDEKRLKAEELYRQMQEKRDGQT
KEKQAEVGPALARFVRKE
Sequence of entity 7 (G), FASTA
>5OQL_7 Utp10 (chains G)
MASSLAQQLAQIAANSRSSFNVKALKASHSKSLIWEPRVAVSQTFAEIYSQCYEGFKELC
HLDSRFVPFDATLFSAQSQEVDRTQMTAEENAALDKRVDSFLHLVGSRLRLMPAIKAVEW
LIRRFRIHEFNTGTLLATFLPYHTIPAFVTLLSILPVQRIPIEYRFLDPYIKSLTPPPRA
AIVQQATNRPDLLSAISRYTLDSCRAKQEYPGLISFWGGIMAEAVNGMIDKMRSGRRAIQ
LENDHLLLQQIGPVLSEAMVMKDVPGIQIASYMVVAILAAKGSLNDNILTAFMEQLVHGW
TVDTLRPGLVCLTMLAQHRSAKQLSGRVAKAVIKVPDLVSSLRDISKEHQVDKLANGLVL
AFVDRLAKKGDIRTLPVINSLLLSELLQEKQAKVAYKALLLAAHKIDDNVDADGNIRKQV
GSALVRLSQAEGDVGDAIRTAIQEVDFNIEELELKLGAAIRPKLAIEEAPEPSDEAMTVR
PVDQRPSLDSTFERLSKLQPTATSCLAKDSESLFNDLCSVFLSAAVSESDLERFDATPVL
SRPKAPSNSFYLSFYLRVWCGPYPTLAKVAALERVKTRLKEGDCVDKDFQAIFPYCIAAL
SDPAKKVRRAAADLVAVLGSAYKSLEKSQQLWAAKDLYGKTGTTSPLDKDALKALIRSVL
IPCLEESVLHEDHVVAALVGALESSKDSENKNADKRHLSHSARLSIFKFLCGHVVETPLL
AVKLRLLRSLNQIRRISGTTRTDLLLPLLRWWAGLSANEAAELAAQESVDVPAIDDAVVD
VVVPNHAAGLEAFFQLVKEAIRPGLLQAIFARIAKMWPSMKSDTKYSTAKTLFELTQDPK
LNAEQSDVITEAVEVLRKVDLTTDILHYFIDSLQDEVRLATEGPANKRRRVSTTEPGRGV
GTQSSPELQAALSKTTFVLELVQESTPANHPELLPSLFTTLSDLHHLSAIVGSELGYLQN
LVLSSLLAMMPTYKDNKDLTIDASVGHGDVLATCIQKSTSPAVINSALLLVASLARTAPD
VVLQSVMPIFTFMGSSVLKQADDYSAHVVNQTIKEVIPPLIETFRKRGRNVVASAKDLLA
SFVTAYEHIPSHRKHNLFISLIQNLGPDDFLFAILAMFVDRYGATDNMITFMTQLISSFT
VETQLQTLLKFLDLVGDLFKSKPTLSNVLLGGGSGLNGEQDIQKAATKQLNLLPHLLSNR
RLKREIMQLAERDDMEAGKIRELYAALLEGILTVASTVKTKKTLHSRCGDALSNLLNLLS
IAEFIKSVEALLDRPNIGLRQKVLRALELRVDSESSVDPKSREALLAFLPQLTAVIRESD
DMNYKHTAVICVDKISEKYGKKDLDAVAAAATTIAGDYCLGQPSQSLRVMALLCLASLVD
VLQDGIVPVLPVAIPKALSYLEQSVAEGGRDVELHNAAYAFMTALAQHIPYMITGNYLDR
LLACSNASAAANLDDEANANRMQCLQFLAKLVDARVLYTGLHQNWASAAKFGFSAISEYL
QILGIALDKHSKTVVVKNVSSLSSIFLSAMDLRRTVAAGDIASQISAMELDEIETKTHED
ALKMVYKLNDAAFRPIFSKFVEWATTGLPKSDVTGRTYRLYVVFGFLDAFFGSLKSIVTG
YASYIVDASVKALKAVDFAVPEERNLWKRVLCTLAKCFEHDQDGFWQAPAHFGAVAPVLV
EQFLRAEGQVTATNVNDVIQDVVPAVVELAAAVESQEHYKEINTALLKHLRNGSPGVRLA
VVKCQQAITAKLGEDWLHLLPEMLPYISELQDDDDEVVERENRRWIVGIEEKLGESLDSM
LQ
Sequence of entity 8 (H), FASTA
>5OQL_8 U3 small nucleolar RNA-associated protein 11 (chains H)
MSSLRHAIQRRAHKERAQPLERQRLGILEKKKDYRLRARDYKKKQAVLKSLRQKAAERNE
DEFYFGMMSRKGPGSALTRGKGFTGTVDGDRGNKALSVETVRLLKTQDLGYVRTMRNIAA
KELKELEERYVLAGGADQPVEEFNSDEDEEESGSKQAKPKKIVFFEGVEERQQALEKQKA
DEEMKDYDEEEDGYDFDDEEEMTEKEKEERRKQLVLEKLARKVKAARKKLKALADAEYEL
ELQQAKMAKTATSGGFTKSGRRIKVRERKR
Sequence of entity 9 (I), FASTA
>5OQL_9 Utp12 (chains I)
MVKSYLKFEPSKSFGVVVSSNSNLVWSSRGKAGAGAGQAIVAANEEVLVWDIKKGELLSR
WRDENCKFRVTAIAQSRTDPDVFAVGYEDGSIRLWDSKIATSVVSFNGHKSAITVLAFDK
TGVRLASGSKDTDIIVWDLVAEVGQYKLRGHKDQVTGLYFIEPDPVVRTEGEDDHAVMAV
DSEPSDGFLLTTGKDSLIKLWDLSSRHCIETHVAQANGECWALGVSPDFTGCITAGNDGE
ITVWALDADALASSAQKVDLSQSVNFLQNRGTLHRSSKERAAEVVFHPLRDYFAVHGVEK
SVEIWRIRNEAEIKKTLARKKKRRREKLKEKKAEGADADMDETDDTDIAKAEVSDVFVQH
VIVRTTGKVRSVDWALNPGVKDLQLLVGGTNNLLELYNIVGKERLKSKGEEPDYNKALAV
ELPGHRTDIRSVAISSDDKMLASAANGSLKIWNIKTQQCIRTFDCGYALCCAFLPGDKVV
IVGTKEGELQLYDVASASLLETVNAHDGHAVWALQVHPDGRSVVSGGADKTAKFWDFKIV
QEPVLGTTRTTHRLKLVQSRILKVSDDILSLRFSPDARLLAVALLDSTVKVFFNDTLKLY
LNLYGHKLPVLSMDISYDSKLIVTSSADKNIRIWGLDFGDCHKALFGHQDSILQVAFIPH
NSDGNGHYFFSASKDRTIKYWDADKFEQIQRIDGHHGEIWALAVSHSGRFLVSASHDKSI
RVWEETDEQIFLEEEREKELEELYEQTLTTSLEQDPDEQDANREIAAATKQTVETLMAGE
RIAEALELGMTDLNTIREWEEARQINPNIAPPQRNPIFVALGNIPAETYVLNTLQKIKPA
SLHDALLVLPFSTIPSLLTFLNLFAQRELNVPLTCRILFFVLKTHHKQIVASRTMRATLE
KVRANLRAALRRQKDEMGFNIAALKVVSMQLRDKSVREYVDETWEEKEKEKGVRKRAFAS
LS
Sequence of entity 10 (J), FASTA
>5OQL_10 Utp13 (chains J)
MATKQPAKTTFEVANVIQPIYTGGSVALENGARILASTLGENAILTELNTGKRLAEIQGD
GEPISTLTITPSGSHLIVCSRSLTMRIYSLAISPDYDSVEPTLVRTTKPHATPVVVLAVD
RTSTLLATGAADGAIKIWDIIGGYVTHTVSGPSVLVSALHFFEIAVTAESQSSNKKPKKG
SRKGQNDDADEIASRFRLAWGTQDGRIRIFDLYKRTTTPVYADPKRKKEAHESNVQCIAY
SPEQHALLSGSRDKTMTLWLWRDGIWQGTPMLRHELLESVGFLNEGKWMYSAGTSGVLRI
WDTTTHHEITKKQDAKSEGEAILSAVSLPERSLILCAQADFTLVLYRVPSPADVVSSSEG
ILLEPFRRISGTHDEILDLTYILPDQSMMAIATNSEDIRIVSVKDAQAYSEDNAECRSGS
YFGHDVALLKGHEDIVMSLDVDWSGHWIASGSKDNTARLWRVDPANNSYTCYAVFTGHLE
SVGAVALPKVVPPANSEAFKNPLDHPPAFLISGSQDRFVQKRDIPRQLQKGGKLTSSLRR
LAHDKDINALDISPNGKLFASASQDKTVKIWDVEKLEVQGILRGHKRGVWTVRFAPLNTP
VIQGEQGSVSGRGVVLTGSGDKTIKLWNLSDYTCIRTFEGHSHNVLKVVWLHISRDDSIT
KTKVQFASAGADTLVKVWDANTGETECTLDNHEDRLWTLAVHSKTNILASAGSDSKVTFW
RDTTAETQAAAAQAALKLVEQEQTLENYIHAGAYRDAIVLALQLNHPGRLLNLFTNVVTT
RNPDPDSLTGLKAVDDVLAKLSDEQIFQLLLRLRDWNTNARTAPVAQRVLWALFKSHPAN
KLSSLSVKGARGHKSLNEVLDAIKVYTERHYKRIEELVDESYLVEYTLREMDALTPQTEA
LEAGEDAVIAEA
Sequence of entity 11 (K), FASTA
>5OQL_11 Utp14 (chains K)
MPGRQAHGRPLLPSLGSSSGGGKSKKSRSKARRSAQSKALDAFALAAEQVPESRSKGVRL
RDLDEHPSTSASRNKRQHEDDEEDDFDGFDDDEGMGRKKRARRDSGGDEDGDDVDEDMEG
GADGEDDSEEWHVGVTGADEDSEIDSDEAFGESDEERFEGFVFGGSKSHKKGTKKRRNGS
EDDAIDLATALDQYESSEEGEEGEESESEEDDEESEEEDSDEEDDDPSKLDALQSMIAGF
AGEDEESGGEGEAKPSGKQKLSLKDLGLVGVKDPDMKRSLRLMKKEEKATKPGSSKKLEV
PLAKRQQDRLMREAAYKKTNETLDRWIETVKHNRRAEHLVFPLAQNAHDRGLDASELQPI
TQKTSGTELEQTILAIMEESGLGPTAKPEKKETSGEAGKQGMSKEEQKELIRQKRREREL
HSREMARLKRIKKIKSKTWRRIHRKELLKNEEAAYQAALEAGELDSEEEREALDRRRALE
RVGARHKESKWAKLGKKAGRAVWDEDFRAGLAEMARRKDELRKRIEGLKNGSDDSSDDSD
GDEDASGDEAAERRKLLAELEKAAAYSDDDEPHSKLFQLKFMQRGEELRRKENEELIAQI
RRELDSDYDGSEPDEVEIGRRTFGMGKKDKTEQQQAQDQLARMQAAEARKEKAAARVAAA
EETVKQEAREKAEKDEASAPSTAGAWSQPKVEAGAWSKPDDEGSSKPRKAPKGRPEEIDV
TDLALAGKPAKAKANGQAKSQVQGKAHASNGQSSSSQKASTSVAITGAEEDGNDSDDSDA
VHLPMAIRDRALIERAFAGDDVAAEFEKEKAEIEADDDEKEIDNTLPGWGSWVGEGVSNR
EKRRHQGRFVTKVEGIKKEKRKDYKLKDVIINEKRVKKNDKYLATGLPHPFESQQQYERS
LRLPVGPEWMTKETFQDATKPRVIIKQGIIAPMSKPMY
Sequence of entity 12 (L), FASTA
>5OQL_12 Utp15 (chains L)
MAAEVVPLPQLKLPSGPSPITAEQRYWRSFKKQKSHTSTANWPISHISFPASLGTTALVS
SSLVAAAKTNDLFAVTAGPRVEIFSIRKREPLKTIGRFDSEAHCGEIRPDGRVLVAGEDT
GRMQVFDVGQGTRAVILKTWHIHKQPVWVTKWSPTELTTLMSCSDDKTVRLWDLPSNDPT
RLFTGHTDYVRCGAFMPGSANSNLLVSGSYDETVRVWDARAPGGAVMTFKHADPIEDVLP
LPSGTTLLAASGNAISVLDLVAAKPLRLITNHQKTVTSLSLASQGRRVVSGSLDGHVKVF
ETTSWNVVAGAKYPSPILSLSVITAGASHDDRHLAVGMQSGVLSIRTRLSGPAADRERER
ERVEAAMAKGPEAIAKLDAAKAKRKRAAVSNKNMDLLGESADVIIPTADPGTHPRGRRPK
LKPWQKAFRQGRYAAAVDDVLNTTAPSYDPVIALTLLTALRHRSALREALQGRDELSVIN
ILRWAGKYVADPRYRSICVDVAFHLIDLYAEHVGGSAELATQFQQLLAKVNREVEKAELA
IVTGGMVESLMMSVEAQ
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| ZN | Zinc ion | Zn | 1 |
Primary citation
3.2- angstrom -resolution structure of the 90S preribosome before A1 pre-rRNA cleavage. Cheng, J., Kellner, N., Berninghausen, O. et al. Nat Struct Mol Biol (2017) 24:954-964. DOI 10.1038/nsmb.3476 · PubMed
Other PDB entries of the same protein (UniProt G0SF93 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 9XAG 2.8 Å, Cryo-EM structure of the 90S pre-ribosome (Enp1-Rrp12 Mut) from Chaetomium thermophilum,…
- 9XA8 2.9 Å, Cryo-EM structure of the 90S pre-ribosome (Enp1-Rrp12 WT) from Chaetomium thermophilum,…
- 9XAF 3.0 Å, Cryo-EM structure of the 90S pre-ribosome (Enp1-Rrp12 Mut) from Chaetomium thermophilum,…
- 9XAH 3.1 Å, Cryo-EM structure of the 90S pre-ribosome (Enp1-Rrp12 Mut) from Chaetomium thermophilum,…
- 9XA7 3.2 Å, Cryo-EM structure of the 90S pre-ribosome (Enp1-Rrp12 WT) from Chaetomium thermophilum,…
- 6RXU 3.5 Å, Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum,…
- 5ICA 3.51 Å, Structure of the CTD complex of UTP12, Utp13, Utp1 and Utp21
- 6RXV 4.0 Å, Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum,…
- 6RXZ 4.4 Å, Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum,…
- 6RXY 4.7 Å, Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum,…
- 6RXT 7.0 Å, Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum,…
- 6RXX 7.1 Å, Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum,…
Browse structure collections
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