Pekin duck lysozyme isoform I (DEL-I). Determined by X-ray diffraction at 1.2 Å resolution. Released 15 Nov 2017.
Explore 5V8G in 3D Show helices and sheets RCSB PDB PDBe
5V8G contains 7 α-helices and 9 β-strands across 1 chain. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
| Element | Residues | Length | Sheet |
|---|---|---|---|
| β-strand | 2 | 1 | 1 |
| α-helix | 5-14 | 10 | |
| β-strand | 20 | 1 | 2 |
| β-strand | 23 | 1 | 2 |
| α-helix | 25-36 | 12 | |
| β-strand | 39 | 1 | 1 |
| β-strand | 43-45 | 3 | 3 |
| β-strand | 51-53 | 3 | 3 |
| β-strand | 58-59 | 2 | 3 |
| β-strand | 65 | 1 | 4 |
| β-strand | 79 | 1 | 4 |
| α-helix | 80-84 | 5 | |
| α-helix | 89-99 | 11 | |
| α-helix | 104-107 | 4 | |
| α-helix | 109-114 | 6 | |
| α-helix | 120-124 | 5 |
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|---|---|---|---|---|
| lysozyme isoform I | A | protein | 127 | Anas platyrhynchos | P00705 (AlphaFold model) |
>5V8G_1 lysozyme isoform I (chains A) KVYSRCELAAAMKRLGLDNYRGYSLGNWVCAANYESSFNTQATNRNTDGSTDYGILQINS RWWCDDGKTPGSKNACGIPCSVLLRSDITEAVRCAKRIVSDGNGMNAWVAWRNRCRGTDV SKWIRGC
| ID | Name | Formula | Copies |
|---|---|---|---|
| SCN | Thiocyanate ion | C N S | 1 |
Water and common crystallization additives (CL) are not listed.
Structural basis of antigen recognition: crystal structure of duck egg lysozyme. Langley, D.B., Crossett, B., Schofield, P. et al. Acta Crystallogr D Struct Biol (2017) 73:910-920. DOI 10.1107/S2059798317013730 · PubMed
Other PDB entries of the same protein (UniProt P00705 (AlphaFold model), which also has an AlphaFold model), best resolution first:
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