5ZGG: P75NTR transmembrane domain

NMR structure of p75NTR transmembrane domain in complex with NSC49652. Determined by solution NMR. Released 13 Mar 2019.

Method
Solution NMR
Organism
Homo sapiens
Chains
2
Atoms
539
Mol. weight
7.66 kDa
Ligands
9F6
Released
13 Mar 2019

Explore 5ZGG in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

5ZGG contains 2 α-helices and 0 β-strands across 2 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chains A and B: 1 helix, 0 β-strands

ElementResiduesLengthSheet
α-helix252-27625

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
Tumor necrosis factor receptor superfamily member 16A, Bprotein34Homo sapiensP08138 (AlphaFold model)
Sequence of entity 1 (A, B), FASTA
>5ZGG_1 Tumor necrosis factor receptor superfamily member 16 (chains A, B)
TRGTTDNLIPVYCSILAAVVVGLVAYIAFKRWNS

Ligands and cofactors

IDNameFormulaCopies
9F6(2E)-1-(2-hydroxyphenyl)-3-(pyridin-3-yl)prop-2-en-1-oneC14 H11 N O21

Primary citation

A Small Molecule Targeting the Transmembrane Domain of Death Receptor p75NTRInduces Melanoma Cell Death and Reduces Tumor Growth. Goh, E.T.H., Lin, Z., Ahn, B.Y. et al. Cell Chem Biol (2018) 25:1485-1494.e5. DOI 10.1016/j.chembiol.2018.09.007 · PubMed

Other PDB entries of the same protein (UniProt P08138 (AlphaFold model), which also has an AlphaFold model), best resolution first:

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