6FDE: HHD2 Domain of Whirlin : 3-helix conformation

Crystal Structure of the HHD2 Domain of Whirlin : 3-helix conformation. Determined by X-ray diffraction at 1.85 Å resolution. Released 8 Aug 2018.

Method: X-ray diffraction
Resolution: 1.85 Å
Organism: Mus musculus
Chains: 1
Atoms: 560
Mol. weight: 9.68 kDa
Released: 8 Aug 2018

Explore 6FDE in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

6FDE contains 5 α-helices and 0 β-strands across 1 chain. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 5 helices, 0 β-strands

Element	Residues	Length
α-helix	432-451	20
α-helix	457-478	22
α-helix	480-483	4
α-helix	486-488	3
α-helix	489-497	9

Molecules and chains

Molecule	Chains	Type	Length	Organism	UniProt
Whirlin	A	protein	85	Mus musculus	Q80VW5 (AlphaFold model)

Sequence of entity 1 (A), FASTA

>6FDE_1 Whirlin (chains A)
GAMGSGNQTRALLDDQARHLLTEQERATMMYYLAQYRGGTISVEAMVMALFELLNTHAKF
SLLSEVRSIISPQDLDRFDHLVLRR

Primary citation

Structural plasticity of the HHD2 domain of whirlin. Delhommel, F., Cordier, F., Saul, F. et al. FEBS J (2018) 285:3738-3752. DOI 10.1111/febs.14614 · PubMed

Other PDB entries of the same protein (UniProt Q80VW5 (AlphaFold model), which also has an AlphaFold model), best resolution first:

6Y9Q 1.31 Å, Crystal structure of Whirlin PDZ3_C-ter in complex with Taperin internal PDZ binding…
6Y9O 1.63 Å, Crystal structure of Whirlin PDZ3_C-ter in complex with CASK internal PDZ binding motif…
6Y38 1.7 Å, Crystal structure of Whirlin PDZ3 in complex with Myosin 15a C-terminal PDZ binding…
6FDD 1.75 Å, Crystal Structure of the HHD2 Domain of Whirlin
6Y9N 1.93 Å, Crystal structure of Whirlin PDZ3_C-ter in complex with Myosin 15a C-terminal PDZ…
6Y9P 3.17 Å, Crystal structure of Whirlin PDZ3_C-ter in complex with Harmonin a1 C-terminal PDZ…

Browse structure collections

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