6IG9: Transcription-associated protein 1

Tra1 subunit from Saccharomyces cerevisiae SAGA complex. Determined by electron microscopy at 4.6 Å resolution. Released 15 May 2019.

Method
Electron microscopy
Resolution
4.6 Å
Organism
Saccharomyces cerevisiae
Chains
1
Atoms
17,122
Mol. weight
433.68 kDa
Released
15 May 2019

Explore 6IG9 in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

6IG9 contains 173 α-helices and 17 β-strands across 1 chain. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain T: 173 helices, 17 β-strands

ElementResiduesLengthSheet
α-helix4-129
α-helix21-3616
α-helix44-6118
α-helix72-8312
α-helix92-10514
α-helix117-13014
α-helix137-15216
α-helix153-1575
α-helix218-2214
α-helix232-2387
α-helix239-2435
α-helix249-2579
α-helix293-30917
α-helix324-33411
α-helix342-35615
α-helix359-3679
α-helix370-3723
α-helix383-40119
α-helix408-42316
α-helix429-45022
α-helix457-50246
α-helix512-5198
α-helix561-5655
α-helix579-59921
α-helix600-6023
α-helix608-6103
α-helix628-64417
α-helix677-69115
α-helix695-71319
α-helix718-72811
α-helix733-74715
α-helix749-7513
α-helix756-77015
α-helix772-7754
α-helix785-80117
α-helix805-81612
α-helix825-84521
α-helix852-8609
α-helix880-8867
α-helix894-90411
α-helix921-93111
α-helix939-94911
β-strand97811
β-strand98212
β-strand99111
α-helix997-10059
α-helix1011-103020
α-helix1040-105112
α-helix1069-109022
α-helix1096-112328
α-helix1143-11519
α-helix1158-117821
α-helix1183-11886
α-helix1190-120213
α-helix1206-122318
α-helix1228-12325
α-helix1234-124714
α-helix1254-127118
α-helix1284-129512
α-helix1301-131616
α-helix1322-133413
α-helix1336-13394
α-helix1347-135812
α-helix1372-138312
α-helix1403-142422
α-helix1436-145015
α-helix1453-146513
α-helix1476-149015
α-helix1497-150913
α-helix1517-152913
α-helix1532-15376
α-helix1547-155812
α-helix1559-15613
α-helix1567-158418
α-helix1594-16029
α-helix1605-16139
α-helix1618-162912
α-helix1635-165319
α-helix1661-167919
α-helix1690-170617
α-helix1716-173520
α-helix1741-175212
α-helix1759-176911
α-helix1777-178913
α-helix1797-181620
α-helix1822-18254
α-helix1832-184312
α-helix1859-187315
α-helix1881-189515
α-helix1899-191517
α-helix1920-193112
α-helix1939-195921
α-helix1965-197511
α-helix1981-199717
α-helix2001-201515
α-helix2023-204018
α-helix2090-210516
α-helix2116-212813
α-helix2158-217518
α-helix2183-219311
α-helix2202-221716
α-helix2231-224616
α-helix2250-226617
α-helix2275-229218
α-helix2303-232119
α-helix2329-234113
α-helix2346-236015
α-helix2370-23789
α-helix2380-23823
α-helix2388-240215
α-helix2413-242412
α-helix2429-244113
α-helix2447-24559
α-helix2469-247810
β-strand248012
α-helix2500-25023
α-helix2517-253317
α-helix2538-254811
α-helix2553-256715
α-helix2573-258816
α-helix2603-26119
α-helix2621-26277
α-helix2634-264512
α-helix2652-266817
α-helix2672-26809
α-helix2686-269611
α-helix2700-271415
α-helix2723-273917
α-helix2743-27519
α-helix2757-27637
α-helix2769-278113
α-helix2789-280517
α-helix2812-28165
α-helix2819-28246
α-helix2827-28293
α-helix2838-286528
α-helix2873-288614
α-helix2895-292329
α-helix2943-295715
α-helix2961-29699
α-helix2978-299013
α-helix2997-300812
α-helix3016-303015
α-helix3031-30333
α-helix3036-305015
α-helix3055-307016
α-helix3074-309017
α-helix3097-310913
α-helix3117-31237
α-helix3130-31334
α-helix3137-314610
α-helix3150-316213
α-helix3166-318217
α-helix3203-321715
α-helix3220-323718
α-helix3243-326220
α-helix3274-328613
α-helix3292-330110
α-helix3307-332620
β-strand3331-333333
α-helix3335-33373
α-helix3340-33434
α-helix3345-33473
α-helix33521
β-strand335314
α-helix33541
β-strand337014
β-strand3373-337425
β-strand3377-338263
β-strand3387-339043
β-strand3393-339425
β-strand3404-340633
α-helix3412-343221
α-helix3434-34385
β-strand3448-345033
β-strand3456-345833
β-strand3464-346636
α-helix3467-347711
α-helix3482-349615
α-helix3505-352016
α-helix3527-35348
α-helix3538-356225
β-strand3573-357536
β-strand3581-358226
α-helix3626-36327
α-helix3634-365320
α-helix3658-367619
α-helix3685-370319
α-helix3718-372811
α-helix3730-37356

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
Transcription-associated protein 1Tprotein3744Saccharomyces cerevisiaeP38811
Sequence of entity 1 (T), FASTA
>6IG9_1 Transcription-associated protein 1 (chains T)
MSLTEQIEQFASRFRDDDATLQSRYSTLSELYDIMELLNSPEDYHFFLQAVIPLLLNQLK
EVPISYDAHSPEQKLRNSMLDIFNRCLMNQTFQPYAMEVLEFLLSVLPKENEENGILCMK
VLTTLFKSFKSILQDKLDSFIRIIIQIYKNTPNLINQTFYEAGKAEQGDLDSPKEPQADE
LLDEFSKNDEEKDFPSKQSSTEPRFENSTSSNGLRSSMFSFKILSECPITMVTLYSSYKQ
LTSTSLPEFTPLIMNLLNIQIKQQQEAREQAESRGEHFTSISTEIINRPAYCDFILAQIK
ATSFLAYVFIRGYAPEFLQDYVNFVPDLIIRLLQDCPSELSSARKELLHATRHILSTNYK
KLFLPKLDYLFDERILIGNGFTMHETLRPLAYSTVADFIHNIRSELQLSEIEKTIKIYTG
YLLDESLALTVQIMSAKLLLNLVERILKLGKENPQEAPRAKKLLMIIIDSYMNRFKTLNR
QYDTIMKYYGRYETHKKEKAEKLKNSIQDNDKESEEFMRKVLEPSDDDHLMPQPKKEDIN
DSPDVEMTESDKVVKNDVEMFDIKNYAPILLLPTPTNDPIKDAFYLYRTLMSFLKTIIHD
LKVFNPPPNEYTVANPKLWASVSRVFSYEEVIVFKDLFHECIIGLKFFKDHNEKLSPETT
KKHFDISMPSLPVSATKDARELMDYLAFMFMQMDNATFNEIIEQELPFVYERMLEDSGLL
HVAQSFLTSEITSPNFAGILLRFLKGKLKDLGNVDFNTSNVLIRLFKLSFMSVNLFPNIN
EVVLLPHLNDLILNSLKYSTTAEEPLVYFYLIRTLFRSIGGGRFENLYRSIKPILQVLLQ
SLNQMILTARLPHERELYVELCITVPVRLSVLAPYLPFLMKPLVFALQQYPDLVSQGLRT
LELCIDNLTAEYFDPIIEPVIDDVSKALFNLLQPQPFNHAISHNVVRILGKLGGRNRQFL
KPPTDLTEKTELDIDAIADFKINGMPEDVPLSVTPGIQSALNILQSYKSDIHYRKSAYKY
LTCVLLLMTKSSAEFPTNYTELLKTAVNSIKLERIGIEKNFDLEPTVNKRDYSNQENLFL
RLLESVFYATSIKELKDDAMDLLNNLLDHFCLLQVNTTLLNKRNYNGTFNIDLKNPNFML
DSSLILDAIPFALSYYIPEVREVGVLAYKRIYEKSCLIYGEELALSHSFIPELAKQFIHL
CYDETYYNKRGGVLGIKVLIDNVKSSSVFLKKYQYNLANGLLFVLKDTQSEAPSAITDSA
EKLLIDLLSITFADVKEEDLGNKVLENTLTDIVCELSNANPKVRNACQKSLHTISNLTGI
PIVKLMDHSKQFLLSPIFAKPLRALPFTMQIGNVDAITFCLSLPNTFLTFNEELFRLLQE
SIVLADAEDESLSTNIQKTTEYSTSEQLVQLRIACIKLLAIALKNEEFATAQQGNIRIRI
LAVFFKTMLKTSPEIINTTYEALKGSLAENSKLPKELLQNGLKPLLMNLSDHQKLTVPGL
DALSKLLELLIAYFKVEIGRKLLDHLTAWCRVEVLDTLFGQDLAEQMPTKIIVSIINIFH
LLPPQADMFLNDLLLKVMLLERKLRLQLDSPFRTPLARYLNRFHNPVTEYFKKNMTLRQL
VLFMCNIVQRPEAKELAEDFEKELDNFYDFYISNIPKNQVRVVSFFTNMVDLFNTMVITN
GDEWLKKKGNMILKLKDMLNLTLKTIKENSFYIDHLQLNQSIAKFQALYLRFTELSERDQ
NPLLLDFIDFSFSNGIKASYSLKKFIFHNIIASSNKEKQNNFINDATLFVLSDKCLDARI
FVLKNVINSTLIYEVATSGSLKSYLVEDKKPKWLELLHNKIWKNSNAILAYDVLDHHDLF
RFELLQLSAIFIKADPEIIAEIKKDIIKFCWNFIKLEDTLIKQSAYLVTSYFISKFDFPI
KVVTQVFVALLRSSHVEARYLVKQSLDVLTPVLHERMNAAGTPDTWINWVKRVMVENSSS
QNNILYQFLISHPDLFFNSRDLFISNIIHHMNKITFMSNSNSDSHTLAIDLASLILYWEN
KTLEITNVNNTKTDSDGDVVMSDSKSDINPVEADTTAIIVDANNNSPISLHLREACTAFL
IRYVCASNHRAIETELGLRAINILSELISDKHWTNVNVKLVYFEKFLIFQDLDSENILYY
CMNALDVLYVFFKNKTKEWIMENLPTIQNLLEKCIKSDHHDVQEALQKVLQVIMKAIKAQ
GVSVIIEEESPGKTFIQMLTSVITQDLQETSSVTAGVTLAWVLFMNFPDNIVPLLTPLMK
TFSKLCKDHLSISQPKDAMALEEARITTKLLEKVLYILSLKVSLLGDSRRPFLSTVALLI
DHSMDQNFLRKIVNMSRSWIFNTEIFPTVKEKAAILTKMLAFEIRGEPSLSKLFYEIVLK
LFDQEHFNNTEITVRMEQPFLVGTRVEDIGIRKRFMTILDNSLERDIKERLYYVIRDQNW
EFIADYPWLNQALQLLYGSFNREKELSLKNIYCLSPPSILQEYLPENAEMVTEVNDLELS
NFVKGHIASMQGLCRIISSDFIDSLIEIFYQDPKAIHRAWVTLFPQVYKSIPKNEKYGFV
RSIITLLSKPYHTRQISSRTNVINMLLDSISKIESLELPPHLVKYLAISYNAWYQSINIL
ESIQSNTSIDNTKIIEANEDALLELYVNLQEEDMFYGLWRRRAKYTETNIGLSYEQIGLW
DKAQQLYEVAQVKARSGALPYSQSEYALWEDNWIQCAEKLQHWDVLTELAKHEGFTDLLL
ECGWRVADWNSDRDALEQSVKSVMDVPTPRRQMFKTFLALQNFAESRKGDQEVRKLCDEG
IQLSLIKWVSLPIRYTPAHKWLLHGFQQYMEFLEATQIYANLHTTTVQNLDSKAQEIKRI
LQAWRDRLPNTWDDVNMWNDLVTWRQHAFQVINNAYLPLIPALQQSNSNSNINTHAYRGY
HEIAWVINRFAHVARKHNMPDVCISQLARIYTLPNIEIQEAFLKLREQAKCHYQNMNELT
TGLDVISNTNLVYFGTVQKAEFFTLKGMFLSKLRAYEEANQAFATAVQIDLNLAKAWAQW
GFFNDRRLSEEPNNISFASNAISCYLQAAGLYKNSKIRELLCRILWLISIDDASGMLTNA
FDSFRGEIPVWYWITFIPQLLTSLSHKEANMVRHILIRIAKSYPQALHFQLRTTKEDFAV
IQRQTMAVMGDKPDTNDRNGRRQPWEYLQELNNILKTAYPLLALSLESLVAQINDRFKST
TDEDLFRLINVLLIDGTLNYNRLPFPRKNPKLPENTEKNLVKFSTTLLAPYIRPKFNADF
IDNKPDYETYIKRLRYWRRRLENKLDRASKKENLEVLCPHLSNFHHQKFEDIEIPGQYLL
NKDNNVHFIKIARFLPTVDFVRGTHSSYRRLMIRGHDGSVHSFAVQYPAVRHSRREERMF
QLYRLFNKSLSKNVETRRRSIQFNLPIAIPLSPQVRIMNDSVSFTTLHEIHNEFCKKKGF
DPDDIQDFMADKLNAAHDDALPAPDMTILKVEIFNSIQTMFVPSNVLKDHFTSLFTQFED
FWLFRKQFASQYSSFVFMSYMMMINNRTPHKIHVDKTSGNVFTLEMLPSRFPYERVKPLL
KNHDLSLPPDSPIFHNNEPVPFRLTPNIQSLIGDSALEGIFAVNLFTISRALIEPDNELN
TYLALFIRDEIISWFSNLHRPIIENPQLREMVQTNVDLIIRKVAQLGHLNSTPTVTTQFI
LDCIGSAVSPRNLARTDVNFMPWF

Primary citation

Architecture ofSaccharomyces cerevisiaeSAGA complex. Liu, G., Zheng, X., Guan, H. et al. Cell Discov (2019) 5:25-25. DOI 10.1038/s41421-019-0094-x · PubMed

Other PDB entries of the same protein (UniProt P38811), best resolution first:

Browse structure collections

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