6MTD: Rabbit 80S ribosome with eEF2 and SERBP1
Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel). Determined by electron microscopy at 3.3 Å resolution. Released 21 Nov 2018.
- Method
- Electron microscopy
- Resolution
- 3.3 Å
- Organism
- Oryctolagus cuniculus
- Chains
- 84
- Atoms
- 222,072
- Mol. weight
- 3315.37 kDa
- Ligands
- MG, ZN, GDP
- Released
- 21 Nov 2018
Explore 6MTD in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
6MTD contains 579 α-helices and 640 β-strands across 80 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain a: 6 helices, 7 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 3-5 | 3 | |
| α-helix | 42-47 | 6 | |
| β-strand | 72-74 | 3 | 17 |
| α-helix | 78-80 | 3 | |
| α-helix | 84-92 | 9 | |
| β-strand | 98 | 1 | 117 |
| β-strand | 100-101 | 2 | 18 |
| α-helix | 103-106 | 4 | |
| β-strand | 110-112 | 3 | 17 |
| β-strand | 122-126 | 5 | 18 |
| β-strand | 128-129 | 2 | 17 |
| α-helix | 131-140 | 10 | |
| β-strand | 142-146 | 5 | 18 |
Chain A: 13 helices, 19 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 3-5 | 3 | |
| α-helix | 6-9 | 4 | |
| β-strand | 18 | 1 | 24 |
| α-helix | 29-32 | 4 | |
| α-helix | 34-38 | 5 | |
| β-strand | 40-50 | 11 | 25 |
| α-helix | 51 | 1 | |
| β-strand | 57-64 | 8 | 25 |
| β-strand | 71-77 | 7 | 25 |
| α-helix | 78 | 1 | |
| β-strand | 79 | 1 | 26 |
| β-strand | 83 | 1 | 27 |
| α-helix | 86 | 1 | |
| β-strand | 87-91 | 5 | 25 |
| β-strand | 101-103 | 3 | 25 |
| β-strand | 112-114 | 3 | 25 |
| β-strand | 116 | 1 | 28 |
| β-strand | 126 | 1 | 28 |
| β-strand | 134-140 | 7 | 25 |
| α-helix | 142-144 | 3 | |
| β-strand | 145-149 | 5 | 25 |
| β-strand | 155-159 | 5 | 25 |
| β-strand | 163-166 | 4 | 25 |
| α-helix | 168 | 1 | |
| β-strand | 169 | 1 | 26 |
| α-helix | 178-179 | 2 | |
| α-helix | 182-192 | 11 | |
| β-strand | 193 | 1 | 24 |
| α-helix | 201-203 | 3 | |
| β-strand | 224-225 | 2 | 29 |
| α-helix | 229-230 | 2 | |
| β-strand | 237-238 | 2 | 29 |
Chain aa: 4 helices, 5 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 20-22 | 3 | 207 |
| β-strand | 29-31 | 3 | 207 |
| β-strand | 36-43 | 8 | 208 |
| α-helix | 49-56 | 8 | |
| β-strand | 57 | 1 | 118 |
| α-helix | 62-65 | 4 | |
| β-strand | 66-73 | 8 | 208 |
| α-helix | 75-80 | 6 | |
| α-helix | 97-99 | 3 | |
Chain AA: 13 helices, 9 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 6-8 | 3 | |
| α-helix | 12-21 | 10 | |
| β-strand | 25 | 1 | 204 |
| α-helix | 35-37 | 3 | |
| β-strand | 38 | 1 | 205 |
| α-helix | 41-42 | 2 | |
| β-strand | 48 | 1 | 204 |
| β-strand | 49 | 1 | 205 |
| α-helix | 51-66 | 16 | |
| β-strand | 74-77 | 4 | 206 |
| α-helix | 81-83 | 3 | |
| α-helix | 84-94 | 11 | |
| β-strand | 97-99 | 3 | 206 |
| β-strand | 121-124 | 4 | 206 |
| α-helix | 131-137 | 7 | |
| β-strand | 144-148 | 5 | 206 |
| β-strand | 159-162 | 4 | 206 |
| α-helix | 168-185 | 18 | |
| α-helix | 194-195 | 2 | |
| α-helix | 199-201 | 3 | |
| α-helix | 204-206 | 3 | |
| α-helix | 207-217 | 11 | |
Chain b: 7 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 12-19 | 8 | |
| α-helix | 22-24 | 3 | |
| α-helix | 37-48 | 12 | |
| α-helix | 49-51 | 3 | |
| α-helix | 55-75 | 21 | |
| α-helix | 91-100 | 10 | |
| α-helix | 106-115 | 10 | |
Chain B: 13 helices, 22 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 9-10 | 2 | |
| α-helix | 32-35 | 4 | |
| α-helix | 40-41 | 2 | |
| β-strand | 42-43 | 2 | 37 |
| β-strand | 45-54 | 10 | 38 |
| β-strand | 57-59 | 3 | 39 |
| β-strand | 71-73 | 3 | 39 |
| β-strand | 76-80 | 5 | 38 |
| α-helix | 82-83 | 2 | |
| β-strand | 84-95 | 12 | 40 |
| β-strand | 98-106 | 9 | 40 |
| α-helix | 112-115 | 4 | |
| α-helix | 116-118 | 3 | |
| α-helix | 134-136 | 3 | |
| α-helix | 140-156 | 17 | |
| β-strand | 159-165 | 7 | 40 |
| α-helix | 168-170 | 3 | |
| β-strand | 180-184 | 5 | 40 |
| β-strand | 185-186 | 2 | 37 |
| α-helix | 190-199 | 10 | |
| β-strand | 204-205 | 2 | 40 |
| β-strand | 216-222 | 7 | 38 |
| β-strand | 227-229 | 3 | 41 |
| α-helix | 231-234 | 4 | |
| α-helix | 237-240 | 4 | |
| β-strand | 270-272 | 3 | 41 |
| β-strand | 276-288 | 13 | 38 |
| β-strand | 292-294 | 3 | 42 |
| β-strand | 297-299 | 3 | 42 |
| β-strand | 320 | 1 | 43 |
| β-strand | 324 | 1 | 43 |
| β-strand | 330-334 | 5 | 38 |
| β-strand | 343-348 | 6 | 38 |
| β-strand | 365-367 | 3 | 39 |
| α-helix | 382-389 | 8 | |
Chain bb: 3 helices, 8 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 12-15 | 4 | |
| β-strand | 32-35 | 4 | 9 |
| β-strand | 36 | 1 | 10 |
| β-strand | 44-47 | 4 | 9 |
| β-strand | 54-55 | 2 | 11 |
| β-strand | 62-65 | 4 | 11 |
| α-helix | 71 | 1 | |
| β-strand | 72-73 | 2 | 11 |
| α-helix | 74 | 1 | |
| β-strand | 78 | 1 | 10 |
| β-strand | 81 | 1 | 9 |
Chain BB: 11 helices, 14 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 28-34 | 7 | 5 |
| β-strand | 43-50 | 8 | 5 |
| β-strand | 53 | 1 | 6 |
| β-strand | 56 | 1 | 6 |
| α-helix | 58-62 | 5 | |
| β-strand | 66-70 | 5 | 7 |
| α-helix | 71-74 | 4 | |
| β-strand | 82-87 | 6 | 7 |
| β-strand | 90-91 | 2 | 5 |
| β-strand | 95-97 | 3 | 5 |
| β-strand | 100-105 | 6 | 7 |
| α-helix | 107-113 | 7 | |
| β-strand | 120-128 | 9 | 7 |
| β-strand | 134-142 | 9 | 7 |
| β-strand | 143 | 1 | 8 |
| α-helix | 144-146 | 3 | |
| α-helix | 155-157 | 3 | |
| α-helix | 158-177 | 20 | |
| α-helix | 181-188 | 8 | |
| α-helix | 192-200 | 9 | |
| β-strand | 207 | 1 | 8 |
| β-strand | 211-219 | 9 | 7 |
| α-helix | 220-221 | 2 | |
| α-helix | 223 | 1 | |
| α-helix | 225-231 | 7 | |
72 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| 28S rRNA | 5 | RNA | 3597 | Oryctolagus cuniculus | |
| 5S rRNA | 7 | RNA | 120 | Oryctolagus cuniculus | |
| 5.8S rRNA | 8 | RNA | 151 | Oryctolagus cuniculus | |
| uL2 | A | protein | 248 | Oryctolagus cuniculus | G1TT27 (AlphaFold model) |
| uL3 | B | protein | 394 | Oryctolagus cuniculus | G1TL06 (AlphaFold model) |
| uL4 | C | protein | 362 | Oryctolagus cuniculus | G1SVW5 (AlphaFold model) |
| uL18 | D | protein | 293 | Oryctolagus cuniculus | P19949 (AlphaFold model) |
| eL6 | E | protein | 291 | Oryctolagus cuniculus | G1SKF7 |
| uL30 | F | protein | 225 | Oryctolagus cuniculus | G1SV32 |
| eL8 | G | protein | 319 | Oryctolagus cuniculus | |
| uL6 | H | protein | 190 | Oryctolagus cuniculus | G1SWI6 |
| uL16 | I | protein | 214 | Oryctolagus cuniculus | B7NZQ2 |
72 more molecules are not listed.
Sequence of entity 1 (5), FASTA
>6MTD_1 28S rRNA (chains 5)
CGCGACCUCAGAUCAGACGUGGCGACCCGCUGAAUUUAAGCAUAUUAGUCAGCGGAGGAA
AAGAAACUAACCAGGAUUCCCUCAGUAACGGCGAGUGAACAGGGAAGAGCCCAGCGCCGA
AUCCCCGCCCCGCGGCGGGGCGCGGGAAAUGUGGCGUACGGAAGACCCACUCCCCGGCGC
CGGGGGGCCCAAGUCCUUCUGAUCGAGGCCCAGCCCGUGGACGGUGUGAGGCCGGUAGCG
GCCCCCGGCGCGCCGGGCCCGGGUCUUCCCGGAGUCGGGUUGCUUGGGAAUGCAGCCCAA
AGCGGGUGGUAAACUCCAUCUAAGGCUAAAUACCGGCACGAGACCGAUAGUCAACAAGUA
CCGUAAGGGAAAGUUGAAAAGAACUUUGAAGAGAGAGUUCAAGAGGGCGUGAAACCGUUA
AGAGGUAAACGGGUGGGGUCCGCGCAGUCCGCCCGGAGGAUUCAACCCGGCGGCGCGGUC
CGGCCGUGCCGGCGGGGCGGAUCUCCCGCUCCCGUCGGCGGGGGACCGCCCCCCGGCCGG
CGACCGGCCGCCGCCGGGCGCAUUUCCACCGCGGCGGUGCGCCGCGACCGGCUCCGGGAC
GGCUGGGAAGGCCCCGGCGGGGAAGGUGGCCCGGGGGCCCCGGGUGUUACAGCCCCGCCC
CGGCAGCAGCAGCUCGCCGAAUCCCGGGGCCGAGGGAGCGAGACCCGUGCCGCCGCGCUC
UCCCCCCUGGGGGGGCCGGGCCACCCCUCCCACGGCGCGACCGCUGGGGCGGACUGUCCA
GUGCGCCCCGGGCGGGUCGCGCCGUCGGGCCCGGGGGGCCACGCGUCCCCCGCGAGCGCA
CGGGGUCGGCGGCGAUGUCGGCUACCCACCCGACCCGUCUUGAAACACGGACCAAGGAGU
CUAACACGUGCGCGAGUCGGGGGCUACGAAAGCCGCCGUGGCGCAAUGAAGGUGAAGGCC
GGCGGCGCGCCGCCGGCCGAGGUGGGAUCCCGAGGCCUUCCAGUCCGCCGAGGGCGCACC
ACCGGCCCGUCUCGCCCGCCGCGCCGGGGAGGUGGAGCACGAGCGCACGUGUUAGGACCC
GAAAGAUGGUGAACUAUGCCUGGGCAGGGCGAAGCCAGAGGAAACUCUGGUGGAGGUCCG
UAGCGGUCCUGACGUGCGAAUCGGUCGUCCGACCUGGGUAUAGGGGCGAAAGACUAAUCG
AACCAUCUAGUAGCUGGUUCCCUCCAAAGUUUCCCUCAGGAUAGCUGGCGCUCUCCGCAG
UUUUAUCCGGUAAAGCGAAUGAUUAGAGGUCUUGGGGCCGAAACGAUCUCAACCUAUUCU
CAAACUUUAAAUGGGUAAGAAGCCCGGCUCGCUGGUGUGGAGCCGGGCGUGGAAUGCGAG
UGCCUAGUGGGCCACUUUUGGUAAGCAGAACUGGCGCUGCGGGAUGAACCGAACGCCGGG
UUAAGGCGCCCGAUGCCGACGCUCAUCAGACCCCAGAAAAGGUGUUGGUUGAUAUAGACA
GCAGGAUGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCACCUGCCG
AAUCAACUAGCCCUGAAAAUGGAUGGCGCUGGAGCGUCGGGCCCAUACCCGGCCGUCGCU
GGCAGUCGGCAGAGCGAGAAAGAGAGUGGCGCGGACGCUACGCCGCGACGAGUAGGAGGG
CCGCUGCGGUGAGCCUUGAAGCCUAGGGCGCGGGCCCGGGUGGAGCCGCCGCAGGUGCAG
AUCUUGGUGGUAGUAGCAAAUAUUCAAACGAGAACUUUGAAGGCCGAAGUGGAGAAGGGU
UCCAUGUGAACAGCAGUUGAACAUGGGUCAGUCGGUCCUGAGAGAUGGGCGAGCGCCGUU
CCGAAGGGACGGGCGAUGGCCUCCGUUGCCCUCAGCCGAUCGAAAGGGAGUCGGGUUCAG
AUCCCCGAAUCCGGAGUGGCGGAGAUGGGCGCCGCGAGGCGUCCAGUGCGGUAACGCGAC
CGAUCCCGGAGAAGCCGGCGGGAGCCCCGGGGAGAGUUCUCUUUUCUUUGUGAAGGGCAG
GGCGCCCUGGAAUGGGUUCGCCCCGAGAGAGGGGCCCGUGCCUUGGAAAGCGUCGCGGUU
CCGGCGGCGUCCGGUGAGCUCUCGCUGGCCCUUGAAAAUCCGGGGGAGAGGGUGUAAAUC
UCGCGCCGGGCCGUACCCAUAUCCGCAGCAGGUCUCCAAGGUGAACAGCCUCUGGCAUGU
UGGAACAAUGUAGGUAAGGGAAGUCGGCAAGCCGGAUCCGUAACUUCGGGAUAAGGAUUG
GCUCUAAGGGCUGGCAGCCGACUUAGAACUGGUGCGGACCAGGGGAAUCCGACUGUUUAA
UUAAAACAAAGCAUCGCGAAGGCCCGCGGCGGGUGUUGACGCGAUGUGAUUUCUGCCCAG
UGCUCUGAAUGUCAAAGUGAAGAAAUUCAAUGAAGCGCGGGUAAACGGCGGGAGUAACUA
UGACUCUCUUAAGGUAGCCAAAUGCCUCGUCAUCUAAUUAGUGACGCGCAUGAAUGGAUG
AACGAGAUUCCCACUGUCCCUACCUACUAUCCAGCGAAACCACAGCCAAGGGAACGGGCU
UGGCGGAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUUGACUCUAGUCUGGCACGGUGAA
GAGACAUGAGAAGUGUAGAAUAAGUGGGAGGCCGCCGGUGAAAUACCACUACUCUGAUCG
UUUUUUCACUGACCCGGUGAGGCGGGGGGGCGAGCCGGGCUCUCGCUUCUGGCGCCAAGC
GCCCGGCCGGCCGGGCGCGACCCGCUCCGGGGACAGUGCCAGGUGGGGAGUUUGACUGGG
GCGGUACACCUGUCAAACGGUAACGCAGGUGUCCUAAGGCGAGCUCAGGGAGGACAGAAA
CCUCCCGUGGAGCAGAAGGGCAAAAGCUCGCUUGAUCUUGAUUUUCAGUACGAAUACAGA
CCGUGAAAGCGGGGCCUCACGAUCCUUCUGACCUUUUGGGUUUUAAGCAGGAGGUGUCAG
AAAAGUUACCACAGGGAUAACUGGCUUGUGGCGGCCAAGCGUUCAUAGCGACGUCGCUUU
UUGAUCCUUCGAUGUCGGCUCUUCCUAUCAUUGUGAAGCAGAAUUCACCAAGCGUUGGAU
UGUUCACCCACUAAUAGGGAACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUU
UACCCUACUGAUGAUGUGUUGUUGCCAUGGUAAUCCUGCUCAGUACGAGAGGAACCGCAG
GUUCAGACAUUUGGUGUAUGUGCUUGGCUGAGGAGCCAAUGGGGCGAAGCUACCAUCUGU
GGGAUUAUGACUGAACGCCUCUAAGUCAGAAUCCCGCCCAGGCGGAACGAUAGCGCCGGA
GCCUCGGUUGGCCUCGGAUAGCCGGUCCCCCGCCGGGGUCCGGUGCGGAGAGCCCUUCGU
CCCGGGAAACGGGGCGGCCGGAAAGGGGGCCGCCCUCUCGCCCGUCACGCACCGCACGUU
CGUGGGGAACCUGGCGCUAAACCAUUCGUAGACGACCUGCUUCUGGGUCGGGGUUUCGUA
CGUAGCAGAGCAGCUGCUGCGAUCUAUUGAAAGUCAGCCCUCGACACAAGGGUUUGU
Sequence of entity 2 (7), FASTA
>6MTD_2 5S rRNA (chains 7)
GUCUACGGCCAUACCACCCUGAACGCGCCCGAUCUCGUCUGAUCUCGGAAGCUAAGCAGG
GUCGGGCCUGGUUAGUACUUGGAUGGGAGACCGCCUGGGAAUACCGGGUGCUGUAGGCUU
Sequence of entity 3 (8), FASTA
>6MTD_3 5.8S rRNA (chains 8)
CGACUCUUAGCGGUGGAUCACUCGGCUCGUGCGUCGAUGAAGAACGCAGCUAGCUGCGAG
AAUUAAUGUGAAUUGCAGGUUGAUCAUCGACACUUCGAACGCACUUGCGGCCCCGGGUUC
CUCCCGGGGCUACGCCUGUCUGAGCGUCGCU
Sequence of entity 4 (A), FASTA
>6MTD_4 uL2 (chains A)
GRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKV
VFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPG
DRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILK
AGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAAR
RTGRLRGT
Sequence of entity 5 (B), FASTA
>6MTD_5 uL3 (chains B)
SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD
RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN
WHKSKKKAFTKYCKKWQDDAGKRQLDKDFSSMKKYCQVIRVLAHTQMRLLPLRQKKAHLM
EIQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLP
RKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKN
NASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALE
KIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKD
Sequence of entity 6 (C), FASTA
>6MTD_6 uL4 (chains C)
ACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQ
TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKR
YAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIK
KVYASQRMRAGKGKMRNRRRIQRRGPCVIYNEDNGIVKAFRNIPGITLLNVTKLNILKLA
PGGHVGRFCIWTESAFRKLDDLYGTWRKAASLKSNYNLPMHKMLNTDLSRILKSPEIQRA
LRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLRVERAAAALAAK
SD
Sequence of entity 7 (D), FASTA
>6MTD_7 uL18 (chains D)
FVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIIC
QIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQ
VEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPG
YDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNNVTPDMMEEMYKK
AHAAIRENPVYEKKPKREVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERAA
Sequence of entity 8 (E), FASTA
>6MTD_8 eL6 (chains E)
MAGEKAPAAKPDATKKSPAKKADHARGKAKKKTLAEKKPKKGKPHCSRNPVLVRGIGRYS
RSAMYSRKALYKRKYAAPKSRIERKKKREKVLATVTKPVGGDKNGGTRVVKLRKMPRYYP
TEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLSSGLLLVTG
PLSLNRVPLRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEK
EKYEITEQRKVDQKAVDSQILPKIKAVPQLQGYLRSVFALTNGVYPHKLVF
Sequence of entity 9 (F), FASTA
>6MTD_9 uL30 (chains F)
NFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYV
PAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWG
YPNLKSVNELIYKRGYGKINKKRIALTDNTLIARSLGKYNIICMEDLIHEIYTVGKHFKE
ANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN
Sequence of entity 10 (G), FASTA
>6MTD_10 eL8 (chains G)
MSSYRLGYCMKEERHNLVLCLWSQSPGILNSKCLWPFTNIHLLVGALPREGAGGAWGGGR
SEQLPTCSTTHHDFTWDKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQR
AILYKRLKVPPAINQFTQVLDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGD
VPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCILKGK
ARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSV
ARIAKLEKAKAKELATKLG
Sequence of entity 11 (H), FASTA
>6MTD_11 uL6 (chains H)
MKTILSNQTVDIPENVDISLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW
WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE
KYIRRVRMRPGVACSVSQAQKDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
VSEKGTVQQA
Sequence of entity 12 (I), FASTA
>6MTD_12 uL16 (chains I)
MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
KPQGTVARVHIGQVIMSIRTKLQNKEHVVEALRRAKFKFPGRQKIHISKKWGFTKFNADE
FEDMVAEKRLIPDGCGVKYIPNRGPLDKWRALHS
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| MG | Magnesium ion | Mg | 297 |
| ZN | Zinc ion | Zn | 8 |
| GDP | Guanosine-5'-diphosphate | C10 H15 N5 O11 P2 | 1 |
Primary citation
Structures of translationally inactive mammalian ribosomes. Brown, A., Baird, M.R., Yip, M.C. et al. Elife (2018) 7. DOI 10.7554/eLife.40486 · PubMed
Other PDB entries of the same protein (UniProt G1TT27 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 11IQ 2.4 Å, Rabbit 80S with eEF2,eIF5A and SERBP1
- 8SCB 2.5 Å, Terminating ribosome with SRI-41315
- 9MR4 2.65 Å, NAC: Ribosome nascent chain complex(Oxa1L)
- 9RHU 2.65 Å, Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A…
- 8RJB 2.69 Å, Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in…
- 8VVQ 2.7 Å, Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from…
- 8RJD 2.79 Å, Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in…
- 8B6C 2.79 Å, Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative…
- 6SGC 2.8 Å, Rabbit 80S ribosome stalled on a poly(A) tail
- 7UCK 2.8 Å, 80S translation initiation complex with ac4c(-1) mRNA and Harringtonine
- 9BDL 2.8 Å, 80S ribosome with angiogenin
- 9QQA 2.8 Å, Ternary complex of translating ribosome, NAC and NMT1
Browse structure collections
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