6P5K: Mammalian 80S ribosome
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3). Determined by electron microscopy at 3.1 Å resolution. Released 18 Sept 2019.
- Method
- Electron microscopy
- Resolution
- 3.1 Å
- Organisms
- Oryctolagus cuniculus, Israeli acute paralysis virus
- Chains
- 81
- Atoms
- 215,976
- Mol. weight
- 3412.02 kDa
- Released
- 18 Sept 2019
Explore 6P5K in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
6P5K contains 495 α-helices and 579 β-strands across 76 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain a: 5 helices, 6 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 47 | 1 | 148 |
| β-strand | 50 | 1 | 106 |
| α-helix | 52-61 | 10 | |
| β-strand | 67-68 | 2 | 149 |
| α-helix | 72-76 | 5 | |
| β-strand | 79 | 1 | 148 |
| α-helix | 81-86 | 6 | |
| α-helix | 89-92 | 4 | |
| β-strand | 97-101 | 5 | 149 |
| β-strand | 108-111 | 4 | 149 |
| α-helix | 112-113 | 2 | |
Chain Aa: 8 helices, 7 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 7-11 | 5 | |
| α-helix | 42-48 | 7 | |
| β-strand | 72-73 | 2 | 24 |
| α-helix | 75-77 | 3 | |
| α-helix | 84-92 | 9 | |
| α-helix | 97 | 1 | |
| β-strand | 98 | 1 | 105 |
| α-helix | 99 | 1 | |
| β-strand | 100-101 | 2 | 25 |
| β-strand | 110-111 | 2 | 24 |
| α-helix | 116-118 | 3 | |
| β-strand | 123-125 | 3 | 25 |
| β-strand | 128-129 | 2 | 24 |
| α-helix | 131-140 | 10 | |
| β-strand | 143-145 | 3 | 25 |
Chain AA: 10 helices, 17 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 3-5 | 3 | |
| α-helix | 6-12 | 7 | |
| α-helix | 30-32 | 3 | |
| α-helix | 34-37 | 4 | |
| β-strand | 40-49 | 10 | 30 |
| β-strand | 58-64 | 7 | 30 |
| α-helix | 65 | 1 | |
| β-strand | 71-77 | 7 | 30 |
| α-helix | 78 | 1 | |
| β-strand | 79 | 1 | 31 |
| β-strand | 83 | 1 | 32 |
| β-strand | 87-91 | 5 | 30 |
| β-strand | 101-103 | 3 | 33 |
| α-helix | 104-106 | 3 | |
| β-strand | 112-114 | 3 | 33 |
| β-strand | 116 | 1 | 34 |
| β-strand | 126 | 1 | 34 |
| β-strand | 134-140 | 7 | 33 |
| β-strand | 145-149 | 5 | 33 |
| β-strand | 155-158 | 4 | 33 |
| β-strand | 163-166 | 4 | 33 |
| α-helix | 168 | 1 | |
| β-strand | 169 | 1 | 31 |
| α-helix | 182-190 | 9 | |
| β-strand | 224-225 | 2 | 35 |
| α-helix | 229-230 | 2 | |
| β-strand | 237-238 | 2 | 35 |
Chain Ab: 7 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 12-16 | 5 | |
| α-helix | 22-24 | 3 | |
| α-helix | 37-48 | 12 | |
| α-helix | 55-61 | 7 | |
| α-helix | 65-69 | 5 | |
| α-helix | 91-100 | 10 | |
| α-helix | 106-113 | 8 | |
Chain AB: 14 helices, 23 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 27-28 | 2 | |
| α-helix | 32-35 | 4 | |
| α-helix | 40-41 | 2 | |
| β-strand | 43 | 1 | 40 |
| β-strand | 45-50 | 6 | 41 |
| β-strand | 54 | 1 | 41 |
| β-strand | 56-59 | 4 | 42 |
| β-strand | 71-73 | 3 | 42 |
| β-strand | 76-80 | 5 | 41 |
| α-helix | 82-83 | 2 | |
| β-strand | 84-93 | 10 | 43 |
| β-strand | 100-106 | 7 | 43 |
| α-helix | 112-116 | 5 | |
| α-helix | 134-136 | 3 | |
| α-helix | 142-153 | 12 | |
| β-strand | 159-165 | 7 | 43 |
| α-helix | 168-170 | 3 | |
| β-strand | 182-184 | 3 | 43 |
| β-strand | 185 | 1 | 40 |
| α-helix | 190-199 | 10 | |
| β-strand | 204-205 | 2 | 43 |
| α-helix | 207-209 | 3 | |
| β-strand | 216-222 | 7 | 41 |
| β-strand | 227-229 | 3 | 44 |
| α-helix | 231-234 | 4 | |
| α-helix | 237-240 | 4 | |
| β-strand | 270-272 | 3 | 44 |
| β-strand | 276-286 | 11 | 41 |
| α-helix | 288-291 | 4 | |
| β-strand | 292-293 | 2 | 45 |
| β-strand | 298-299 | 2 | 45 |
| β-strand | 320 | 1 | 46 |
| β-strand | 324 | 1 | 46 |
| β-strand | 330-334 | 5 | 41 |
| β-strand | 344-349 | 6 | 41 |
| β-strand | 365-368 | 4 | 42 |
| α-helix | 382-389 | 8 | |
Chain Ac: 4 helices, 4 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 13-23 | 11 | |
| β-strand | 26-29 | 4 | 47 |
| α-helix | 32-39 | 8 | |
| β-strand | 45-48 | 4 | 47 |
| α-helix | 54-66 | 13 | |
| β-strand | 70-73 | 4 | 47 |
| α-helix | 78-84 | 7 | |
| β-strand | 93-98 | 6 | 47 |
Chain AC: 20 helices, 10 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 7-11 | 5 | 50 |
| β-strand | 17-23 | 7 | 50 |
| α-helix | 24-25 | 2 | |
| α-helix | 26-29 | 4 | |
| α-helix | 34-44 | 11 | |
| β-strand | 65-66 | 2 | 51 |
| β-strand | 77-78 | 2 | 51 |
| α-helix | 79-81 | 3 | |
| α-helix | 104-106 | 3 | |
| α-helix | 117-132 | 16 | |
| α-helix | 134-140 | 7 | |
| β-strand | 152-154 | 3 | 50 |
| α-helix | 158-160 | 3 | |
| α-helix | 164-173 | 10 | |
| α-helix | 177-185 | 9 | |
| β-strand | 188-189 | 2 | 52 |
| α-helix | 190-191 | 2 | |
| α-helix | 193-196 | 4 | |
| β-strand | 201-202 | 2 | 52 |
| β-strand | 208-211 | 4 | 50 |
| α-helix | 217-221 | 5 | |
| β-strand | 228-231 | 4 | 50 |
| α-helix | 237-240 | 4 | |
| α-helix | 242-244 | 3 | |
| β-strand | 250-253 | 4 | 50 |
| α-helix | 254-263 | 10 | |
| α-helix | 279-282 | 4 | |
| α-helix | 296-300 | 5 | |
| α-helix | 322-328 | 7 | |
| α-helix | 331-360 | 30 | |
Chain Ad: 4 helices, 4 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 22-28 | 7 | 53 |
| α-helix | 38-40 | 3 | |
| α-helix | 42-56 | 15 | |
| β-strand | 62-64 | 3 | 53 |
| α-helix | 66-72 | 7 | |
| β-strand | 83-92 | 10 | 53 |
| α-helix | 93-94 | 2 | |
| β-strand | 102-108 | 7 | 53 |
68 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| 28S rRNA | 5 | RNA | 3594 | Oryctolagus cuniculus | |
| 5S rRNA | 7 | RNA | 119 | Oryctolagus cuniculus | |
| 5.8S rRNA | 8 | RNA | 156 | Oryctolagus cuniculus | |
| uL2 | AA | protein | 257 | Oryctolagus cuniculus | G1TT27 (AlphaFold model) |
| uL3 | AB | protein | 403 | Oryctolagus cuniculus | |
| uL4 | AC | protein | 392 | Oryctolagus cuniculus | G1SVW5 (AlphaFold model) |
| uL18 | AD | protein | 297 | Oryctolagus cuniculus | P19949 (AlphaFold model) |
| eL6 | AE | protein | 291 | Oryctolagus cuniculus | G1SKF7 (AlphaFold model) |
| uL30 | AF | protein | 249 | Oryctolagus cuniculus | G1SV32 |
| eL8 | AG | protein | 242 | Oryctolagus cuniculus | G1STW0 |
| uL6 | AH | protein | 192 | Oryctolagus cuniculus | G1SWI6 |
| uL16 | AI | protein | 214 | Oryctolagus cuniculus | B7NZQ2 |
69 more molecules are not listed.
Sequence of entity 1 (5), FASTA
>6P5K_1 28S rRNA (chains 5)
CGCGACCUCAGAUCAGACGUGGCGACCCGCUGAAUUUAAGCAUAUUAGUCAGCGGAGGAA
AAGAAACUAACCAGGAUUCCCUCAGUAACGGCGAGUGAACAGGGAAGAGCCCAGCGCCGA
AUCCCCGCCCCGCGGCGGGGCGCGGGAAAUGUGGCGUACGGAAGACCCACUCCCCGGCGC
CGGGGGGCCCAAGUCCUUCUGAUCGAGGCCCAGCCCGUGGACGGUGUGAGGCCGGUAGCG
GCCCCCGGCGCGCCGGGCCCGGGUCUUCCCGGAGUCGGGUUGCUUGGGAAUGCAGCCCAA
AGCGGGUGGUAAACUCCAUCUAAGGCUAAAUACCGGCACGAGACCGAUAGUCAACAAGUA
CCGUAAGGGAAAGUUGAAAAGAACUUUGAAGAGAGAGUUCAAGAGGGCGUGAAACCGUUA
AGAGGUAAACGGGUGGGGUCCGCGCAGUCCGCCCGGAGGAUUCAACCCGGCGGCGGGUCC
GGCCGUGCCGGCGGGGCGGAUCUCCCGCUCCCGUCGGCGGGGGACCGCCCCCCGGCCGGC
GACCGGCCGCCGCCGGGCGCAUUUCCACCGCGGCGGUGCGCCGCGACCGGCUCCGGGACG
GCUGGGAAGGCCCGGCGGGGAAGGUGGCCCGGGGGCCCCGGGUGUUACAGCCCACCCGGC
AGCAGCAGCUCGCCGAAUCCCGGGGCCGAGGGAGCGAGACCUGUGUCGCCGCGCUCUCCC
CCCUGGGGGGGCCGGGCCACCCCUCCCACGGCGCGACCGCUGGGGCGGACUGUCCAGUGC
GCCCCGGGCGGGUCGCGCCGUCGGGCCCGGGGGGCCACGCGUCCCCCGCGAGCGCACGGG
GUCGGCGGCGAUGUCGGCUACCCACCCGACCCGUCUUGAAACACGGACCAAGGAGUCUAA
CACGUGCGCGAGUCGGGGGCUACGAAAGCCGCCGUGGCGCAAUGAAGGUGAAGGCCGGCG
CCGCCGGCCGAGGUGGGAUCCCGAGGCCUUCCAGUCCGCCGAGGGCGCACCACCGGCCCG
UCUCGCCCGCCGCGCCGGGGAGGUGGAGCACGAGCGCACGUGUUAGGACCCGAAAGAUGG
UGAACUAUGCCUGGGCAGGGCGAAGCCAGAGGAAACUCUGGUGGAGGUCCGUAGCGGUCC
UGACGUGCGAAUCGGUCGUCCGACCUGGGUAUAGGGGCGAAAGACUAAUCGAACCAUCUA
GUAGCUGGUUCCCUCCAAAGUUUCCCUCAGGAUAGCUGGCGCUCUCCGCAGUUUUAUCCG
GUAAAGCGAAUGAUUAGAGGUCUUGGGGCCGAAACGAUCUCAACCUAUUCUCAAACUUUA
AAUGGGUAAGAAGCCCGGCUCGCUGGUGUGGAGCCGGGCGUGGAAUGCGAGUGCCUAGUG
GGCCACUUUUGGUAAGCAGAACUGGCGCUGCGGGAUGAACCGAACGCCGGGUUAAGGCGC
CCGAUGCCGACGCUCAUCAGACCCCAGAAAAGGUGUUGGUUGAUAUAGACAGCAGGAUGG
UGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCACCUGCCGAAUCAACUA
GCCCUGAAAAUGGAUGGCGCUGGAGCGUCGGGCCCAUACCCGGCCGUCGCUGGCAGUCGG
CAGAGCGAGAAAGAGAGUGGCGCGGACGCUACGCCGCGACGAGUAGGAGGGCCGCUGCGG
UGAGCCUUGAAGCCUAGGGCGCGGGCCCGGGUGGAGCCGCCGCAGGUGCAGAUCUUGGUG
GUAGUAGCAAAUAUUCAAACGAGAACUUUGAAGGCCGAAGUGGAGAAGGGUUCCAUGUGA
ACAGCAGUUGAACAUGGGUCAGUCGGUCCUGAGAGAUGGGCGAGCGCCGUUCCGAAGGGA
CGGGCGAUGGCCUCCGUUGCCCUCAGCCGAUCGAAAGGGAGUCGGGUUCAGAUCCCCGAA
UCCGGAGUGGCGGAGAUGGGCGCCGCGAGGCGUCCAGUGCGGUAACGCGACCGAUCCCGG
AGAAGCCGGCGGGAGCCCCGGGGAGAGUUCUCUUUUCUUUGUGAAGGGCAGGGCGCCCUG
GAAUGGGUUCGCCCCGAGAGAGGGGCCCGUGCCUUGGAAAGCGUCGCGGUUCCGGCGGCG
UCCGGUGAGCUCUCGCUGGCCCUUGAAAAUCCGGGGGAGAGGGUGUAAAUCUCGCGCCGG
GCCGUACCCAUAUCCGCAGCAGGUCUCCAAGGUGAACAGCCUCUGGCAUGUUGGAACAAU
GUAGGUAAGGGAAGUCGGCAAGCCGGAUCCGUAACUUCGGGAUAAGGAUUGGCUCUAAGG
GCUGGCAGCCGACUUAGAACUGGUGCGGACCAGGGGAAUCCGACUGUUUAAUUAAAACAA
AGCAUCGCGAAGGCCCGCGGCGGGUGUUGACGCGAUGUGAUUUCUGCCCAGUGCUCUGAA
UGUCAAAGUGAAGAAAUUCAAUGAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCU
UAAGGUAGCCAAAUGCCUCGUCAUCUAAUUAGUGACGCGCAUGAAUGGAUGAACGAGAUU
CCCACUGUCCCUACCUACUAUCCAGCGAAACCACAGCCAAGGGAACGGGCUUGGCGGAAU
CAGCGGGGAAAGAAGACCCUGUUGAGCUUGACUCUAGUCUGGCACGGUGAAGAGACAUGA
GAGGUGUAGAAUAAGUGGGAGGCCCGGGCCGCCGGUGAAAUACCACUACUCUGAUCGUUU
UUUCACUGACCCGGUGAGGCGGGGGGGCGAGCCGGGCUCUCGCUUCUGGCGCCAAGCGCC
CGGCCGGCCGGGCGCGACCCGCUCCGGGGACAGUGCCAGGUGGGGAGUUUGACUGGGGCG
GUACACCUGUCAAACGGUAACGCAGGUGUCCUAAGGCGAGCUCAGGGAGGACAGAAACCU
CCCGUGGAGCAGAAGGGCAAAAGCUCGCUUGAUCUUGAUUUUCAGUACGAAUACAGACCG
UGAAAGCGGGGCCUCACGAUCCUUCUGACCUUUUGGGUUUUAAGCAGGAGGUGUCAGAAA
AGUUACCACAGGGAUAACUGGCUUGUGGCGGCCAAGCGUUCAUAGCGACGUCGCUUUUUG
AUCCUUCGAUGUCGGCUCUUCCUAUCAUUGUGAAGCAGAAUUCACCAAGCGUUGGAUUGU
UCACCCACUAAUAGGGAACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUAC
CCUACUGAUGAUGUGUUGUUGCCAUGGUAAUCCUGCUCAGUACGAGAGGAACCGCAGGUU
CAGACAUUUGGUGUAUGUGCUUGGCUGAGGAGCCAAUGGGGCGAAGCUACCAUCUGUGGG
AUUAUGACUGAACGCCUCUAAGUCAGAAUCCCGCCCAGGCGGAACGAUAGCGCCGGAGCC
UCGGUUGGCCUCGGAUAGCCGGUCCCCCGCCGGGGUCCGGUGCGGAGAGCCCUUCGUCCC
GGGAAACGGGGCGGCCGGAAAGGGGGCCGCCCUCUCGCCCGUCACGCACCGCACGUUCGU
GGGGAACCUGGCGCUAAACCAUUCGUAGACGACCUGCUUCUGGGUCGGGGUUUCGUACGU
AGCAGAGCAGCUGCUGCGAUCUAUUGAAAGUCAGCCCUCGACACAAGGGUUUGU
Sequence of entity 2 (7), FASTA
>6P5K_2 5S rRNA (chains 7)
GUCUACGGCCAUACCACCCUGAACGCGCCCGAUCUCGUCUGAUCUCGGAAGCUAAGCAGG
GUCGGGCCUGGUUAGUACUUGGAUGGGAGACCGCCUGGGAAUACCGGGUGCUGUAGGCU
Sequence of entity 3 (8), FASTA
>6P5K_3 5.8S rRNA (chains 8)
CGACUCUUAGCGGUGGAUCACUCGGCUCGUGCGUCGAUGAAGAACGCAGCUAGCUGCGAG
AAUUAAUGUGAAUUGCAGGACACAUUGAUCAUCGACACUUCGAACGCACUUGCGGCCCCG
GGUUCCUCCCGGGGCUACGCCUGUCUGAGCGUCGCU
Sequence of entity 4 (AA), FASTA
>6P5K_4 uL2 (chains AA)
MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK
VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKP
GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL
KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA
RRTGRLRGTKTVQEKEN
Sequence of entity 5 (AB), FASTA
>6P5K_5 uL3 (chains AB)
MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV
DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK
NWHKSKKKAFTKYCKKWQDDAGKRQLDKDFSSMKKYCQVIRVLAHTQMRLLPLRQKKAHL
MEIQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL
PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL
EKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKEEGA
Sequence of entity 6 (AC), FASTA
>6P5K_6 uL4 (chains AC)
AAGRRGAWLSPLPAMACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRK
NNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK
TWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKE
AVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCVIYNEDNGIVKAFRNIPG
ITLLNVTKLNILKLAPGGHVGRFCIWTESAFRKLDDLYGTWRKAASLKSNYNLPMHKMLN
TDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARN
HKLRVERAAAALAAKSDPKEAPAKKKPVVGKK
Sequence of entity 7 (AD), FASTA
>6P5K_7 uL18 (chains AD)
KGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI
ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE
GQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRF
PGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNNVTPDMMEEMY
KKAHAAIRENPVYEKKPKREVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERAAES
Sequence of entity 8 (AE), FASTA
>6P5K_8 eL6 (chains AE)
MAGEKAPAAKPDATKKSPAKKADHARGKAKKKTLAEKKPKKGKPHCSRNPVLVRGIGRYS
RSAMYSRKALYKRKYAAPKSRIERKKKREKVLATVTKPVGGDKNGGTRVVKLRKMPRYYP
TEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLSSGLLLVTG
PLSLNRVPLRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEK
EKYEITEQRKVDQKAVDSQILPKIKAVPQLQGYLRSVFALTNGVYPHKLVF
Sequence of entity 9 (AF), FASTA
>6P5K_9 uL30 (chains AF)
LFANNIREKKKVPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHK
EYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFN
GTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNTLIARSL
GKYNIICMEDLIHEIYTVGKHFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQ
INRLIRRMN
Sequence of entity 10 (AG), FASTA
>6P5K_10 eL8 (chains AG)
KKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFT
QVLDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVT
TLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCILKGKARLCRLVHRKTCTTVAF
TQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATK
LG
Sequence of entity 11 (AH), FASTA
>6P5K_11 uL6 (chains AH)
MKTILSNQTVDIPENVDISLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW
WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE
KYIRRVRMRPGVACSVSQAQKDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
VSEKGTVQQADE
Sequence of entity 12 (AI), FASTA
>6P5K_12 uL16 (chains AI)
MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
KPQGTVARVHIGQVIMSIRTKLQNKEHVVEALRRAKFKFPGRQKIHISKKWGFTKFNADE
FEDMVAEKRLIPDGCGVKYIPNRGPLDKWRALHS
Primary citation
The Israeli acute paralysis virus IRES captures host ribosomes by mimicking a ribosomal state with hybrid tRNAs. Acosta-Reyes, F., Neupane, R., Frank, J. et al. EMBO J (2019) 38:e102226-e102226. DOI 10.15252/embj.2019102226 · PubMed
Other PDB entries of the same protein (UniProt G1TT27 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 11IQ 2.4 Å, Rabbit 80S with eEF2,eIF5A and SERBP1
- 8SCB 2.5 Å, Terminating ribosome with SRI-41315
- 9MR4 2.65 Å, NAC: Ribosome nascent chain complex(Oxa1L)
- 9RHU 2.65 Å, Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A…
- 8RJB 2.69 Å, Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in…
- 8VVQ 2.7 Å, Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from…
- 8RJD 2.79 Å, Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in…
- 8B6C 2.79 Å, Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative…
- 6SGC 2.8 Å, Rabbit 80S ribosome stalled on a poly(A) tail
- 7UCK 2.8 Å, 80S translation initiation complex with ac4c(-1) mRNA and Harringtonine
- 9BDL 2.8 Å, 80S ribosome with angiogenin
- 9QQA 2.8 Å, Ternary complex of translating ribosome, NAC and NMT1
Browse structure collections
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