6Y50: 5'domain of human 17S U2 snRNP
5'domain of human 17S U2 snRNP. Determined by electron microscopy at 4.1 Å resolution. Released 1 Jul 2020.
- Method
- Electron microscopy
- Resolution
- 4.1 Å
- Organism
- Homo sapiens
- Chains
- 9
- Atoms
- 14,916
- Mol. weight
- 727.56 kDa
- Ligands
- ZN
- Released
- 1 Jul 2020
Explore 6Y50 in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
6Y50 contains 101 α-helices and 124 β-strands across 8 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain 8: 8 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 464-467 | 4 | |
| α-helix | 472-474 | 3 | |
| α-helix | 478-481 | 4 | |
| α-helix | 485-492 | 8 | |
| α-helix | 523-525 | 3 | |
| α-helix | 526-529 | 4 | |
| α-helix | 572-575 | 4 | |
| α-helix | 579-582 | 4 | |
Chain 9: 5 helices, 2 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 394-400 | 7 | |
| β-strand | 406-408 | 3 | 1 |
| β-strand | 414-416 | 3 | 1 |
| α-helix | 419-424 | 6 | |
| α-helix | 429-438 | 10 | |
| α-helix | 453-461 | 9 | |
| α-helix | 491-497 | 7 | |
Chain p: 2 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 149-178 | 30 | |
| α-helix | 190-193 | 4 | |
Chain q: 2 helices, 5 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 134-138 | 5 | 38 |
| α-helix | 146-154 | 9 | |
| β-strand | 183-187 | 5 | 38 |
| α-helix | 191-200 | 10 | |
| β-strand | 204-205 | 2 | 39 |
| β-strand | 210-211 | 2 | 39 |
| β-strand | 212-214 | 3 | 38 |
Chain u: 62 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 469-471 | 3 | |
| α-helix | 493-505 | 13 | |
| α-helix | 509-520 | 12 | |
| α-helix | 523-525 | 3 | |
| α-helix | 528-540 | 13 | |
| α-helix | 546-562 | 17 | |
| α-helix | 565-567 | 3 | |
| α-helix | 571-582 | 12 | |
| α-helix | 587-603 | 17 | |
| α-helix | 606-613 | 8 | |
| α-helix | 615-618 | 4 | |
| α-helix | 622-638 | 17 | |
| α-helix | 641-652 | 12 | |
| α-helix | 658-675 | 18 | |
| α-helix | 677-679 | 3 | |
| α-helix | 682-690 | 9 | |
| α-helix | 691-693 | 3 | |
| α-helix | 699-715 | 17 | |
| α-helix | 723-726 | 4 | |
| α-helix | 728-733 | 6 | |
| α-helix | 734-736 | 3 | |
| α-helix | 741-756 | 16 | |
| α-helix | 760-773 | 14 | |
| α-helix | 782-797 | 16 | |
| α-helix | 803-805 | 3 | |
| α-helix | 806-810 | 5 | |
| α-helix | 811-813 | 3 | |
| α-helix | 814-818 | 5 | |
| α-helix | 821-823 | 3 | |
| α-helix | 827-844 | 18 | |
| α-helix | 846-850 | 5 | |
| α-helix | 862-879 | 18 | |
| α-helix | 886-901 | 16 | |
| α-helix | 908-921 | 14 | |
| α-helix | 922-925 | 4 | |
| α-helix | 929-940 | 12 | |
| α-helix | 945-957 | 13 | |
| α-helix | 959-962 | 4 | |
| α-helix | 970-978 | 9 | |
| α-helix | 987-1003 | 17 | |
| α-helix | 1013-1024 | 12 | |
| α-helix | 1029-1042 | 14 | |
| α-helix | 1052-1062 | 11 | |
| α-helix | 1063-1065 | 3 | |
| α-helix | 1071-1088 | 18 | |
| α-helix | 1090-1102 | 13 | |
| α-helix | 1109-1122 | 14 | |
| α-helix | 1125-1127 | 3 | |
| α-helix | 1129-1133 | 5 | |
| α-helix | 1134-1136 | 3 | |
| α-helix | 1141-1157 | 17 | |
| α-helix | 1159-1161 | 3 | |
| α-helix | 1170-1177 | 8 | |
| α-helix | 1186-1196 | 11 | |
| α-helix | 1205-1215 | 11 | |
| α-helix | 1217-1219 | 3 | |
| α-helix | 1224-1241 | 18 | |
| α-helix | 1243-1250 | 8 | |
| α-helix | 1262-1274 | 13 | |
| α-helix | 1281-1283 | 3 | |
| α-helix | 1288-1290 | 3 | |
| α-helix | 1298-1300 | 3 | |
Chain v: 14 helices, 109 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 3-6 | 4 | 6 |
| β-strand | 18-20 | 3 | 7 |
| β-strand | 29-33 | 5 | 7 |
| β-strand | 37-43 | 7 | 7 |
| β-strand | 50-57 | 8 | 7 |
| β-strand | 65-66 | 2 | 8 |
| β-strand | 77-80 | 4 | 8 |
| β-strand | 84 | 1 | 9 |
| β-strand | 87-91 | 5 | 8 |
| β-strand | 93 | 1 | 10 |
| β-strand | 98 | 1 | 10 |
| β-strand | 101-105 | 5 | 8 |
| β-strand | 110 | 1 | 9 |
| β-strand | 120-122 | 3 | 11 |
| β-strand | 130-133 | 4 | 11 |
| β-strand | 136 | 1 | 12 |
| β-strand | 139-142 | 4 | 11 |
| β-strand | 144-146 | 3 | 13 |
| β-strand | 152-154 | 3 | 13 |
| β-strand | 165-173 | 9 | 12 |
| α-helix | 180 | 1 | |
| β-strand | 181-188 | 8 | 12 |
| α-helix | 199-201 | 3 | |
| β-strand | 207-212 | 6 | 12 |
| β-strand | 221-227 | 7 | 12 |
| β-strand | 234 | 1 | 14 |
| β-strand | 237-238 | 2 | 14 |
| α-helix | 239 | 1 | |
| β-strand | 247-252 | 6 | 14 |
| β-strand | 255-259 | 5 | 14 |
| β-strand | 267-270 | 4 | 14 |
| α-helix | 273 | 1 | |
| β-strand | 274 | 1 | 15 |
| β-strand | 302-304 | 3 | 16 |
| β-strand | 310-312 | 3 | 16 |
| β-strand | 316-317 | 2 | 17 |
| β-strand | 322-324 | 3 | 17 |
| β-strand | 327 | 1 | 18 |
| β-strand | 329 | 1 | 16 |
| β-strand | 336-342 | 7 | 19 |
| β-strand | 346-351 | 6 | 19 |
| β-strand | 356-360 | 5 | 19 |
| β-strand | 373 | 1 | 18 |
| β-strand | 387 | 1 | 15 |
| β-strand | 396-401 | 6 | 19 |
| β-strand | 407-413 | 7 | 20 |
| β-strand | 422-427 | 6 | 20 |
| β-strand | 434-440 | 7 | 20 |
| β-strand | 442-443 | 2 | 21 |
| β-strand | 448-450 | 3 | 22 |
| β-strand | 458-463 | 6 | 23 |
| β-strand | 471-477 | 7 | 23 |
| β-strand | 482-486 | 5 | 23 |
| β-strand | 493 | 1 | 23 |
| β-strand | 507-509 | 3 | 24 |
| β-strand | 516-520 | 5 | 24 |
| β-strand | 523-527 | 5 | 24 |
| β-strand | 533-537 | 5 | 24 |
| β-strand | 546-548 | 3 | 25 |
| β-strand | 553-558 | 6 | 25 |
| α-helix | 559-561 | 3 | |
| β-strand | 562-567 | 6 | 25 |
| β-strand | 576 | 1 | 25 |
| β-strand | 589-592 | 4 | 26 |
| α-helix | 593-596 | 4 | |
| β-strand | 605-608 | 4 | 26 |
| β-strand | 613-618 | 6 | 26 |
| β-strand | 626-632 | 7 | 26 |
| β-strand | 637-643 | 7 | 27 |
| β-strand | 664-669 | 6 | 27 |
| β-strand | 673-678 | 6 | 27 |
| β-strand | 686-690 | 5 | 27 |
| β-strand | 700-706 | 7 | 28 |
| β-strand | 709-715 | 7 | 28 |
| β-strand | 720-725 | 6 | 28 |
| β-strand | 728-733 | 6 | 28 |
| β-strand | 734-735 | 2 | 21 |
| β-strand | 741-745 | 5 | 22 |
| β-strand | 753-758 | 6 | 22 |
| β-strand | 761-765 | 5 | 22 |
| β-strand | 774-780 | 7 | 20 |
| β-strand | 784-787 | 4 | 29 |
| β-strand | 790-791 | 2 | 29 |
| β-strand | 796-804 | 9 | 29 |
| α-helix | 809-823 | 15 | |
| α-helix | 836-844 | 9 | |
| α-helix | 849-852 | 4 | |
| β-strand | 862-869 | 8 | 29 |
| β-strand | 876-881 | 6 | 29 |
| β-strand | 886 | 1 | 30 |
| β-strand | 891-894 | 4 | 30 |
| β-strand | 904-911 | 8 | 30 |
| β-strand | 914 | 1 | 31 |
| β-strand | 919 | 1 | 31 |
| β-strand | 922-928 | 7 | 30 |
| α-helix | 931-933 | 3 | |
| β-strand | 939-945 | 7 | 30 |
| β-strand | 949 | 1 | 32 |
| β-strand | 954 | 1 | 32 |
| β-strand | 959-963 | 5 | 32 |
| β-strand | 966-971 | 6 | 32 |
| β-strand | 978-983 | 6 | 32 |
| β-strand | 990 | 1 | 33 |
| β-strand | 999-1003 | 5 | 34 |
| β-strand | 1004 | 1 | 33 |
| β-strand | 1009-1015 | 7 | 34 |
| β-strand | 1020-1022 | 3 | 34 |
| β-strand | 1025-1026 | 2 | 35 |
| β-strand | 1036-1037 | 2 | 36 |
| β-strand | 1043-1047 | 5 | 36 |
| β-strand | 1052-1057 | 6 | 36 |
| β-strand | 1087-1088 | 2 | 35 |
| β-strand | 1090-1096 | 7 | 36 |
| β-strand | 1104-1107 | 4 | 6 |
| β-strand | 1111 | 1 | 37 |
| β-strand | 1113 | 1 | 37 |
| β-strand | 1116-1119 | 4 | 6 |
| β-strand | 1127-1131 | 5 | 6 |
| α-helix | 1135-1151 | 17 | |
| β-strand | 1173-1174 | 2 | 6 |
| α-helix | 1176-1179 | 4 | |
| α-helix | 1187-1196 | 10 | |
| α-helix | 1201-1215 | 15 | |
Chain x: 5 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 28-39 | 12 | |
| α-helix | 41-44 | 4 | |
| α-helix | 48-51 | 4 | |
| α-helix | 53-56 | 4 | |
| α-helix | 61-71 | 11 | |
Chain y: 3 helices, 8 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 18-19 | 2 | 2 |
| β-strand | 22 | 1 | 3 |
| β-strand | 39-42 | 4 | 4 |
| β-strand | 44-45 | 2 | 2 |
| α-helix | 47-49 | 3 | |
| α-helix | 52-54 | 3 | |
| β-strand | 57 | 1 | 5 |
| β-strand | 64 | 1 | 5 |
| β-strand | 67 | 1 | 3 |
| β-strand | 70-72 | 3 | 4 |
| α-helix | 73-76 | 4 | |
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| Splicing factor 3A subunit 3 | 9 | protein | 501 | Homo sapiens | Q12874 (AlphaFold model) |
| PHD finger-like domain-containing protein 5A | y | protein | 110 | Homo sapiens | Q7RTV0 (AlphaFold model) |
| Splicing factor 3B subunit 5 | x | protein | 86 | Homo sapiens | Q9BWJ5 (AlphaFold model) |
| Splicing factor 3B subunit 2 | 8 | protein | 895 | Homo sapiens | Q13435 (AlphaFold model) |
| Splicing factor 3B subunit 3 | v | protein | 1217 | Homo sapiens | Q15393 |
| Splicing factor 3B subunit 1 | u | protein | 1304 | Homo sapiens | O75533 |
| U2 snRNA | 2 | RNA | 188 | Homo sapiens | |
| HIV Tat-specific factor 1 | q | protein | 755 | Homo sapiens | O43719 |
| Probable ATP-dependent RNA helicase DDX46 | p | protein | 1031 | Homo sapiens | Q7L014 |
Sequence of entity 1 (9), FASTA
>6Y50_1 Splicing factor 3A subunit 3 (chains 9)
METILEQQRRYHEEKERLMDVMAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDL
YDDKDGLRKEELNAISGPNEFAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKARENP
SEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASEKLDYITYLSIFDQLFDIPKERKNA
EYKRYLEMLLEYLQDYTDRVKPLQDQNELFGKIQAEFEKKWENGTFPGWPKETSSALTHA
GAHLDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKGKSLESLDTSL
FAKNPKSKGTKRDTERNKDIAFLEAQIYEYVEILGEQRHLTHENVQRKQARTGEEREEEE
EEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCEICGNYTYRGPK
AFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQKASERWQPDTEEEYE
DSSGNVVNKKTYEDLKRQGLL
Sequence of entity 2 (y), FASTA
>6Y50_2 PHD finger-like domain-containing protein 5A (chains y)
MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI
CGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR
Sequence of entity 3 (x), FASTA
>6Y50_3 Splicing factor 3B subunit 5 (chains x)
MTDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENES
KARVRFNLMEKMLQPCGPPADKPEEN
Sequence of entity 4 (8), FASTA
>6Y50_4 Splicing factor 3B subunit 2 (chains 8)
MATEHPEPPKAELQLPPPPPPGHYGAWAAQELQAKLAEIGAPIQGNREELVERLQSYTRQ
TGIVLNRPVLRGEDGDKAAPPPMSAQLPGIPMPPPPLGLPPLQPPPPPPPPPPGLGLGFP
MAHPPNLGPPPPLRVGEPVALSEEERLKLAQQQAALLMQQEERAKQQGDHSLKEHELLEQ
QKRAAVLLEQERQQEIAKMGTPVPRPPQDMGQIGVRTPLGPRVAAPVGPVGPTPTVLPMG
APVPRPRGPPPPPGDENREMDDPSVGPKIPQALEKILQLKESRQEEMNSQQEEEEMETDA
RSSLGQSASETEEDTVSVSKKEKNRKRRNRKKKKKPQRVRGVSSESSGDREKDSTRSRGS
DSPAADVEIEYVTEEPEIYEPNFIFFKRIFEAFKLTDDVKKEKEKEPEKLDKLENSAAPK
KKGFEEEHKDSDDDSSDDEQEKKPEAPKLSKKKLRRMNRFTVAELKQLVARPDVVEMHDV
TAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIKRTGIQEMREAL
QEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYEGKEFETR
LKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPES
CSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEIDRTPWGELEPSDEESSE
EEEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPELIELRKKKIEEAMDGSET
PQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQGVEVALAPEELELDPMAM
TQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRKAQPQDSRGGSKKYKEFKF
Sequence of entity 5 (v), FASTA
>6Y50_5 Splicing factor 3B subunit 3 (chains v)
MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG
VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDT
PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGERGSI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTG
EDWYVLVGVAKDLILNPRSVAGGFVYTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVL
IGVGKLLRVYDLGKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQ
LIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRT
PPEVSKKLEDIRTRYAF
Sequence of entity 6 (u), FASTA
>6Y50_6 Splicing factor 3B subunit 1 (chains u)
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK
GSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTE
RDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPI
GTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG
YVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLV
DVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLM
SPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNL
AKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQA
RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYG
IESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSP
DEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL
ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF
QEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAV
VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRL
TPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNT
FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE
LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVY
GFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARK
VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
Sequence of entity 7 (2), FASTA
>6Y50_7 U2 snRNA (chains 2)
AUCGCUUCUCGGCCUUUUGGCUAAGAUCAAGUGUAGUAUCUGUUCUUAUCAGUUUAAUAU
CUGAUACGUCCUCUAUCCGAGGACAAUAUAUUAAAUGGAUUUUUGGAGCAGGGAGAUGGA
AUAGGAGCUUGCUCCGUCCACUCCACGCAUCGACCUGGUAUUGCAGUACCUCCAGGAACG
GUGCACCC
Sequence of entity 8 (q), FASTA
>6Y50_8 HIV Tat-specific factor 1 (chains q)
MSGTNLDGNDEFDEQLRMQELYGDGKDGDTQTDAGGEPDSLGQQPTDTPYEWDLDKKAWF
PKITEDFIATYQANYGFSNDGASSSTANVEDVHARTAEEPPQEKAPEPTDARKKGEKRKA
ESGWFHVEEDRNTNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKDNQGNL
KGDGLCCYLKRESVELALKLLDEDEIRGYKLHVEVAKFQLKGEYDASKKKKKCKDYKKKL
SMQQKQLDWRPERRAGPSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQ
IRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQVEETSR
EREERLRGWEAFLNAPEANRGLRRSDSVSASERAGPSRARHFSEHPSTSKMNAQETATGM
AFEEPIDEKKFEKTEDGGEFEEGASENNAKESSPEKEAEEGCPEKESEEGCPKRGFEGSC
SQKESEEGNPVRGSEEDSPKKESKKKTLKNDCEENGLAKESEDDLNKESEEEVGPTKESE
EDDSEKESDEDCSEKQSEDGSEREFEENGLEKDLDEEGSEKELHENVLDKELEENDSENS
EFEDDGSEKVLDEEGSEREFDEDSDEKEEEEDTYEKVFDDESDEKEDEEYADEKGLEAAD
KKAEEGDADEKLFEESDDKEDEDADGKEVEDADEKLFEDDDSNEKLFDEEEDSSEKLFDD
SDERGTLGGFGSVEEGPLSTGSSFILSSDDDDDDI
Sequence of entity 9 (p), FASTA
>6Y50_9 Probable ATP-dependent RNA helicase DDX46 (chains p)
MGRESRHYRKRSASRGRSGSRSRSRSPSDKRSKRGDDRRSRSRDRDRRRERSRSRDKRRS
RSRDRKRLRRSRSRERDRSRERRRSRSRDRRRSRSRSRGRRSRSSSPGNKSKKTENRSRS
KEKTDGGESSKEKKKDKDDKEDEKEKDAGNFDQNKLEEEMRKRKERVEKWREEQRKKAME
NIGELKKEIEEMKQGKKWSLEDDDDDEDDPAEAEKEGNEMEGEELDPLDAYMEEVKEEVK
KFNMRSVKGGGGNEKKSGPTVTKVVTVVTTKKAVVDSDKKKGELMENDQDAMEYSSEEEE
VDLQTALTGYQTKQRKLLEPVDHGKIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGI
TVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGS
GKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVY
GGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFE
PQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVI
EEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDS
IINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAY
TFITEDQARYAGDIIKALELSGTAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKF
DETEQALANERKKLQKAALGLQDSDDEDAAVDIDEQIESMFNSKKRVKDMAAPGTSSVPA
PTAGNAEKLEIAKRLALRINAQKNLGIESQDVMQQATNAILRGGTILAPTVSAKTIAEQL
AEKINAKLNYVPLEKQEEERQDGGQNESFKRYEEELEINDFPQTARWKVTSKEALQRISE
YSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRLIKEELIRLQNSY
QPTNKGRYKVL
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| ZN | Zinc ion | Zn | 3 |
Primary citation
Molecular architecture of the human 17S U2 snRNP. Zhang, Z., Will, C.L., Bertram, K. et al. Nature (2020) 583:310-313. DOI 10.1038/s41586-020-2344-3 · PubMed
Other PDB entries of the same protein (UniProt Q12874 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 7Q4O 2.1 Å, Substrate-bound A-like U2 snRNP
- 7Q4P 2.15 Å, U2 snRNP after ATP-dependent remodelling
- 7Q3L 2.21 Å, Human 17S U2 snRNP 5' domain
- 7EVO 2.5 Å, The cryo-EM structure of the human 17S U2 snRNP
- 8H6L 2.6 Å, Cryo-EM structure of human exon-defined spliceosome in the early B state.
- 8H6K 2.7 Å, Cryo-EM structure of human exon-defined spliceosome in the mature B state.
- 8HK1 2.7 Å, The cryo-EM structure of human pre-17S U2 snRNP
- 7VPX 3.0 Å, The cryo-EM structure of the human pre-A complex
- 8I0R 3.0 Å, The cryo-EM structure of human Bact-I complex
- 8I0T 3.0 Å, The cryo-EM structure of human Bact-III complex
- 7ONB 3.1 Å, Structure of the U2 5' module of the A3'-SSA complex
- 7QTT 3.1 Å, Structural organization of a late activated human spliceosome (Baqr, core region)
Browse structure collections
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