7ABG: Human pre-Bact-1 spliceosome
Human pre-Bact-1 spliceosome. Determined by electron microscopy at 7.8 Å resolution. Released 23 Dec 2020.
- Method
- Electron microscopy
- Resolution
- 7.8 Å
- Organisms
- Homo sapiens, synthetic construct
- Chains
- 58
- Atoms
- 73,818
- Mol. weight
- 2762.07 kDa
- Ligands
- IHP, GTP, MG, GTG
- Released
- 23 Dec 2020
Explore 7ABG in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
7ABG contains 534 α-helices and 507 β-strands across 54 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain 0: 1 helix, 9 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 230-236 | 7 | |
| β-strand | 238 | 1 | 79 |
| β-strand | 243 | 1 | 79 |
| β-strand | 252 | 1 | 80 |
| β-strand | 261 | 1 | 81 |
| β-strand | 263-264 | 2 | 82 |
| β-strand | 273 | 1 | 81 |
| β-strand | 307-314 | 8 | 80 |
| β-strand | 320-327 | 8 | 80 |
| β-strand | 368-369 | 2 | 82 |
Chain 4: 24 helices, 6 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 3-7 | 5 | |
| α-helix | 8-27 | 20 | |
| α-helix | 33-58 | 26 | |
| α-helix | 62-72 | 11 | |
| α-helix | 79-87 | 9 | |
| α-helix | 103-108 | 6 | |
| β-strand | 112 | 1 | 11 |
| β-strand | 115 | 1 | 11 |
| α-helix | 119-121 | 3 | |
| α-helix | 126-128 | 3 | |
| α-helix | 132-134 | 3 | |
| α-helix | 143-153 | 11 | |
| α-helix | 160-167 | 8 | |
| α-helix | 182-199 | 18 | |
| α-helix | 206-219 | 14 | |
| α-helix | 221-223 | 3 | |
| β-strand | 284 | 1 | 12 |
| β-strand | 289 | 1 | 12 |
| α-helix | 294-300 | 7 | |
| α-helix | 304-307 | 4 | |
| α-helix | 318-333 | 16 | |
| α-helix | 335-350 | 16 | |
| α-helix | 353-361 | 9 | |
| α-helix | 394-400 | 7 | |
| β-strand | 406-408 | 3 | 13 |
| β-strand | 414-416 | 3 | 13 |
| α-helix | 419-426 | 8 | |
| α-helix | 429-438 | 10 | |
| α-helix | 452-462 | 11 | |
| α-helix | 489-498 | 10 | |
Chain 9: 2 helices, 5 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 22-24 | 3 | |
| β-strand | 28-33 | 6 | 7 |
| β-strand | 37-46 | 10 | 7 |
| β-strand | 52-63 | 12 | 7 |
| β-strand | 76-87 | 12 | 7 |
| α-helix | 89-91 | 3 | |
| β-strand | 92-96 | 5 | 7 |
Chain a: 1 helix, 5 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 27-37 | 11 | |
| β-strand | 42-46 | 5 | 6 |
| β-strand | 51-59 | 9 | 6 |
| β-strand | 65-73 | 9 | 6 |
| β-strand | 93-101 | 9 | 6 |
| β-strand | 106-110 | 5 | 6 |
Chain A: 91 helices, 57 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 65-69 | 5 | |
| α-helix | 85-94 | 10 | |
| α-helix | 98-102 | 5 | |
| α-helix | 109-111 | 3 | |
| β-strand | 117-120 | 4 | 114 |
| β-strand | 127-128 | 2 | 114 |
| α-helix | 131-133 | 3 | |
| α-helix | 137-157 | 21 | |
| α-helix | 234-243 | 10 | |
| α-helix | 260-269 | 10 | |
| α-helix | 310-315 | 6 | |
| α-helix | 317-320 | 4 | |
| α-helix | 370-371 | 2 | |
| α-helix | 374-378 | 5 | |
| α-helix | 399-403 | 5 | |
| α-helix | 404-406 | 3 | |
| α-helix | 428-431 | 4 | |
| α-helix | 441-459 | 19 | |
| α-helix | 476-478 | 3 | |
| β-strand | 483-486 | 4 | 114 |
| α-helix | 489-510 | 22 | |
| β-strand | 516-517 | 2 | 115 |
| β-strand | 525-526 | 2 | 115 |
| α-helix | 535-537 | 3 | |
| α-helix | 544-565 | 22 | |
| α-helix | 573-586 | 14 | |
| α-helix | 591-594 | 4 | |
| α-helix | 598-616 | 19 | |
| α-helix | 633-657 | 25 | |
| α-helix | 678-695 | 18 | |
| α-helix | 708-721 | 14 | |
| α-helix | 733-759 | 27 | |
| α-helix | 771-796 | 26 | |
| α-helix | 803-820 | 18 | |
| β-strand | 825 | 1 | 116 |
| α-helix | 835-850 | 16 | |
| α-helix | 860-872 | 13 | |
| α-helix | 874-887 | 14 | |
| α-helix | 893-894 | 2 | |
| β-strand | 895-899 | 5 | 117 |
| β-strand | 906-910 | 5 | 117 |
| α-helix | 913-933 | 21 | |
| β-strand | 940 | 1 | 118 |
| α-helix | 947-960 | 14 | |
| β-strand | 973-980 | 8 | 118 |
| α-helix | 990-1000 | 11 | |
| β-strand | 1001 | 1 | 116 |
| α-helix | 1003-1012 | 10 | |
| β-strand | 1018 | 1 | 117 |
| α-helix | 1038-1053 | 16 | |
| α-helix | 1056-1062 | 7 | |
| α-helix | 1077-1082 | 6 | |
| β-strand | 1085-1090 | 6 | 118 |
| β-strand | 1094-1101 | 8 | 118 |
| α-helix | 1103-1116 | 14 | |
| α-helix | 1144-1156 | 13 | |
| β-strand | 1174-1178 | 5 | 118 |
| β-strand | 1185-1188 | 4 | 119 |
| β-strand | 1193-1198 | 6 | 119 |
| β-strand | 1216-1217 | 2 | 119 |
| β-strand | 1224-1231 | 8 | 119 |
| α-helix | 1234-1248 | 15 | |
| α-helix | 1256-1270 | 15 | |
| α-helix | 1282-1295 | 14 | |
| α-helix | 1314-1317 | 4 | |
| α-helix | 1334-1336 | 3 | |
| α-helix | 1337-1339 | 3 | |
| β-strand | 1341-1345 | 5 | 120 |
| β-strand | 1350-1354 | 5 | 120 |
| α-helix | 1368-1371 | 4 | |
| α-helix | 1375-1398 | 24 | |
| α-helix | 1405-1408 | 4 | |
| α-helix | 1409-1411 | 3 | |
| α-helix | 1427-1430 | 4 | |
| α-helix | 1436-1441 | 6 | |
| α-helix | 1442-1445 | 4 | |
| α-helix | 1468-1477 | 10 | |
| α-helix | 1480-1485 | 6 | |
| α-helix | 1529-1537 | 9 | |
| α-helix | 1539-1542 | 4 | |
| β-strand | 1553-1554 | 2 | 121 |
| β-strand | 1561-1562 | 2 | 121 |
| α-helix | 1567-1576 | 10 | |
| α-helix | 1581-1599 | 19 | |
| α-helix | 1602-1604 | 3 | |
| β-strand | 1606-1608 | 3 | 122 |
| β-strand | 1611 | 1 | 122 |
| β-strand | 1629-1638 | 10 | 122 |
| β-strand | 1642-1644 | 3 | 122 |
| β-strand | 1656-1662 | 7 | 122 |
| β-strand | 1665-1666 | 2 | 123 |
| α-helix | 1671-1673 | 3 | |
| α-helix | 1676-1689 | 14 | |
| β-strand | 1700-1701 | 2 | 122 |
| β-strand | 1704-1706 | 3 | 123 |
| β-strand | 1711-1713 | 3 | 123 |
| β-strand | 1715-1717 | 3 | 122 |
| α-helix | 1718-1719 | 2 | |
| α-helix | 1723-1734 | 12 | |
| α-helix | 1738-1751 | 14 | |
| β-strand | 1779-1781 | 3 | 124 |
| β-strand | 1788-1791 | 4 | 125 |
| β-strand | 1799-1802 | 4 | 125 |
| β-strand | 1805-1810 | 6 | 124 |
| β-strand | 1816-1822 | 7 | 124 |
| α-helix | 1824-1826 | 3 | |
| α-helix | 1833-1850 | 18 | |
| α-helix | 1854-1856 | 3 | |
| β-strand | 1861-1863 | 3 | 124 |
| α-helix | 1870-1875 | 6 | |
| β-strand | 1884-1885 | 2 | 124 |
| α-helix | 1893-1897 | 5 | |
| α-helix | 1900-1907 | 8 | |
| β-strand | 1914-1918 | 5 | 124 |
| α-helix | 1921-1925 | 5 | |
| α-helix | 1929-1945 | 17 | |
| α-helix | 1947-1953 | 7 | |
| α-helix | 1969-1970 | 2 | |
| α-helix | 1973-1995 | 23 | |
| α-helix | 2004-2010 | 7 | |
| α-helix | 2072-2081 | 10 | |
| α-helix | 2086-2088 | 3 | |
| β-strand | 2090-2091 | 2 | 126 |
| β-strand | 2103-2107 | 5 | 126 |
| α-helix | 2108-2117 | 10 | |
| α-helix | 2123-2124 | 2 | |
| β-strand | 2125-2131 | 7 | 126 |
| α-helix | 2132-2133 | 2 | |
| β-strand | 2139-2146 | 8 | 126 |
| β-strand | 2150 | 1 | 127 |
| β-strand | 2151-2152 | 2 | 128 |
| β-strand | 2157-2158 | 2 | 128 |
| α-helix | 2162-2164 | 3 | |
| β-strand | 2173-2181 | 9 | 126 |
| α-helix | 2190-2202 | 13 | |
| β-strand | 2212-2217 | 6 | 126 |
| β-strand | 2223-2228 | 6 | 126 |
| α-helix | 2232-2240 | 9 | |
| α-helix | 2253-2255 | 3 | |
| β-strand | 2258 | 1 | 126 |
| β-strand | 2260-2264 | 5 | 126 |
| β-strand | 2270-2271 | 2 | 126 |
| β-strand | 2273-2274 | 2 | 129 |
| β-strand | 2280 | 1 | 127 |
| β-strand | 2296-2297 | 2 | 129 |
| α-helix | 2300-2303 | 4 | |
| α-helix | 2311-2314 | 4 | |
| α-helix | 2321-2323 | 3 | |
Chain A1: 7 helices, 9 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 8-10 | 3 | |
| α-helix | 13-15 | 3 | |
| α-helix | 29-36 | 8 | |
| β-strand | 41-45 | 5 | 76 |
| α-helix | 53-60 | 8 | |
| α-helix | 61-63 | 3 | |
| β-strand | 66-73 | 8 | 76 |
| β-strand | 80-88 | 9 | 76 |
| α-helix | 91-100 | 10 | |
| β-strand | 105-106 | 2 | 77 |
| β-strand | 109-110 | 2 | 77 |
| β-strand | 112-115 | 4 | 76 |
| β-strand | 125 | 1 | 76 |
| α-helix | 135-138 | 4 | |
| β-strand | 143 | 1 | 78 |
| β-strand | 148 | 1 | 78 |
Chain A2: 1 helix, 5 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 14-18 | 5 | |
| β-strand | 22-27 | 6 | 7 |
| β-strand | 32-40 | 9 | 7 |
| β-strand | 46-56 | 11 | 7 |
| β-strand | 64-76 | 13 | 7 |
| β-strand | 81-86 | 6 | 7 |
Chain A3: 3 helices, 5 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 6-8 | 3 | |
| β-strand | 12-17 | 6 | 7 |
| β-strand | 22-30 | 9 | 7 |
| α-helix | 35 | 1 | |
| β-strand | 36-43 | 8 | 7 |
| β-strand | 54-62 | 9 | 7 |
| α-helix | 64-66 | 3 | |
| β-strand | 67-72 | 6 | 7 |
46 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| Nuclear cap-binding protein subunit 1 | A5 | protein | 790 | Homo sapiens | Q09161 (AlphaFold model) |
| U6 snRNA-associated Sm-like protein LSm7 | A2 | protein | 103 | Homo sapiens | Q9UK45 (AlphaFold model) |
| Splicing factor 3B subunit 6 | z | protein | 125 | Homo sapiens | Q9Y3B4 (AlphaFold model) |
| Splicing factor 3A subunit 2 | F | protein | 464 | Homo sapiens | Q15428 (AlphaFold model) |
| U5 small nuclear ribonucleoprotein 40 kDa protein | D | protein | 357 | Homo sapiens | Q96DI7 |
| U2 small nuclear ribonucleoprotein A' | W | protein | 255 | Homo sapiens | P09661 |
| U2 small nuclear ribonucleoprotein B'' | B | protein | 225 | Homo sapiens | P08579 |
| U5 small nuclear ribonucleoprotein 200 kDa helicase | s | protein | 2136 | Homo sapiens | O75643 |
| Protein BUD31 homolog | Q | protein | 144 | Homo sapiens | P41223 |
| Nuclear cap-binding protein subunit 2 | A1 | protein | 156 | Homo sapiens | P52298 |
| U5 snRNA | 5 | RNA | 116 | Homo sapiens | |
| Cell division cycle 5-like protein | L | protein | 802 | Homo sapiens | Q99459 |
39 more molecules are not listed.
Sequence of entity 1 (A5), FASTA
>7ABG_1 Nuclear cap-binding protein subunit 1 (chains A5)
MSRRRHSDENDGGQPHKRRKTSDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEAD
LPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANN
YNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWV
GKELYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLK
KDRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPEG
PVMPGSHSVERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELF
QLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHH
LSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIVPPTFSALCPAN
PTCIYKYGDESSNSLPGHSVALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFN
PLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVMFEVWRNHPQM
IAVLVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLKIQKELE
EAKEKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVESAQSEQKNLFLVIFQRFIMI
LTEHLVRCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDPHILA
VFQQFCALQA
Sequence of entity 2 (A2), FASTA
>7ABG_2 U6 snRNA-associated Sm-like protein LSm7 (chains A2)
MADKEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDD
QYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA
Sequence of entity 3 (z), FASTA
>7ABG_3 Splicing factor 3B subunit 6 (chains z)
MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTA
YVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGIN
TDPPK
Sequence of entity 4 (F), FASTA
>7ABG_4 Splicing factor 3A subunit 2 (chains F)
MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL
TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVT
KQRDSEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIA
FKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKMEKPPAPPSLPAGPPGVKRPPPPLMNG
LPPRPPLPESLPPPPPGGLPLPPMPPTGPAPSGPPGPPQLPPPAPGVHPPAPVVHPPASG
VHPPAPGVHPPAPGVHPPAPGVHPPTSGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPP
APGVHPPPSAGVHPQAPGVHPAAPAVHPQAPGVHPPAPGMHPQAPGVHPQPPGVHPSAPG
VHPQPPGVHPSNPGVHPPTPMPPMLRPPLPSEGPGNIPPPPPTN
Sequence of entity 5 (D), FASTA
>7ABG_5 U5 small nuclear ribonucleoprotein 40 kDa protein (chains D)
MIEQQKRKGPELPLVPVKRQRHELLLGAGSGPGAGQQQATPGALLQAGPPRCSSLQAPIM
LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTD
GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD
IRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTG
LSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKI
AAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIIISASSDKRLYMGEIQ
Sequence of entity 6 (W), FASTA
>7ABG_6 U2 small nuclear ribonucleoprotein A' (chains W)
MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF
PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI
LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKT
FNPGAGLPTDKKKGGPSPGDVEAIKNAIANASTLAEVERLKGLLQSGQIPGRERRSGPTD
DGEEEMEEDTVTNGS
Sequence of entity 7 (B), FASTA
>7ABG_7 U2 small nuclear ribonucleoprotein B'' (chains B)
MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELG
SSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTT
NKKPGQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEV
RLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK
Sequence of entity 8 (s), FASTA
>7ABG_8 U5 small nuclear ribonucleoprotein 200 kDa helicase (chains s)
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAVVRCTL
SANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFL
YQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFTQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKT
LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY
IAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKG
GERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYED
VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM
LNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSL
SSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYIT
PMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK
QRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVI
VFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYL
HEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPI
RHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVE
SVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATG
AHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD
Sequence of entity 9 (Q), FASTA
>7ABG_9 Protein BUD31 homolog (chains Q)
MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI
FDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICR
VPKSKLEVGRIIECTHCGCRGCSG
Sequence of entity 10 (A1), FASTA
>7ABG_10 Nuclear cap-binding protein subunit 2 (chains A1)
MSGGLLKALRSDSYVELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELF
SKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFK
EGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQNQ
Sequence of entity 11 (5), FASTA
>7ABG_11 U5 snRNA (chains 5)
AUACUCUGGUUUCUCUUCAGAUCGCAUAAAUCUUUCGCCUUUUACUAAAGAUUUCCGUGG
AGAGGAACAACUCUGAGUCUUAACCCAAUUUUUUGAGCCUUGCCUUGGCAAGGCUA
Sequence of entity 12 (L), FASTA
>7ABG_12 Cell division cycle 5-like protein (chains L)
MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKK
TEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKAAQRDNEEETTDDP
RKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEAR
RLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFR
KLRQQDLDGELRSEKEGRDRKKDKQHLKRKKESDLPSAILQTSGVSEFTKKRSKLVLPAP
QISDAELQEVVKVGQASEIARQTAEESGITNSASSTLLSEYNVTNNSVALRTPRTPASQD
RILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPFRTPSNGA
EGLTPRSGTTPKPVINSTPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGL
LGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEMKRMHKA
VQKDLPRPSEVNETILRPLNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKG
KTVGFGTNNSEHITYLEHNPYEKFSKEELKKAQDVLVQEMEVVKQGMSHGELSSEAYNQV
WEECYSQVLYLPGQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKIL
LGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKHEDSAIPRRLECLKEDVQRQQER
EKELQHRYADLLLEKETLKSKF
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| IHP | Inositol hexakisphosphate | C6 H18 O24 P6 | 1 |
| GTP | Guanosine-5'-triphosphate | C10 H16 N5 O14 P3 | 1 |
| MG | Magnesium ion | Mg | 1 |
| GTG | 7-methyl-guanosine-5'-triphosphate-5'-guanosine | C21 H30 N10 O18 P3 | 1 |
Primary citation
Mechanism of protein-guided folding of the active site U2/U6 RNA during spliceosome activation. Townsend, C., Leelaram, M.N., Agafonov, D.E. et al. Science (2020) 370. DOI 10.1126/science.abc3753 · PubMed
Other PDB entries of the same protein (UniProt Q09161 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 1H2V 2.0 Å, Structure of the human nuclear cap-binding-complex (CBC)
- 1H6K 2.0 Å, nuclear Cap Binding Complex
- 1H2T 2.1 Å, Structure of the human nuclear cap-binding-complex (CBC) in complex with a cap analogue…
- 1N52 2.11 Å, Cap Binding Complex
- 3FEY 2.2 Å, Crystal structure of the CBC-importin alpha complex.
- 1H2U 2.4 Å, Structure of the human nuclear cap-binding-complex (CBC) in complex with a cap analogue…
- 9HFL 2.62 Å, Cryo-EM structure of the human snRNA export complex comprising CBC-PHAX-CRM1-RanGTP and…
- 6D0Y 2.68 Å, X-ray Crystal Structure of PGC-1beta C-terminus bound to the CBP80-CBP20 Cap Binding…
- 1N54 2.72 Å, Cap Binding Complex m7GpppG free
- 5OOB 2.79 Å, Complex of human nuclear cap-binding complex with M7GTP and nelf-E C-terminal peptide
- 5OO6 2.8 Å, Complex of human nuclear cap-binding complex with ARS2 C-terminal peptide
- 8BY6 3.19 Å, Structure of the human nuclear cap-binding complex bound to NCBP3(560-620) and…
Browse structure collections
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