7JQO: Kallikrein-4

Crystal structure of the R64D mutant of Bauhinia Bauhinioides Kallikrein Inhibitor complexed with Human Kallikrein 4. Determined by X-ray diffraction at 1.6 Å resolution. Released 21 Jul 2021.

Method
X-ray diffraction
Resolution
1.6 Å
Organisms
Homo sapiens, Bauhinia bauhinioides
Chains
2
Atoms
3,679
Mol. weight
43.58 kDa
Ligands
CD, 2PE
Released
21 Jul 2021

Explore 7JQO in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

7JQO contains 17 α-helices and 39 β-strands across 2 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain E: 12 helices, 19 β-strands

ElementResiduesLengthSheet
β-strand1711
β-strand20-2122
α-helix22-232
β-strand30-3563
β-strand38-48103
β-strand51-5443
α-helix56-583
β-strand63-6753
β-strand7214
α-helix74A-763
β-strand81-8553
β-strand87-9043
β-strand104-10743
α-helix111-1144
α-helix1221
β-strand12312
α-helix1241
α-helix128-1292
β-strand135-14062
α-helix150-1523
β-strand15414
β-strand156-16272
α-helix163-1642
α-helix165-1728
β-strand180-18342
β-strand18911
β-strand198-20142
β-strand208-21582
β-strand226-23052
α-helix231-2333
α-helix235-2439
Chain I: 5 helices, 20 β-strands
ElementResiduesLengthSheet
β-strand315
α-helix41
β-strand516
α-helix101
β-strand1116
α-helix121
β-strand1317
β-strand19-2358
β-strand30-3458
β-strand44-4858
β-strand5418
β-strand57-6048
β-strand6312
β-strand6717
β-strand6915
β-strand74-7858
β-strand87-9378
β-strand97-10378
β-strand112-11768
β-strand120-12568
α-helix127-1293
β-strand134-14188
β-strand144-14968
α-helix154-1563
β-strand157-16158

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
Kallikrein-4Eprotein223Homo sapiensQ9Y5K2 (AlphaFold model)
Kunitz-type inihibitorIprotein166Bauhinia bauhinioidesP83052 (AlphaFold model)
Sequence of entity 1 (E), FASTA
>7JQO_1 Kallikrein-4 (chains E)
IINGEDCSPHSQPWQAALVMENELFCSGVLVHPQWVLSAAHCFQNSYTIGLGLHSLEADQ
EPGSQMVEASLSVRHPEYNRPLLANDLMLIKLDESVSESDTIRSISIASQCPTAGNSCLV
SGWGLLANGRMPTVLQCVNVSVVSEEVCSKLYDPLYHPSMFCAGGGQDQKDSCNGDSGGP
LICNGYLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIEKTVQA
Sequence of entity 2 (I), FASTA
>7JQO_2 Kunitz-type inihibitor (chains I)
GSSVVVDTNGQPVSNGADAYYLVPVSHGHAGLALAKIGNEAEPRAVVLDPHHRPGLPVRF
ESPLDINIIKESYFLNIKFGPSSSDSGVWDVIQQDPIGLAVKVTDTKSLLGPFKVEKEGE
GYKIVYYPERGQTGLDIGLVHRNDKYYLAVKDGEPCVFKIRKATDE

Ligands and cofactors

IDNameFormulaCopies
CDCadmium ionCd1
2PENonaethylene glycolC18 H38 O103

Water and common crystallization additives (CL, SO4) are not listed.

Primary citation

Structural studies of complexes of kallikrein 4 with wild-type and mutated forms of the Kunitz-type inhibitor BbKI. Li, M., Srp, J., Mares, M. et al. Acta Crystallogr D Struct Biol (2021) 77:1084-1098. DOI 10.1107/S2059798321006483 · PubMed

Other PDB entries of the same protein (UniProt Q9Y5K2 (AlphaFold model), which also has an AlphaFold model), best resolution first:

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