7OYD: Rabbit 80S ribosome with zebrafish Dap1b
Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b. Determined by electron microscopy at 2.3 Å resolution. Released 20 Jul 2022.
- Method
- Electron microscopy
- Resolution
- 2.3 Å
- Organisms
- Oryctolagus cuniculus, Danio rerio
- Chains
- 83
- Atoms
- 213,014
- Mol. weight
- 3579.11 kDa
- Ligands
- ZN, MG
- Released
- 20 Jul 2022
Explore 7OYD in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
7OYD contains 584 α-helices and 608 β-strands across 78 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain a: 7 helices, 7 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 3-5 | 3 | |
| α-helix | 7-9 | 3 | |
| α-helix | 42-48 | 7 | |
| β-strand | 72-74 | 3 | 91 |
| α-helix | 75-81 | 7 | |
| α-helix | 84-92 | 9 | |
| β-strand | 97-98 | 2 | 70 |
| β-strand | 100-102 | 3 | 92 |
| α-helix | 104-106 | 3 | |
| β-strand | 110-112 | 3 | 91 |
| β-strand | 122-126 | 5 | 92 |
| β-strand | 128-129 | 2 | 91 |
| α-helix | 131-139 | 9 | |
| β-strand | 142-146 | 5 | 92 |
Chain A: 10 helices, 17 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 6-9 | 4 | |
| α-helix | 30-32 | 3 | |
| α-helix | 34-38 | 5 | |
| β-strand | 40-49 | 10 | 48 |
| β-strand | 58-64 | 7 | 48 |
| β-strand | 71-77 | 7 | 48 |
| α-helix | 78 | 1 | |
| β-strand | 79 | 1 | 49 |
| β-strand | 83 | 1 | 50 |
| β-strand | 87-91 | 5 | 48 |
| β-strand | 101-103 | 3 | 48 |
| α-helix | 104-106 | 3 | |
| β-strand | 112-114 | 3 | 48 |
| β-strand | 116 | 1 | 51 |
| β-strand | 126 | 1 | 51 |
| β-strand | 134-140 | 7 | 48 |
| α-helix | 142-144 | 3 | |
| β-strand | 145-149 | 5 | 48 |
| β-strand | 155-159 | 5 | 48 |
| β-strand | 163-166 | 4 | 48 |
| β-strand | 169 | 1 | 49 |
| α-helix | 174-176 | 3 | |
| α-helix | 182-190 | 9 | |
| α-helix | 198-200 | 3 | |
| α-helix | 201-203 | 3 | |
| β-strand | 224-225 | 2 | 52 |
| β-strand | 237-238 | 2 | 52 |
Chain Aa: 4 helices, 5 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 20-22 | 3 | 61 |
| β-strand | 29-31 | 3 | 61 |
| β-strand | 36-43 | 8 | 62 |
| α-helix | 49-51 | 3 | |
| β-strand | 57 | 1 | 63 |
| α-helix | 62-65 | 4 | |
| β-strand | 66-73 | 8 | 62 |
| α-helix | 75-80 | 6 | |
| α-helix | 96-99 | 4 | |
Chain AA: 10 helices, 8 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 12-21 | 10 | |
| β-strand | 25 | 1 | 54 |
| α-helix | 35-37 | 3 | |
| β-strand | 38-41 | 4 | 54 |
| β-strand | 47-49 | 3 | 54 |
| α-helix | 50 | 1 | |
| α-helix | 51-66 | 16 | |
| β-strand | 74-78 | 5 | 55 |
| α-helix | 86-94 | 9 | |
| β-strand | 97-100 | 4 | 55 |
| β-strand | 121-124 | 4 | 55 |
| α-helix | 131-136 | 6 | |
| β-strand | 144-148 | 5 | 55 |
| β-strand | 159-162 | 4 | 55 |
| α-helix | 168-184 | 17 | |
| α-helix | 194-195 | 2 | |
| α-helix | 203-206 | 4 | |
| α-helix | 209-217 | 9 | |
Chain b: 7 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 12-16 | 5 | |
| α-helix | 22-24 | 3 | |
| α-helix | 37-48 | 12 | |
| α-helix | 50-53 | 4 | |
| α-helix | 54-68 | 15 | |
| α-helix | 91-99 | 9 | |
| α-helix | 106-116 | 11 | |
Chain B: 18 helices, 22 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 9-10 | 2 | |
| α-helix | 14-16 | 3 | |
| α-helix | 27-28 | 2 | |
| α-helix | 32-35 | 4 | |
| α-helix | 40-41 | 2 | |
| β-strand | 42-43 | 2 | 73 |
| β-strand | 45-54 | 10 | 74 |
| β-strand | 56-59 | 4 | 75 |
| β-strand | 71-73 | 3 | 75 |
| β-strand | 76-80 | 5 | 74 |
| β-strand | 84-95 | 12 | 76 |
| β-strand | 98-106 | 9 | 76 |
| α-helix | 112-115 | 4 | |
| α-helix | 116-118 | 3 | |
| α-helix | 134-138 | 5 | |
| α-helix | 140-156 | 17 | |
| β-strand | 159-165 | 7 | 76 |
| α-helix | 168-170 | 3 | |
| α-helix | 178-179 | 2 | |
| β-strand | 180-184 | 5 | 76 |
| β-strand | 185-186 | 2 | 73 |
| α-helix | 190-197 | 8 | |
| β-strand | 204-205 | 2 | 76 |
| β-strand | 216-222 | 7 | 74 |
| α-helix | 223-224 | 2 | |
| β-strand | 225-229 | 5 | 77 |
| α-helix | 231-234 | 4 | |
| α-helix | 237-241 | 5 | |
| β-strand | 270-273 | 4 | 77 |
| β-strand | 276-288 | 13 | 74 |
| β-strand | 292-294 | 3 | 78 |
| β-strand | 297-299 | 3 | 78 |
| α-helix | 316 | 1 | |
| β-strand | 320 | 1 | 79 |
| β-strand | 324 | 1 | 79 |
| β-strand | 330-334 | 5 | 74 |
| β-strand | 344-349 | 6 | 74 |
| α-helix | 361-363 | 3 | |
| β-strand | 365-368 | 4 | 75 |
| α-helix | 382-389 | 8 | |
Chain Bb: 4 helices, 6 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 12-15 | 4 | |
| β-strand | 32-36 | 5 | 88 |
| β-strand | 44-47 | 4 | 88 |
| β-strand | 54-55 | 2 | 89 |
| α-helix | 57-59 | 3 | |
| β-strand | 62-65 | 4 | 89 |
| α-helix | 71 | 1 | |
| β-strand | 72-73 | 2 | 89 |
| α-helix | 74 | 1 | |
| β-strand | 78-81 | 4 | 88 |
Chain BB: 8 helices, 8 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 24-26 | 3 | |
| β-strand | 28-34 | 7 | 83 |
| β-strand | 43-50 | 8 | 83 |
| α-helix | 58-60 | 3 | |
| β-strand | 66-70 | 5 | 83 |
| α-helix | 71-73 | 3 | |
| β-strand | 82-91 | 10 | 83 |
| β-strand | 96-105 | 10 | 83 |
| α-helix | 107-113 | 7 | |
| β-strand | 120-128 | 9 | 83 |
| β-strand | 134-143 | 10 | 83 |
| α-helix | 158-174 | 17 | |
| α-helix | 181-188 | 8 | |
| α-helix | 192-199 | 8 | |
| β-strand | 207-219 | 13 | 83 |
| α-helix | 226-228 | 3 | |
70 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| Ribosomal protein uL1 | x | protein | 217 | Oryctolagus cuniculus | G1SKZ8 (AlphaFold model) |
| 28S rRNA | 5 | RNA | 3740 | Oryctolagus cuniculus | |
| 5.8S rRNA | 8 | RNA | 156 | Oryctolagus cuniculus | |
| 18S rRNA | 9 | RNA | 1786 | Oryctolagus cuniculus | |
| 60S ribosomal protein L8 | A | protein | 257 | Oryctolagus cuniculus | |
| 40S ribosomal protein SA | AA | protein | 295 | Oryctolagus cuniculus | G1TLT8 (AlphaFold model) |
| 40S ribosomal protein S26-like | Aa | protein | 115 | Oryctolagus cuniculus | |
| Ribosomal protein L3 | B | protein | 403 | Oryctolagus cuniculus | G1TL06 (AlphaFold model) |
| 40S ribosomal protein S3a | BB | protein | 264 | Oryctolagus cuniculus | G1SS70 (AlphaFold model) |
| 40S ribosomal protein S27 | Bb | protein | 84 | Oryctolagus cuniculus | G1TZ76 |
| 60S ribosomal protein L4 | C | protein | 413 | Oryctolagus cuniculus | G1SVW5 |
| 40S ribosomal protein S2 | CC | protein | 293 | Oryctolagus cuniculus | |
71 more molecules are not listed.
Sequence of entity 1 (x), FASTA
>7OYD_1 Ribosomal protein uL1 (chains x)
MGDILSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPR
PKFSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQI
PRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELV
YNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY
Sequence of entity 2 (5), FASTA
>7OYD_2 28S rRNA (chains 5)
CGCGACCUCAGAUCAGACGUGGCGACCCGCUGAAUUUAAGCAUAUUAGUCAGCGGAGGAA
AAGAAACUAACCAGGAUUCCCUCAGUAACGGCGAGUGAACAGGGAAGAGCCCAGCGCCGA
AUCCCCGCCCCGCGGCGGGGCGCGGGAAAUGUGGCGUACGGAAGACCCACUCCCCGGCGC
CGGGGGGCCCAAGUCCUUCUGAUCGAGGCCCAGCCCGUGGACGGUGUGAGGCCGGUAGCG
GCCCCCGGCGCGCCGGGCCCGGGUCUUCCCGGAGUCGGGUUGCUUGGGAAUGCAGCCCAA
AGCGGGUGGUAAACUCCAUCUAAGGCUAAAUACCGGCACGAGACCGAUAGUCAACAAGUA
CCGUAAGGGAAAGUUGAAAAGAACUUUGAAGAGAGAGUUCAAGAGGGCGUGAAACCGUUA
AGAGGUAAACGGGUGGGGUCCGCGCAGUCCGCCCGGAGGAUUCAACCCGGCGGCGGGGUC
CGGCCGUGCCGGCGGGGCGGAUCUCCCGCUCCCGUCGGCGGGGGACCGCCCCCCGGCCGG
CGACCGGCCGCCGCCGGGCGCAUUUCCACCGCGGCGGUGCGCCGCGACCGGCUCCGGGAC
GGCUGGGAAGGCCCCGGCGGGGAAGGUGGCCCGGGGGCCCCGGGUGUUACAGCCCGCCCC
CGGCAGCAGCGACUCGCCGAAUCCCGGGGCCGAGGGAGCGAGACCCGUGCCGCCGCGCUC
UCCCCCCUGGGGGGGCCGGGCCACCCCUCCCACGGCGCGACCGCUGGGGCGGACUGUCCA
GUGCGCCCCGGGCGGGUCGCGCCGUCGGGCCCGGGGGGCCACGCGUCCCCCGCGAGCGCA
CGGGGUCGGCGGCGAUGUCGGCUACCCACCCGACCCGUCUUGAAACACGGACCAAGGAGU
CUAACACGUGCGCGAGUCGGGGGCUACGAAAGCCGCCGUGGCGCAAUGAAGGUGAAGGCC
GGCGGCGCGCCGCCGGCCGAGGUGGGAUCCCGAGGCCUCUCCAGUCCGCCGAGGGCGCAC
CACCGGCCCGUCUCGCCCGCCGCGCCGGGGAGGUGGAGCACGAGCGCACGUGUUAGGACC
CGAAAGAUGGUGAACUAUGCCUGGGCAGGGCGAAGCCAGAGGAAACUCUGGUGGAGGUCC
GUAGCGGUCCUGACGUGCGAAUCGGUCGUCCGACCUGGGUAUAGGGGCGAAAGACUAAUC
GAACCAUCUAGUAGCUGGUUCCCUCCAAAGUUUCCCUCAGGAUAGCUGGCGCUCUCCGCA
GUUUUAUCCGGUAAAGCGAAUGAUUAGAGGUCUUGGGGCCGAAACGAUCUCAACCUAUUC
UCAAACUUUAAAUGGGUAAGAAGCCCGGCUCGCUGGUGUGGAGCCGGGCGUGGAAUGCGA
GUGCCUAGUGGGCCACUUUUGGUAAGCAGAACUGGCGCUGCGGGAUGAACCGAACGCCGG
GUUAAGGCGCCCGAUGCCGACGCUCAUCAGACCCCAGAAAAGGUGUUGGUUGAUAUAGAC
AGCAGGAUGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCACCUGCC
GAAUCAACUAGCCCUGAAAAUGGAUGGCGCUGGAGCGUCGGGCCCAUACCCGGCCGUCGC
UGGCAGUCGGCAGAGCGAGAAAGAGAGUGGCGCGGACGCUACGCCGCGACGAGUAGGAGG
GCCGCUGCGGUGAGCCUUGAAGCCUAGGGCGCGGGCCCGGGUGGAGCCGCCGCAGGUGCA
GAUCUUGGUGGUAGUAGCAAAUAUUCAAACGAGAACUUUGAAGGCCGAAGUGGAGAAGGG
UUCCAUGUGAACAGCAGUUGAACAUGGGUCAGUCGGUCCUGAGAGAUGGGCGAGCGCCGU
UCCGAAGGGACGGGCGAUGGCCUCCGUUGCCCUCAGCCGAUCGAAAGGGAGUCGGGUUCA
GAUCCCCGAAUCCGGAGUGGCGGAGAUGGGCGCCGCGAGGCGUCCAGUGCGGUAACGCGA
CCGAUCCCGGAGAAGCCGGCGGGAGCCCCGGGGAGAGUUCUCUUUUCUUUGUGAAGGGCA
GGGCGCCCUGGAAUGGGUUCGCCCCGAGAGAGGGGCCCGUGCCUUGGAAAGCGUCGCGGU
UCCGGCGGCGUCCGGUGAGCUCUCGCUGGCCCUUGAAAAUCCGGGGGAGAGGGUGUAAAU
CUCGCGCCGGGCCGUACCCAUAUCCGCAGCAGGUCUCCAAGGUGAACAGCCUCUGGCAUG
UUGGAACAAUGUAGGUAAGGGAAGUCGGCAAGCCGGAUCCGUAACUUCGGGAUAAGGAUU
GGCUCUAAGGGCUGGCAGCCGACUUAGAACUGGUGCGGACCAGGGGAAUCCGACUGUUUA
AUUAAAACAAAGCAUCGCGAAGGCCCGCGGCGGGUGUUGACGCGAUGUGAUUUCUGCCCA
GUGCUCUGAAUGUCAAAGUGAAGAAAUUCAAUGAAGCGCGGGUAAACGGCGGGAGUAACU
AUGACUCUCUUAAGGUAGCCAAAUGCCUCGUCAUCUAAUUAGUGACGCGCAUGAAUGGAU
GAACGAGAUUCCCACUGUCCCUACCUACUAUCCAGCGAAACCACAGCCAAGGGAACGGGC
UUGGCGGAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUUGACUCUAGUCUGGCACGGUGA
AGAGACAUGAGAAGUGUAGAAUAAGUGGGAGGCCCCCGCGCCCUCCCGCCCCCGCGAGGG
GCGGGGCGGGGGUGCCGGCCUUGCGGGCCGCCGGUGAAAUACCACUACUCUGAUCGUUUU
UUCACUGACCCGGUGAGGCGGGGGGGCGAGCCCCGAGGGGCUCUCGCUUCUGGCGCCAAG
CGCCCGGCCGGCCGGGCGCAUGACCCGCUCCGGGGACAGUGCCAGGUGGGGAGUUUGACU
GGGGCGGUACACCUGUCAAACGGUAACGCAGGUGUCCUAAGGCGAGCUCAGGGAGGACAG
AAACCUCCCGUGGAGCAGAAGGGCAAAAGCUCGCUUGAUCUUGAUUUUCAGUACGAAUAC
AGACCGUGAAAGCGGGGCCUCACGAUCCUUCUGACCUUUUGGGUUUUAAGCAGGAGGUGU
CAGAAAAGUUACCACAGGGAUAACUGGCUUGUGGCGGCCAAGCGUUCAUAGCGACGUCGC
UUUUUGAUCCUUCGAUGUCGGCUCUUCCUAUCAUUGUGAAGCAGAAUUCACCAAGCGUUG
GAUUGUUCACCCACUAAUAGGGAACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAG
UUUUACCCUACUGAUGAUGUGUUGUUGCCAUGGUAAUCCUGCUCAGUACGAGAGGAACCG
CAGGUUCAGACAUUUGGUGUAUGUGCUUGGCUGAGGAGCCAAUGGGGCGAAGCUACCAUC
UGUGGGAUUAUGACUGAACGCCUCUAAGUCAGAAUCCCGCCCAGGCGGAACGAUAGCAGC
CGGAGCCUCGGUUGGCCUCGGAUAGCCGGUCCCCCGCCGUCCCCGCCGGCGGCCCGCGUC
GUGCGUCCGCCUCGGCGGCGAGCGGCCCGCCCCCCGCCGCGCGUUGGGACCGGGUCCGGU
GCGGAGAGCCCUUCGUCCCGGGAAACGGGGCGUGGCCGGAAAGGGGGCCGCCCUCUCGCC
CGUCACGCACCGCACGUUCGUGGGGAACCUGGCGCUAAACCAUUCGUAGACGACCUGCUU
CUGGGUCGGGGUUUCGUACGUAGCAGAGCAGCUCCCUCGCUGCGAUCUAUUGAAAGUCAG
CCCUCGACACAAGGGUUUGU
Sequence of entity 3 (8), FASTA
>7OYD_3 5.8S rRNA (chains 8)
CGACUCUUAGCGGUGGAUCACUCGGCUCGUGCGUCGAUGAAGAACGCAGCUAGCUGCGAG
AAUUAAUGUGAAUUGCAGGACACAUUGAUCAUCGACACUUCGAACGCACUUGCGGCCCCG
GGUUCCUCCCGGGGCUACGCCUGUCUGAGCGUCGCU
Sequence of entity 4 (9), FASTA
>7OYD_4 18S rRNA (chains 9)
UACCUGGUUGAUCCUGCCAGUAGCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUCUA
AGUACGCACGGCCGGUACAGUGAAACUGCGAAUGGCUCAUUAAAUCAGUUAUGGUUCCUU
UGGUCGCUCGCUCCUCUCCUACUUGGAUAACUGUGGUAAUUCUAGAGCUAAUACAUGCCG
ACGGGCGCUGACCCCCUUCGCGGGGGGGAUGCGUGCAUUUAUCAGAUCAAAACCAACCCG
GUCAGCCUCCCCGCCGGCCGGGGGGGUGGGGCGGCGGCUUUGGUGACUCUAGAUAACCUC
GGGCCGAUCGCACGCCCUCCGUGGCGGCGACGACCCAUUCGAACGUCUGCCCUAUCAACU
UUCGAUGGUAGUCGCCGUGCCUACCAUGGUGACCACGGGUGACGGGGAAUCAGGGUUCGA
UUCCGGAGAGGGAGCCUGAGAAACGGCUACCACAUCCAAGGAAGGCAGCAGGCGCGCAAA
UUACCCACUCCCGACCCGGGGAGGUAGUGACGAAAAAUAACAAUACAGGACUCUUUCGAG
GCCCUGUAAUUGGAAUGAGUCCACUUUAAAUCCUUUAACGAGGAUCCAUUGGAGGGCAAG
UCUGGUGCCAGCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAUAUUAAAGUUGCUGCAGU
UAAAAAGCUCGUAGUUGGAUCUUGGGAGCGGCCGUCCCCUGCUCGGCGCCGGCCCGAAGC
GUUUACUUUGAAAAAAUUAGAGUGUUCAAAGCAGGCCGCCUGGAUACCGCAGCUAGGAAU
AAUGGAAUAGGACCGCGGUUCUAUUUUGUUGGUUUUCGGAACUGAGGCCAUGAUUAAGAG
GGACGGCCGGGGGCAUUCGUAUUGCGCCGCUAGAGGUGAAAUUCUUGGACCGGCGCAAGA
CGGACCAGAGCGAAAGCAUUUGCCAAGAAUGUUUUCAUUAAUCAAGAACGAAAGUCGGAG
GUUCGAAGACGAUCAGAUACCGUCGUAGUUCCGACCAUAAACGAUGCCGACUGGCGAUGC
GGCGGCGUUAUUCCCAUGACCCGCCGGGCAGCUUCCGGGAAACCAAAGUCUUUGGGUUCC
GGGGGGAGUAUGGUUGCAAAGCUGAAACUUAAAGGAAUUGACGGAAGGGCACCACCAGGA
GUGGAGCCUGCGGCUUAAUUUGACXCAACACGGGAAACCUCACCCGGCCCGGACACGGAC
AGGAUUGACAGAUUGAUAGCUCUUUCUCGAUUCCGUGGGUGGUGGUGCAUGGCNGUUCUU
AGUUGGUGGAGCGAUUUGUCUGGUUAAUUCCGAUAACGAACGAGACUCUGGCAUGCUAAC
UAGUUACGCGACCCCCGAGCGGUCGGCGUCCCCCAACUUCUUAGAGGGACAAGUGGCGUU
CAGCCACCCGAGAUUGAGCAAUAACAGGUCUGUGAUGCCCUUAGAUGUCCGGGGCUGCAC
GCGCGCUACACUGACUGGCUCAGCGUGUGCCUACCCUACGCCGGCAGGCGCGGGUAACCC
GUUGAACCCCAUUCGUGAUGGGGAUCGGGGAUUGCAAUUAUUCCCCAUGAACGAGGAAUU
CCCAGUAAGUGCGGGUCAUAAGCUUGCGUUGAUUAAGUCCCUGCCCUUUGUACACACCGC
CCGUCGCUACUACCGAUUGGAUGGUUUAGUGAGGCCCUCGGAUCGGCCCCGCCGGGGUCG
GCCCACGGCCCUGGCGGAGCGCUGAGAAGACGGUCGAACUUGACUAUCUAGAGGAAGUAA
AAGUCGUAACAAGGUUUCNGUAGGUGAACCUGCGGAAGGAUCAUUA
Sequence of entity 5 (A), FASTA
>7OYD_5 60S ribosomal protein L8 (chains A)
MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK
VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKP
GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL
KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA
RRTGRLRGTKTVQEKEN
Sequence of entity 6 (AA), FASTA
>7OYD_6 40S ribosomal protein SA (chains AA)
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQTAFREPR
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA
TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGTTTEWS
Sequence of entity 7 (Aa), FASTA
>7OYD_7 40S ribosomal protein S26-like (chains Aa)
MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFD
AYVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPPPRFRPAGAAPRPPPKPM
Sequence of entity 8 (B), FASTA
>7OYD_8 Ribosomal protein L3 (chains B)
MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV
DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK
NWHKSKKKAFTKYCKKWQDDAGKRQLDKDFSSMKKYCQVIRVLAHTQMRLLPLRQKKAHL
MEIQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL
PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL
EKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKEEGA
Sequence of entity 9 (BB), FASTA
>7OYD_9 40S ribosomal protein S3a (chains BB)
MAVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASD
GLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTM
IEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTND
LKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGK
ATGDETGAKVERADGYEPPVQESV
Sequence of entity 10 (Bb), FASTA
>7OYD_10 40S ribosomal protein S27 (chains Bb)
MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCS
TVLCQPTGGKARLTEGCSFRRKQH
Sequence of entity 11 (C), FASTA
>7OYD_11 60S ribosomal protein L4 (chains C)
MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH
QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK
RYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDI
KKVYASQRMRAGKGKMRNRRRIQRRGPCVIYNEDNGIVKAFRNIPGITLLNVTKLNILKL
APGGHVGRFCIWTESAFRKLDDLYGTWRKAASLKSNYNLPMHKMLNTDLSRILKSPEIQR
ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLRVERAAAALAA
KSDPKEAPAKKKPVVGKKKKPVVGRKAAAAKKPAADKKAADKRAGPEDKKPAA
Sequence of entity 12 (CC), FASTA
>7OYD_12 40S ribosomal protein S2 (chains CC)
MADDAGAAGGPGGPGGPGMGGRGGFRGGFGSGVRGRGRGRGRGRGRGRGARGGKAEDKEW
LPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQ
RTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTV
PCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKAT
FDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPAVATT
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| ZN | Zinc ion | Zn | 7 |
| MG | Magnesium ion | Mg | 201 |
Primary citation
A molecular network of conserved factors keeps ribosomes dormant in the egg. Leesch, F., Lorenzo-Orts, L., Pribitzer, C. et al. Nature (2023) 613:712-720. DOI 10.1038/s41586-022-05623-y · PubMed
Other PDB entries of the same protein (UniProt G1SKZ8 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 7O7Y 2.2 Å, Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a…
- 11IQ 2.4 Å, Rabbit 80S with eEF2,eIF5A and SERBP1
- 7O7Z 2.4 Å, Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a…
- 9RHU 2.65 Å, Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A…
- 6SGC 2.8 Å, Rabbit 80S ribosome stalled on a poly(A) tail
- 7ZJW 2.8 Å, Rabbit 80S ribosome as it decodes the Sec-UGA codon
- 9QQA 2.8 Å, Ternary complex of translating ribosome, NAC and NMT1
- 11HE 2.86 Å, Rabbit 60S ribosomal subunit with eEF2 domain IV closed
- 11HV 2.9 Å, Rabbit 60S ribosomal subunit with eEF2 domain IV open
- 7O80 2.9 Å, Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the…
- 8P2K 2.9 Å, Ternary complex of translating ribosome, NAC and METAP1
- 6P5I 3.1 Å, Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus…
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