7PGM: HHIP-C

HHIP-C in complex with heparin. Determined by X-ray diffraction at 2.7 Å resolution. Released 15 Dec 2021.

Method: X-ray diffraction
Resolution: 2.7 Å
Organism: Homo sapiens
Chains: 3
Atoms: 10,309
Mol. weight: 159.84 kDa
Released: 15 Dec 2021

Explore 7PGM in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

7PGM contains 38 α-helices and 128 β-strands across 3 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 12 helices, 44 β-strands

Element	Residues	Length	Sheet
β-strand	217	1	1
β-strand	218-226	9	2
β-strand	229-233	5	2
β-strand	242-246	5	2
β-strand	250-254	5	2
α-helix	259	1
β-strand	260	1	2
α-helix	261	1
β-strand	266-267	2	2
β-strand	284-289	6	3
α-helix	293-296	4
β-strand	298-305	8	3
β-strand	317-326	10	3
β-strand	334-347	14	3
β-strand	355-359	5	4
α-helix	364	1
β-strand	365-369	5	4
α-helix	376-379	4
β-strand	391-395	5	4
β-strand	396	1	5
β-strand	407	1	5
β-strand	424-427	4	4
β-strand	432	1	6
β-strand	434	1	7
α-helix	435	1
β-strand	436-438	3	6
β-strand	449-454	6	6
β-strand	463-467	5	6
β-strand	473	1	4
β-strand	481-483	3	6
β-strand	491-496	6	7
β-strand	509-513	5	7
β-strand	518-523	6	7
β-strand	530-535	6	7
β-strand	537	1	1
β-strand	540	1	8
β-strand	543	1	8
β-strand	544	1	2
β-strand	550-556	7	2
β-strand	562-567	6	2
α-helix	569-573	5
β-strand	577-583	7	2
β-strand	588	1	9
α-helix	592-594	3
α-helix	607-611	5
β-strand	615-617	3	10
β-strand	623-625	3	10
α-helix	626	1
β-strand	629-630	2	11
β-strand	636-637	2	11
α-helix	642-643	2
β-strand	648-651	4	12
β-strand	654-656	3	12
α-helix	657-658	2
β-strand	661-662	2	13
β-strand	668-669	2	13

Chain B: 12 helices, 41 β-strands

Element	Residues	Length	Sheet
β-strand	217	1	14
β-strand	218-226	9	15
β-strand	229-233	5	15
β-strand	242-246	5	15
β-strand	250-254	5	15
α-helix	259	1
β-strand	260	1	15
α-helix	261	1
β-strand	266-267	2	15
β-strand	284-289	6	16
α-helix	293-296	4
β-strand	298-305	8	16
β-strand	317-326	10	16
β-strand	334-347	14	16
β-strand	354-359	6	17
α-helix	364	1
β-strand	365-369	5	17
α-helix	376-379	4
β-strand	391-395	5	17
β-strand	396	1	18
β-strand	407	1	18
β-strand	424-427	4	17
β-strand	432	1	19
β-strand	434	1	20
α-helix	435	1
β-strand	436-438	3	19
β-strand	449-454	6	19
β-strand	464-469	6	19
β-strand	491-496	6	20
β-strand	509-513	5	20
β-strand	518-523	6	20
β-strand	530-535	6	20
β-strand	537	1	14
β-strand	540	1	21
β-strand	543	1	21
β-strand	544	1	15
β-strand	550-556	7	15
β-strand	562-567	6	15
α-helix	569-573	5
β-strand	577-583	7	15
α-helix	592-594	3
α-helix	607-611	5
β-strand	615-617	3	22
β-strand	623-625	3	22
α-helix	626	1
β-strand	629	1	23
β-strand	637	1	23
α-helix	642-643	2
β-strand	648-651	4	24
β-strand	654-656	3	24
α-helix	657-658	2
β-strand	661-662	2	25
β-strand	668-669	2	25

Chain C: 14 helices, 43 β-strands

Element	Residues	Length	Sheet
β-strand	217	1	26
β-strand	218-226	9	27
β-strand	229-233	5	27
β-strand	242-246	5	27
β-strand	250-254	5	27
α-helix	259	1
β-strand	260	1	27
α-helix	261	1
β-strand	266-267	2	27
β-strand	284-289	6	28
α-helix	293-296	4
β-strand	298-305	8	28
β-strand	317-326	10	28
β-strand	334-347	14	28
β-strand	354-359	6	29
α-helix	364	1
β-strand	365-369	5	29
α-helix	375-379	5
β-strand	391-395	5	29
β-strand	396	1	30
β-strand	407	1	30
β-strand	424-427	4	29
β-strand	432	1	31
β-strand	434	1	32
α-helix	435	1
β-strand	436-438	3	31
β-strand	449-454	6	31
β-strand	464-468	5	31
β-strand	473	1	29
α-helix	489-490	2
β-strand	491-496	6	32
β-strand	509-513	5	32
β-strand	518-523	6	32
β-strand	530-535	6	32
β-strand	537	1	26
β-strand	540	1	33
β-strand	543	1	33
β-strand	544	1	27
β-strand	550-556	7	27
β-strand	562-567	6	27
α-helix	569-573	5
β-strand	577-583	7	27
β-strand	588	1	9
α-helix	592-594	3
α-helix	607-611	5
β-strand	615-617	3	34
α-helix	622	1
β-strand	623-625	3	34
α-helix	626	1
β-strand	629-630	2	35
β-strand	636-637	2	35
α-helix	642-643	2
β-strand	648-651	4	36
β-strand	654-656	3	36
α-helix	657-658	2
β-strand	661-662	2	37
β-strand	668-669	2	37

Molecules and chains

Molecule	Chains	Type	Length	Organism	UniProt
Hedgehog-interacting protein	A, B, C	protein	470	Homo sapiens	Q96QV1 (AlphaFold model)

Sequence of entity 1 (A, B, C), FASTA

>7PGM_1 Hedgehog-interacting protein (chains A, B, C)
ETGKHNCFCIQEVVSGLRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIH
KLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRK
NPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLSDFT
GSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLT
ILCSDSNGKNRSSARILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSY
VFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGFGEDELGEVYILSSSK
SMTQTHNGKLYKIVDPKRPLMPEECRATVQPAQTLTSECSRLCRNGYCTPTGKCCCSPGW
EGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQCEQVDGTKHHHHHH

Primary citation

Hedgehog-Interacting Protein is a multimodal antagonist of Hedgehog signalling. Griffiths, S.C., Schwab, R.A., El Omari, K. et al. Nat Commun (2021) 12:7171-7171. DOI 10.1038/s41467-021-27475-2 · PubMed

Other PDB entries of the same protein (UniProt Q96QV1 (AlphaFold model), which also has an AlphaFold model), best resolution first:

7PGN 2.4 Å, HHP-C in complex with glycosaminoglycan mimic SOS
2WG3 2.6 Å, Crystal structure of the complex between human hedgehog-interacting protein HIP and…
7PGL 2.63 Å, HHIP-N, the N-terminal domain of the Hedgehog-Interacting Protein (HHIP), apo-form
7PGK 2.75 Å, HHIP-N, the N-terminal domain of the Hedgehog-Interacting Protein (HHIP), in complex…
2WFT 2.8 Å, Crystal structure of the human HIP ectodomain
3HO3 2.9 Å, Crystal structure of Hedgehog-interacting protein (HHIP)
3HO5 3.01 Å, Crystal structure of Hedgehog-interacting protein (HHIP) and Sonic hedgehog (SHH) complex
3HO4 3.1 Å, Crystal structure of Hedgehog-interacting protein (HHIP)
2WG4 3.15 Å, Crystal structure of the complex between human hedgehog-interacting protein HIP and…
2WFX 3.2 Å, Crystal structure of the complex between human hedgehog-interacting protein HIP and…

Browse structure collections

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