7TMS: V-ATPase from Saccharomyces cerevisiae, State 2
V-ATPase from Saccharomyces cerevisiae, State 2. Determined by electron microscopy at 3.8 Å resolution. Released 13 Apr 2022.
- Method
- Electron microscopy
- Resolution
- 3.8 Å
- Organism
- Saccharomyces cerevisiae
- Chains
- 31
- Atoms
- 57,652
- Mol. weight
- 989.86 kDa
- Ligands
- ADP
- Released
- 13 Apr 2022
Explore 7TMS in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
7TMS contains 369 α-helices and 264 β-strands across 31 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain a: 37 helices, 14 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 14-21 | 8 | 69 |
| α-helix | 26-35 | 10 | |
| α-helix | 56-78 | 23 | |
| α-helix | 86-95 | 10 | |
| α-helix | 106-143 | 38 | |
| β-strand | 187-191 | 5 | 70 |
| α-helix | 193-195 | 3 | |
| α-helix | 196-206 | 11 | |
| β-strand | 213-217 | 5 | 70 |
| β-strand | 222-224 | 3 | 71 |
| β-strand | 229-231 | 3 | 71 |
| β-strand | 234-238 | 5 | 70 |
| α-helix | 243-255 | 13 | |
| β-strand | 260 | 1 | 70 |
| α-helix | 267-324 | 58 | |
| β-strand | 335-342 | 8 | 69 |
| α-helix | 343-345 | 3 | |
| α-helix | 346-360 | 15 | |
| β-strand | 367-370 | 4 | 69 |
| α-helix | 376-378 | 3 | |
| β-strand | 379 | 1 | 72 |
| α-helix | 388-397 | 10 | |
| α-helix | 399-401 | 3 | |
| α-helix | 408-423 | 16 | |
| α-helix | 426-441 | 16 | |
| α-helix | 443-447 | 5 | |
| α-helix | 456-459 | 4 | |
| α-helix | 462-479 | 18 | |
| β-strand | 482 | 1 | 73 |
| β-strand | 485 | 1 | 73 |
| α-helix | 486-487 | 2 | |
| β-strand | 506 | 1 | 74 |
| α-helix | 520-522 | 3 | |
| α-helix | 528-561 | 34 | |
| α-helix | 566-567 | 2 | |
| α-helix | 568-572 | 5 | |
| α-helix | 573-579 | 7 | |
| α-helix | 580-584 | 5 | |
| α-helix | 585-595 | 11 | |
| α-helix | 598-601 | 4 | |
| α-helix | 604-607 | 4 | |
| α-helix | 611-615 | 5 | |
| α-helix | 630-650 | 21 | |
| α-helix | 711-732 | 22 | |
| α-helix | 734-754 | 21 | |
| α-helix | 764-780 | 17 | |
| α-helix | 781-790 | 10 | |
| α-helix | 791-799 | 9 | |
| α-helix | 800-805 | 6 | |
| α-helix | 806-809 | 4 | |
| β-strand | 816 | 1 | 72 |
Chain A: 27 helices, 39 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 25-31 | 7 | 1 |
| β-strand | 34-38 | 5 | 1 |
| α-helix | 43 | 1 | |
| β-strand | 44 | 1 | 2 |
| β-strand | 48-51 | 4 | 1 |
| β-strand | 56-64 | 9 | 1 |
| β-strand | 67-72 | 6 | 1 |
| β-strand | 80 | 1 | 3 |
| β-strand | 85-87 | 3 | 1 |
| β-strand | 93-96 | 4 | 4 |
| β-strand | 104-105 | 2 | 5 |
| β-strand | 111 | 1 | 5 |
| α-helix | 112-119 | 8 | |
| β-strand | 123 | 1 | 6 |
| α-helix | 137-138 | 2 | |
| β-strand | 139-143 | 5 | 7 |
| β-strand | 151-152 | 2 | 8 |
| β-strand | 157-161 | 5 | 7 |
| β-strand | 170-173 | 4 | 7 |
| α-helix | 174-175 | 2 | |
| β-strand | 180-185 | 6 | 8 |
| β-strand | 189-191 | 3 | 7 |
| β-strand | 196-201 | 6 | 8 |
| β-strand | 206-210 | 5 | 8 |
| β-strand | 213-216 | 4 | 4 |
| α-helix | 220-222 | 3 | |
| β-strand | 223-226 | 4 | 9 |
| α-helix | 227-229 | 3 | |
| β-strand | 232 | 1 | 10 |
| α-helix | 238-242 | 5 | |
| β-strand | 247 | 1 | 10 |
| β-strand | 251-255 | 5 | 5 |
| α-helix | 262-272 | 11 | |
| β-strand | 277-285 | 9 | 5 |
| α-helix | 287-296 | 10 | |
| α-helix | 297-299 | 3 | |
| β-strand | 301-302 | 2 | 11 |
| β-strand | 309-310 | 2 | 11 |
| α-helix | 311-313 | 3 | |
| β-strand | 315-321 | 7 | 5 |
| α-helix | 326-344 | 19 | |
| β-strand | 349-354 | 6 | 5 |
| α-helix | 357-371 | 15 | |
| α-helix | 373-374 | 2 | |
| β-strand | 375-377 | 3 | 12 |
| β-strand | 380-381 | 2 | 12 |
| α-helix | 384-393 | 10 | |
| β-strand | 398-400 | 3 | 9 |
| β-strand | 407-408 | 2 | 9 |
| β-strand | 409-416 | 8 | 5 |
| α-helix | 426-434 | 9 | |
| β-strand | 437-438 | 2 | 5 |
| β-strand | 441 | 1 | 13 |
| α-helix | 443-447 | 5 | |
| β-strand | 454 | 1 | 13 |
| β-strand | 460-461 | 2 | 5 |
| α-helix | 468-474 | 7 | |
| α-helix | 478-502 | 25 | |
| α-helix | 504-506 | 3 | |
| α-helix | 509-521 | 13 | |
| α-helix | 522-526 | 5 | |
| α-helix | 540-562 | 23 | |
| α-helix | 567-573 | 7 | |
| α-helix | 575-584 | 10 | |
| α-helix | 589-591 | 3 | |
| α-helix | 593-614 | 22 | |
Chain b: 2 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 221-244 | 24 | |
| α-helix | 251-254 | 4 | |
Chain B: 23 helices, 32 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 26-28 | 3 | 1 |
| β-strand | 31-35 | 5 | 1 |
| β-strand | 38-41 | 4 | 1 |
| β-strand | 48 | 1 | 3 |
| β-strand | 52-56 | 5 | 1 |
| β-strand | 62-71 | 10 | 1 |
| β-strand | 74-79 | 6 | 1 |
| β-strand | 87 | 1 | 14 |
| β-strand | 92-95 | 4 | 1 |
| β-strand | 102-104 | 3 | 15 |
| α-helix | 106-108 | 3 | |
| β-strand | 112-113 | 2 | 16 |
| β-strand | 119 | 1 | 16 |
| β-strand | 130-132 | 3 | 15 |
| α-helix | 133 | 1 | |
| α-helix | 137-138 | 2 | |
| β-strand | 139 | 1 | 6 |
| α-helix | 140 | 1 | |
| β-strand | 144-145 | 2 | 16 |
| β-strand | 150-152 | 3 | 17 |
| α-helix | 156-159 | 4 | |
| β-strand | 164-165 | 2 | 17 |
| β-strand | 169 | 1 | 16 |
| β-strand | 172-174 | 3 | 16 |
| α-helix | 180-190 | 11 | |
| β-strand | 192-193 | 2 | 17 |
| β-strand | 208-214 | 7 | 16 |
| β-strand | 217 | 1 | 18 |
| α-helix | 219-231 | 13 | |
| α-helix | 234-237 | 4 | |
| β-strand | 238-241 | 4 | 16 |
| β-strand | 244 | 1 | 18 |
| α-helix | 249-265 | 17 | |
| α-helix | 266-270 | 5 | |
| β-strand | 273-279 | 7 | 16 |
| α-helix | 281-294 | 14 | |
| α-helix | 297-299 | 3 | |
| α-helix | 301-303 | 3 | |
| α-helix | 308-316 | 9 | |
| β-strand | 320-322 | 3 | 16 |
| β-strand | 328-336 | 9 | 16 |
| α-helix | 337 | 1 | |
| α-helix | 345-353 | 9 | |
| β-strand | 357 | 1 | 19 |
| β-strand | 358-359 | 2 | 16 |
| β-strand | 360 | 1 | 20 |
| α-helix | 362-366 | 5 | |
| β-strand | 373 | 1 | 20 |
| β-strand | 379 | 1 | 19 |
| α-helix | 383-385 | 3 | |
| α-helix | 396-417 | 22 | |
| α-helix | 427-438 | 12 | |
| α-helix | 439-444 | 6 | |
| α-helix | 454-465 | 12 | |
| α-helix | 478-484 | 7 | |
Chain c: 6 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 17-39 | 23 | |
| α-helix | 47-53 | 7 | |
| α-helix | 56-92 | 37 | |
| α-helix | 96-122 | 27 | |
| α-helix | 136-176 | 41 | |
| α-helix | 178-207 | 30 | |
Chain C: 25 helices, 40 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 25-31 | 7 | 1 |
| β-strand | 33-38 | 6 | 1 |
| β-strand | 44 | 1 | 14 |
| β-strand | 47-51 | 5 | 1 |
| β-strand | 56-63 | 8 | 1 |
| β-strand | 68-72 | 5 | 1 |
| β-strand | 80 | 1 | 21 |
| β-strand | 84-91 | 8 | 1 |
| β-strand | 93-96 | 4 | 22 |
| β-strand | 104-105 | 2 | 23 |
| α-helix | 112-118 | 7 | |
| β-strand | 123 | 1 | 24 |
| α-helix | 137-138 | 2 | |
| β-strand | 139-143 | 5 | 25 |
| β-strand | 151-152 | 2 | 26 |
| β-strand | 157-162 | 6 | 25 |
| β-strand | 170-173 | 4 | 25 |
| α-helix | 174-175 | 2 | |
| β-strand | 180-185 | 6 | 26 |
| β-strand | 189-191 | 3 | 25 |
| β-strand | 198-201 | 4 | 26 |
| β-strand | 206-209 | 4 | 26 |
| β-strand | 213-216 | 4 | 22 |
| α-helix | 220-222 | 3 | |
| β-strand | 223-226 | 4 | 27 |
| β-strand | 232 | 1 | 28 |
| α-helix | 238-243 | 6 | |
| β-strand | 247 | 1 | 28 |
| β-strand | 251-255 | 5 | 23 |
| α-helix | 261-271 | 11 | |
| β-strand | 277-285 | 9 | 23 |
| α-helix | 287-293 | 7 | |
| α-helix | 297-299 | 3 | |
| β-strand | 301-302 | 2 | 29 |
| β-strand | 309-310 | 2 | 29 |
| α-helix | 311-313 | 3 | |
| β-strand | 315-321 | 7 | 23 |
| α-helix | 326-344 | 19 | |
| β-strand | 349-354 | 6 | 23 |
| α-helix | 357-371 | 15 | |
| α-helix | 373-374 | 2 | |
| β-strand | 375-377 | 3 | 30 |
| β-strand | 380-381 | 2 | 30 |
| α-helix | 384-392 | 9 | |
| β-strand | 398-400 | 3 | 27 |
| β-strand | 407-408 | 2 | 27 |
| β-strand | 409-416 | 8 | 23 |
| β-strand | 419 | 1 | 31 |
| β-strand | 422 | 1 | 31 |
| α-helix | 426-432 | 7 | |
| β-strand | 437-438 | 2 | 23 |
| β-strand | 441 | 1 | 32 |
| α-helix | 443-447 | 5 | |
| β-strand | 454 | 1 | 32 |
| β-strand | 460-461 | 2 | 23 |
| α-helix | 468-474 | 7 | |
| α-helix | 478-502 | 25 | |
| α-helix | 509-521 | 13 | |
| α-helix | 522-526 | 5 | |
| α-helix | 540-562 | 23 | |
| α-helix | 567-573 | 7 | |
| α-helix | 575-583 | 9 | |
| α-helix | 584-586 | 3 | |
| α-helix | 589-591 | 3 | |
| α-helix | 593-614 | 22 | |
Chain d: 24 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 5-8 | 4 | |
| α-helix | 11-22 | 12 | |
| α-helix | 25-26 | 2 | |
| α-helix | 27-34 | 8 | |
| α-helix | 39-47 | 9 | |
| α-helix | 52-55 | 4 | |
| α-helix | 65-85 | 21 | |
| α-helix | 90-111 | 22 | |
| α-helix | 121-126 | 6 | |
| α-helix | 129-131 | 3 | |
| α-helix | 136-140 | 5 | |
| α-helix | 145-152 | 8 | |
| α-helix | 159-165 | 7 | |
| α-helix | 176-181 | 6 | |
| α-helix | 182-199 | 18 | |
| α-helix | 200-201 | 2 | |
| α-helix | 204-226 | 23 | |
| α-helix | 235-241 | 7 | |
| α-helix | 253-258 | 6 | |
| α-helix | 262-269 | 8 | |
| α-helix | 273-275 | 3 | |
| α-helix | 284-301 | 18 | |
| α-helix | 307-331 | 25 | |
| α-helix | 335-340 | 6 | |
Chain D: 24 helices, 33 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 26-28 | 3 | 1 |
| β-strand | 31-35 | 5 | 1 |
| β-strand | 38-41 | 4 | 1 |
| β-strand | 48 | 1 | 21 |
| β-strand | 52-56 | 5 | 1 |
| α-helix | 57 | 1 | |
| β-strand | 62-71 | 10 | 1 |
| β-strand | 74-79 | 6 | 1 |
| β-strand | 87 | 1 | 33 |
| β-strand | 92-95 | 4 | 1 |
| β-strand | 101-104 | 4 | 34 |
| α-helix | 106-108 | 3 | |
| β-strand | 112-114 | 3 | 35 |
| β-strand | 119 | 1 | 35 |
| β-strand | 130-133 | 4 | 34 |
| α-helix | 136-138 | 3 | |
| β-strand | 139 | 1 | 24 |
| α-helix | 140 | 1 | |
| α-helix | 141-143 | 3 | |
| β-strand | 144-145 | 2 | 36 |
| β-strand | 150-151 | 2 | 37 |
| α-helix | 156-159 | 4 | |
| β-strand | 164-165 | 2 | 37 |
| β-strand | 169 | 1 | 35 |
| β-strand | 172-174 | 3 | 35 |
| α-helix | 180-189 | 10 | |
| β-strand | 193 | 1 | 37 |
| α-helix | 208 | 1 | |
| β-strand | 209-217 | 9 | 35 |
| α-helix | 219-231 | 13 | |
| α-helix | 235-237 | 3 | |
| β-strand | 238-244 | 7 | 35 |
| α-helix | 250-253 | 4 | |
| α-helix | 254-268 | 15 | |
| β-strand | 273-279 | 7 | 35 |
| α-helix | 281-294 | 14 | |
| β-strand | 299 | 1 | 38 |
| α-helix | 301-303 | 3 | |
| β-strand | 305 | 1 | 38 |
| α-helix | 308-316 | 9 | |
| β-strand | 320 | 1 | 35 |
| β-strand | 321-322 | 2 | 36 |
| β-strand | 328-336 | 9 | 35 |
| α-helix | 345-353 | 9 | |
| β-strand | 357 | 1 | 39 |
| β-strand | 358-359 | 2 | 35 |
| β-strand | 360 | 1 | 40 |
| α-helix | 362-366 | 5 | |
| β-strand | 373 | 1 | 40 |
| β-strand | 379 | 1 | 39 |
| α-helix | 383-385 | 3 | |
| α-helix | 396-420 | 25 | |
| α-helix | 427-438 | 12 | |
| α-helix | 439-443 | 5 | |
| α-helix | 454-465 | 12 | |
| α-helix | 470-472 | 3 | |
| α-helix | 478-484 | 7 | |
23 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| H(+)-transporting two-sector ATPase | A, C, E | protein | 617 | Saccharomyces cerevisiae | B3LH69 (AlphaFold model) |
| Vacuolar proton pump subunit B | B, D, F | protein | 517 | Saccharomyces cerevisiae | A0A6A5Q585 |
| V-ATPase subunit E | G, I, K | protein | 233 | Saccharomyces cerevisiae | A0A6A5Q7Y8 |
| V-type proton ATPase subunit G | H, J, L | protein | 114 | Saccharomyces cerevisiae | P48836 (AlphaFold model) |
| V-type proton ATPase subunit D | M | protein | 256 | Saccharomyces cerevisiae | A0A6A5Q1W2 |
| V-type proton ATPase subunit F | N | protein | 118 | Saccharomyces cerevisiae | A0A6A5PYF6 |
| V-type proton ATPase subunit C | O | protein | 392 | Saccharomyces cerevisiae | A0A6A5PTP1 |
| V-type proton ATPase subunit H | P | protein | 478 | Saccharomyces cerevisiae | P41807 |
| V-type proton ATPase subunit a, vacuolar isoform | a | protein | 840 | Saccharomyces cerevisiae | P32563 |
| V0 assembly protein 1 | b | protein | 265 | Saccharomyces cerevisiae | P53262 |
| V-type proton ATPase subunit c'' | c | protein | 213 | Saccharomyces cerevisiae | P23968 |
| V-type proton ATPase subunit d | d | protein | 345 | Saccharomyces cerevisiae | P32366 |
4 more molecules are not listed.
Sequence of entity 1 (A, C, E), FASTA
>7TMS_1 H(+)-transporting two-sector ATPase (chains A, C, E)
MAGAIENARKEIKRISLEDHAESEYGAIYSVSGPVVIAENMIGCAMYELVKVGHDNLVGE
VIRIDGDKATIQVYEETAGLTVGDPVLRTGKPLSVELGPGLMETIYDGIQRPLKAIKEES
QSIYIPRGIDTPALDRTIKWQFTPGKFQVGDHISGGDIYGSVFENSLISSHKILLPPRSR
GTITWIAPAGEYTLDEKILEVEFDGKKSDFTLYHTWPVRVPRPVTEKLSADYPLLTGQRV
LDALFPCVQGGTTCIPGAFGCGKTVISQSLSKYSNSDAIIYVGCGERGNEMAEVLMEFPE
LYTEMSGTKEPIMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDQGKNVSMIADSSSR
WAEALREISGRLGEMPADQGFPAYLGAKLASFYERAGKAVALGSPDRTGSVSIVAAVSPA
GGDFSDPVTTATLGITQVFWGLDKKLAQRKHFPSINTSVSYSKYTNVLNKFYDSNYPEFP
VLRDRMKEILSNAEELEQVVQLVGKSALSDSDKITLDVATLIKEDFLQQNGYSTYDAFCP
IWKTFDMMRAFISYHDEAQKAVANGANWSKLADSTGDVKHAVSSSKFFEPSRGEKEVHGE
FEKLLSTMQERFAESTD
Sequence of entity 2 (B, D, F), FASTA
>7TMS_2 Vacuolar proton pump subunit B (chains B, D, F)
MVLSDKELFAINKKAVEQGFNVKPRLNYNTVSGVNGPLVILEKVKFPRYNEIVNLTLPDG
TVRQGQVLEIRGDRAIVQVFEGTSGIDVKKTTVEFTGESLRIPVSEDMLGRIFDGSGRPI
DNGPKVFAEDYLDINGSPINPYARIYPEEMISTGVSAIDTMNSIARGQKIPIFSASGLPH
NEIAAQICRQAGLVRPTKDVHDGHEENFSIVFAAMGVNLETARFFKQDFEENGSLERTSL
FLNLANDPTIERIITPRLALTTAEYLAYQTERHVLTILTDMSSYADALREVSAAREEVPG
RRGYPGYMYTDLSTIYERAGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIFV
DRQLHNKGIYPPINVLPSLSRLMKSAIGEGMTRKDHGDVSNQLYAKYAIGKDAAAMKAVV
GEEALSIEDKLSLEFLEKFEKTFITQGAYEDRTVFESLDQAWSLLRIYPKEMLNRISPKI
LDEFYDRARDDADEDEEDPDTRSSGKKKDASQEESLI
Sequence of entity 3 (G, I, K), FASTA
>7TMS_3 V-ATPase subunit E (chains G, I, K)
MSSAITALTPNQVNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDG
NFKSKLKKAMLSQQITKSTIANKMRLKVLSAREQSLDGIFEETKEKLSGIANNRDEYKPI
LQSLIVEALLKLLEPKAIVKALERDVDLIESMKDDIMREYGEKAQRAPLEEIVISNDYLN
KDLVSGGVVVSNASDKIEINNTLEERLKLLSEEALPAIRLELYGPSKTRKFFD
Sequence of entity 4 (H, J, L), FASTA
>7TMS_4 V-type proton ATPase subunit G (chains H, J, L)
MSQKNGIATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDKELKEFEQK
NAGGVGELEKKAEAGVQGELAEIKKIAEKKKDDVVKILIETVIKPSAEVHINAL
Sequence of entity 5 (M), FASTA
>7TMS_5 V-type proton ATPase subunit D (chains M)
MSGNREQVFPTRMTLGLMKTKLKGANQGYSLLKRKSEALTKRFRDITKRIDDAKQKMGRV
MQTAAFSLAEVSYATGENIGYQVQESVSTARFKVRARQENVSGVYLSQFESYIDPEINDF
RLTGLGRGGQQVQRAKEIYSRAVETLVELASLQTAFIILDEVIKVTNRRVNAIEHVIIPR
TENTIAYINSELDELDREEFYRLKKVQEKKQNETAKLDAEMKLKRDRAEQDASEVAADEE
PQGETLVADQEDDVIF
Sequence of entity 6 (N), FASTA
>7TMS_6 V-type proton ATPase subunit F (chains N)
MAEKRTLIAVIADEDTTTGLLLAGIGQITPETQEKNFFVYQEGKTTKEEITDKFNHFTEE
RDDIAILLINQHIAENIRARVDSFTNAFPAILEIPSKDHPYDPEKDSVLKRVRKLFGE
Sequence of entity 7 (O), FASTA
>7TMS_7 V-type proton ATPase subunit C (chains O)
MATALYTANDFILISLPQNAQPVTAPGSKTDSWFNETLIGGRAFVSDFKIPEFKIGSLDT
LIVESEELSKVDNQIGASIGKIIEILQGLNETSTNAYRTLPINNMPVPEYLENFQWQTRK
FKLDKSIKDLITLISNESSQLDADVRATYANYNSAKTNLAAAERKKTGDLSVRSLHDIVK
PEDFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSKNVVPASASVIAEDAEYVLFNVHLFK
KNVQEFTTAAREKKFIPREFNYSEELIDQLKKEHDSAASLEQSLRVQLVRLAKTAYVDVF
INWFHIKALRVYVESVLRYGLPPHFNIKIIAVPPKNLSKCKSELIDAFGFLGGNAFMKDK
KGKINKQDTSLHQYASLVDTEYEPFVMYIINL
Sequence of entity 8 (P), FASTA
>7TMS_8 V-type proton ATPase subunit H (chains P)
MGATKILMDSTHFNEIRSIIRSRSVAWDALARSEELSEIDASTAKALESILVKKNIGDGL
SSSNNAHSGFKVNGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQED
PKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQM
DTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGI
QLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCST
RVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYV
AELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIII
QVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYTFK
Sequence of entity 9 (a), FASTA
>7TMS_9 V-type proton ATPase subunit a, vacuolar isoform (chains a)
MAEKEEAIFRSAEMALVQFYIPQEISRDSAYTLGQLGLVQFRDLNSKVRAFQRTFVNEIR
RLDNVERQYRYFYSLLKKHDIKLYEGDTDKYLDGSGELYVPPSGSVIDDYVRNASYLEER
LIQMEDATDQIEVQKNDLEQYRFILQSGDEFFLKGDNTDSTSYMDEDMIDANGENIAAAI
GASVNYVTGVIARDKVATLEQILWRVLRGNLFFKTVEIEQPVYDVKTREYKHKNAFIVFS
HGDLIIKRIRKIAESLDANLYDVDSSNEGRSQQLAKVNKNLSDLYTVLKTTSTTLESELY
AIAKELDSWFQDVTREKAIFEILNKSNYDTNRKILIAEGWIPRDELATLQARLGEMIARL
GIDVPSIIQVLDTNHTPPTFHRTNKFTAGFQSICDCYGIAQYREINAGLPTIVTFPFMFA
IMFGDMGHGFLMTLAALSLVLNEKKINKMKRGEIFDMAFTGRYIILLMGVFSMYTGFLYN
DIFSKTMTIFKSGWKWPDHWKKGESITATSVGTYPIGLDWAWHGTENALLFSNSYKMKLS
ILMGFIHMTYSYFFSLANHLYFNSMIDIIGNFIPGLLFMQGIFGYLSVCIVYKWAVDWVK
DGKPAPGLLNMLINMFLSPGTIDDELYPHQAKVQVFLLLMALVCIPWLLLVKPLHFKFTH
KKKSHEPLPSTEADASSEDLEAQQLISAMDADDAEEEEVGSGSHGEDFGDIMIHQVIHTI
EFCLNCVSHTASYLRLWALSLAHAQLSSVLWTMTIQIAFGFRGFVGVFMTVALFAMWFAL
TCAVLVLMEGTSAMLHSLRLHWVESMSKFFVGEGLPYEPFAFEYKDMEVAVASASSSASS
Sequence of entity 10 (b), FASTA
>7TMS_10 V0 assembly protein 1 (chains b)
MVFGQLYALFIFTLSCCISKTVQADSSKESSSFISFDKESNWDTISTISSTADVISSVDS
AIAVFEFDNFSLLDNLMIDEEYPFFNRFFANDVSLTVHDDSPLNISQSLSPIMEQFTVDE
LPESASDLLYEYSLDDKSIVLFKFTSDAYDLKKLDEFIDSCLSFLEDKSGDNLTVVINSL
GWAFEDEDGDDEYATEETLSHHDNNKGKEGDDDILSSIWTEGLLMCLIVSALLLFILIVA
LSWISNLDITYGALEKSTNPIKKNN
Sequence of entity 11 (c), FASTA
>7TMS_11 V-type proton ATPase subunit c'' (chains c)
MNKESKDDDMSLGKFSFSHFLYYLVLIVVIVYGLYKLFTGHGSDINFGKFLLRTSPYMWA
NLGIALCVGLSVVGAAWGIFITGSSMIGAGVRAPRITTKNLISIIFCEVVAIYGLIIAIV
FSSKLTVATAENMYSKSNLYTGYSLFWAGITVGASNLICGIAVGITGATAAISDAADSAL
FVKILVIEIFGSILGLLGLIVGLLMAGKASEFQ
Sequence of entity 12 (d), FASTA
>7TMS_12 V-type proton ATPase subunit d (chains d)
MEGVYFNIDNGFIEGVVRGYRNGLLSNNQYINLTQCDTLEDLKLQLSSTDYGNFLSSVSS
ESLTTSLIQEYASSKLYHEFNYIRDQSSGSTRKFMDYITYGYMIDNVALMITGTIHDRDK
GEILQRCHPLGWFDTLPTLSVATDLESLYETVLVDTPLAPYFKNCFDTAEELDDMNIEII
RNKLYKAYLEDFYNFVTEEIPEPAKECMQTLLGFEADRRSINIALNSLQSSDIDPDLKSD
LLPNIGKLYPLATFHLAQAQDFEGVRAALANVYEYRGFLETGNLEDHFYQLEMELCRDAF
TQQFAISTVWAWMKSKEQEVRNITWIAECIAQNQRERINNYISVY
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| ADP | Adenosine-5'-diphosphate | C10 H15 N5 O10 P2 | 1 |
Primary citation
Coordinated conformational changes in the V 1 complex during V-ATPase reversible dissociation. Vasanthakumar, T., Keon, K.A., Bueler, S.A. et al. Nat Struct Mol Biol (2022) 29:430-439. DOI 10.1038/s41594-022-00757-z · PubMed
Other PDB entries of the same protein (UniProt B3LH69 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 9MOY 3.6 Å, Reconstituted yeast V-ATPase bound to Rtc5p
- 7TMT 3.8 Å, V-ATPase from Saccharomyces cerevisiae, State 3
- 6O7V 6.6 Å, Saccharomyces cerevisiae V-ATPase Stv1-V1VO State 1
- 5VOX 6.8 Å, Yeast V-ATPase in complex with Legionella pneumophila effector SidK (rotational state 1)
- 6O7W 7.0 Å, Saccharomyces cerevisiae V-ATPase Stv1-V1VO State 2
- 5VOZ 7.6 Å, Yeast V-ATPase in complex with Legionella pneumophila effector SidK (rotational state 3)
- 5VOY 7.9 Å, Yeast V-ATPase in complex with Legionella pneumophila effector SidK (rotational state 2)
- 6O7X 8.7 Å, Saccharomyces cerevisiae V-ATPase Stv1-V1VO State 3
Browse structure collections
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