7TMT: V-ATPase from Saccharomyces cerevisiae, State 3
V-ATPase from Saccharomyces cerevisiae, State 3. Determined by electron microscopy at 3.8 Å resolution. Released 20 Apr 2022.
- Method
- Electron microscopy
- Resolution
- 3.8 Å
- Organism
- Saccharomyces cerevisiae
- Chains
- 31
- Atoms
- 53,433
- Mol. weight
- 989.86 kDa
- Ligands
- ADP
- Released
- 20 Apr 2022
Explore 7TMT in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
7TMT contains 362 α-helices and 300 β-strands across 31 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain a: 39 helices, 22 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 8 | 1 | 89 |
| β-strand | 13 | 1 | 90 |
| β-strand | 16-20 | 5 | 91 |
| α-helix | 26-36 | 11 | |
| β-strand | 40-41 | 2 | 91 |
| α-helix | 45-47 | 3 | |
| α-helix | 50-52 | 3 | |
| α-helix | 56-78 | 23 | |
| α-helix | 85-98 | 14 | |
| α-helix | 107-141 | 35 | |
| β-strand | 187 | 1 | 92 |
| β-strand | 188-192 | 5 | 93 |
| α-helix | 193-195 | 3 | |
| α-helix | 196-206 | 11 | |
| β-strand | 212-214 | 3 | 92 |
| β-strand | 217 | 1 | 93 |
| β-strand | 222-223 | 2 | 94 |
| β-strand | 230-231 | 2 | 94 |
| β-strand | 233-235 | 3 | 93 |
| β-strand | 237-239 | 3 | 92 |
| α-helix | 243-255 | 13 | |
| β-strand | 259-261 | 3 | 93 |
| α-helix | 267-325 | 59 | |
| α-helix | 333 | 1 | |
| β-strand | 336-340 | 5 | 91 |
| α-helix | 346-359 | 14 | |
| β-strand | 367-370 | 4 | 91 |
| α-helix | 376-377 | 2 | |
| β-strand | 378-379 | 2 | 95 |
| β-strand | 380 | 1 | 90 |
| α-helix | 388-395 | 8 | |
| α-helix | 400-402 | 3 | |
| β-strand | 406 | 1 | 89 |
| α-helix | 409-423 | 15 | |
| α-helix | 426-441 | 16 | |
| α-helix | 443-448 | 6 | |
| α-helix | 455-460 | 6 | |
| α-helix | 464-478 | 15 | |
| β-strand | 494-495 | 2 | 96 |
| β-strand | 506-507 | 2 | 97 |
| β-strand | 509-510 | 2 | 96 |
| α-helix | 526-561 | 36 | |
| α-helix | 565-567 | 3 | |
| α-helix | 568-572 | 5 | |
| α-helix | 573-579 | 7 | |
| α-helix | 580-584 | 5 | |
| α-helix | 585-595 | 11 | |
| α-helix | 598-601 | 4 | |
| α-helix | 603-607 | 5 | |
| α-helix | 608-617 | 10 | |
| α-helix | 628-646 | 19 | |
| α-helix | 647-651 | 5 | |
| α-helix | 712-732 | 21 | |
| α-helix | 734-758 | 25 | |
| α-helix | 764-780 | 17 | |
| α-helix | 781-790 | 10 | |
| α-helix | 791-800 | 10 | |
| α-helix | 801-805 | 5 | |
| α-helix | 806-809 | 4 | |
| β-strand | 815-816 | 2 | 95 |
| α-helix | 817 | 1 | |
Chain A: 27 helices, 44 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 25-31 | 7 | 1 |
| β-strand | 34-38 | 5 | 1 |
| β-strand | 47-51 | 5 | 1 |
| β-strand | 56-64 | 9 | 1 |
| β-strand | 67-72 | 6 | 1 |
| β-strand | 80 | 1 | 2 |
| β-strand | 84-91 | 8 | 1 |
| β-strand | 93-96 | 4 | 3 |
| β-strand | 104-105 | 2 | 4 |
| β-strand | 111 | 1 | 4 |
| α-helix | 114-118 | 5 | |
| β-strand | 123 | 1 | 5 |
| β-strand | 139-143 | 5 | 6 |
| β-strand | 151-152 | 2 | 7 |
| β-strand | 159-161 | 3 | 6 |
| β-strand | 164 | 1 | 8 |
| β-strand | 167 | 1 | 8 |
| β-strand | 170-172 | 3 | 6 |
| β-strand | 180-185 | 6 | 7 |
| α-helix | 186-187 | 2 | |
| β-strand | 189-191 | 3 | 6 |
| β-strand | 198-202 | 5 | 7 |
| β-strand | 205-209 | 5 | 7 |
| β-strand | 213-216 | 4 | 3 |
| α-helix | 220-222 | 3 | |
| β-strand | 225 | 1 | 9 |
| β-strand | 232 | 1 | 10 |
| α-helix | 238-242 | 5 | |
| β-strand | 247 | 1 | 10 |
| β-strand | 251-255 | 5 | 11 |
| α-helix | 262-271 | 10 | |
| β-strand | 278-282 | 5 | 4 |
| β-strand | 285 | 1 | 12 |
| α-helix | 287-296 | 10 | |
| α-helix | 297-299 | 3 | |
| β-strand | 301 | 1 | 13 |
| β-strand | 310 | 1 | 13 |
| α-helix | 311-313 | 3 | |
| β-strand | 315-318 | 4 | 4 |
| β-strand | 321 | 1 | 12 |
| α-helix | 326-330 | 5 | |
| α-helix | 332-345 | 14 | |
| β-strand | 351-352 | 2 | 11 |
| β-strand | 353-355 | 3 | 4 |
| α-helix | 357-371 | 15 | |
| α-helix | 373-375 | 3 | |
| β-strand | 377 | 1 | 14 |
| β-strand | 380 | 1 | 14 |
| α-helix | 384-393 | 10 | |
| β-strand | 398-399 | 2 | 9 |
| α-helix | 400 | 1 | |
| β-strand | 407-408 | 2 | 9 |
| β-strand | 411-416 | 6 | 11 |
| α-helix | 426-434 | 9 | |
| β-strand | 437 | 1 | 15 |
| β-strand | 438 | 1 | 11 |
| β-strand | 441 | 1 | 16 |
| α-helix | 443-447 | 5 | |
| β-strand | 454 | 1 | 16 |
| β-strand | 461 | 1 | 15 |
| α-helix | 468-474 | 7 | |
| α-helix | 478-501 | 24 | |
| α-helix | 504-506 | 3 | |
| α-helix | 509-521 | 13 | |
| α-helix | 522-526 | 5 | |
| α-helix | 540-562 | 23 | |
| α-helix | 567-573 | 7 | |
| α-helix | 575-583 | 9 | |
| α-helix | 584-586 | 3 | |
| α-helix | 589-591 | 3 | |
| α-helix | 593-615 | 23 | |
Chain b: 2 helices, 2 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 215 | 1 | 98 |
| β-strand | 219 | 1 | 98 |
| α-helix | 221-244 | 24 | |
| α-helix | 251-254 | 4 | |
Chain B: 25 helices, 33 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 16-20 | 5 | |
| β-strand | 26-28 | 3 | 1 |
| β-strand | 31-35 | 5 | 1 |
| β-strand | 38-41 | 4 | 1 |
| β-strand | 48 | 1 | 2 |
| β-strand | 52-56 | 5 | 1 |
| α-helix | 57 | 1 | |
| β-strand | 62-71 | 10 | 1 |
| β-strand | 74-79 | 6 | 1 |
| β-strand | 92-95 | 4 | 1 |
| β-strand | 101-104 | 4 | 17 |
| β-strand | 113 | 1 | 18 |
| β-strand | 119 | 1 | 18 |
| β-strand | 130-133 | 4 | 17 |
| α-helix | 138 | 1 | |
| β-strand | 139 | 1 | 5 |
| α-helix | 140 | 1 | |
| α-helix | 141-143 | 3 | |
| β-strand | 144 | 1 | 19 |
| β-strand | 150 | 1 | 20 |
| β-strand | 151-152 | 2 | 21 |
| α-helix | 156-159 | 4 | |
| β-strand | 165 | 1 | 20 |
| β-strand | 169 | 1 | 18 |
| β-strand | 172-174 | 3 | 22 |
| α-helix | 180-190 | 11 | |
| β-strand | 192-193 | 2 | 21 |
| α-helix | 195-198 | 4 | |
| α-helix | 203-205 | 3 | |
| β-strand | 210 | 1 | 23 |
| β-strand | 212-217 | 6 | 18 |
| α-helix | 219-231 | 13 | |
| α-helix | 233-237 | 5 | |
| β-strand | 238 | 1 | 23 |
| β-strand | 241-244 | 4 | 18 |
| α-helix | 249-264 | 16 | |
| α-helix | 265-269 | 5 | |
| β-strand | 274-279 | 6 | 18 |
| α-helix | 281-294 | 14 | |
| α-helix | 297-299 | 3 | |
| α-helix | 301-303 | 3 | |
| α-helix | 308-316 | 9 | |
| β-strand | 320-321 | 2 | 18 |
| β-strand | 322 | 1 | 19 |
| β-strand | 328-333 | 6 | 18 |
| β-strand | 334-336 | 3 | 22 |
| α-helix | 345-353 | 9 | |
| β-strand | 356-357 | 2 | 24 |
| β-strand | 360 | 1 | 22 |
| α-helix | 362-366 | 5 | |
| β-strand | 373 | 1 | 22 |
| β-strand | 379-380 | 2 | 24 |
| α-helix | 383-386 | 4 | |
| α-helix | 396-416 | 21 | |
| α-helix | 427-438 | 12 | |
| α-helix | 439-443 | 5 | |
| α-helix | 454-465 | 12 | |
| α-helix | 478-484 | 7 | |
Chain c: 9 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 17-37 | 21 | |
| α-helix | 42-50 | 9 | |
| α-helix | 56-90 | 35 | |
| α-helix | 94-99 | 6 | |
| α-helix | 101-124 | 24 | |
| α-helix | 131-133 | 3 | |
| α-helix | 134-138 | 5 | |
| α-helix | 139-174 | 36 | |
| α-helix | 178-208 | 31 | |
Chain C: 25 helices, 45 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 26-30 | 5 | 1 |
| β-strand | 34-38 | 5 | 1 |
| α-helix | 43-44 | 2 | |
| β-strand | 47 | 1 | 25 |
| β-strand | 48 | 1 | 1 |
| β-strand | 49-51 | 3 | 25 |
| β-strand | 56 | 1 | 25 |
| β-strand | 59-64 | 6 | 1 |
| β-strand | 67-71 | 5 | 1 |
| β-strand | 80 | 1 | 26 |
| β-strand | 85-91 | 7 | 25 |
| β-strand | 93 | 1 | 27 |
| β-strand | 96 | 1 | 28 |
| β-strand | 104-105 | 2 | 29 |
| β-strand | 111 | 1 | 29 |
| α-helix | 112-118 | 7 | |
| β-strand | 123 | 1 | 30 |
| β-strand | 139-142 | 4 | 31 |
| β-strand | 151-152 | 2 | 32 |
| β-strand | 157 | 1 | 33 |
| β-strand | 160-161 | 2 | 31 |
| β-strand | 170 | 1 | 31 |
| β-strand | 173 | 1 | 33 |
| β-strand | 180-185 | 6 | 32 |
| β-strand | 189-191 | 3 | 31 |
| β-strand | 196-201 | 6 | 32 |
| β-strand | 202 | 1 | 34 |
| β-strand | 205 | 1 | 34 |
| β-strand | 208-210 | 3 | 32 |
| β-strand | 213 | 1 | 28 |
| β-strand | 216 | 1 | 27 |
| α-helix | 220-222 | 3 | |
| β-strand | 225-226 | 2 | 35 |
| β-strand | 232 | 1 | 36 |
| α-helix | 238-242 | 5 | |
| β-strand | 247 | 1 | 36 |
| α-helix | 262-271 | 10 | |
| β-strand | 278-285 | 8 | 29 |
| α-helix | 287-296 | 10 | |
| α-helix | 297-299 | 3 | |
| α-helix | 311-314 | 4 | |
| β-strand | 315-321 | 7 | 29 |
| α-helix | 326-344 | 19 | |
| β-strand | 351-352 | 2 | 29 |
| β-strand | 355 | 1 | 29 |
| α-helix | 357-371 | 15 | |
| α-helix | 373-375 | 3 | |
| β-strand | 377 | 1 | 37 |
| β-strand | 380 | 1 | 37 |
| α-helix | 384-392 | 9 | |
| β-strand | 397-399 | 3 | 35 |
| α-helix | 405 | 1 | |
| β-strand | 407-409 | 3 | 35 |
| β-strand | 411-412 | 2 | 29 |
| α-helix | 426-432 | 7 | |
| β-strand | 437-438 | 2 | 38 |
| β-strand | 441 | 1 | 39 |
| α-helix | 443-447 | 5 | |
| β-strand | 454 | 1 | 39 |
| β-strand | 460-461 | 2 | 38 |
| α-helix | 468-474 | 7 | |
| α-helix | 478-499 | 22 | |
| α-helix | 504-506 | 3 | |
| α-helix | 509-524 | 16 | |
| α-helix | 540-562 | 23 | |
| α-helix | 567-573 | 7 | |
| α-helix | 575-583 | 9 | |
| α-helix | 584-586 | 3 | |
| α-helix | 589-591 | 3 | |
| α-helix | 593-615 | 23 | |
Chain d: 20 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 6-21 | 16 | |
| α-helix | 27-35 | 9 | |
| α-helix | 39-48 | 10 | |
| α-helix | 53-56 | 4 | |
| α-helix | 65-85 | 21 | |
| α-helix | 90-111 | 22 | |
| α-helix | 121-126 | 6 | |
| α-helix | 129-131 | 3 | |
| α-helix | 136-141 | 6 | |
| α-helix | 145-153 | 9 | |
| α-helix | 159-164 | 6 | |
| α-helix | 176-180 | 5 | |
| α-helix | 181-199 | 19 | |
| α-helix | 204-227 | 24 | |
| α-helix | 235-241 | 7 | |
| α-helix | 251-258 | 8 | |
| α-helix | 262-269 | 8 | |
| α-helix | 284-301 | 18 | |
| α-helix | 307-331 | 25 | |
| α-helix | 338-340 | 3 | |
Chain D: 24 helices, 37 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 17-19 | 3 | |
| α-helix | 24-25 | 2 | |
| β-strand | 26-27 | 2 | 1 |
| β-strand | 31-35 | 5 | 1 |
| β-strand | 38-42 | 5 | 1 |
| β-strand | 48 | 1 | 26 |
| β-strand | 51-56 | 6 | 1 |
| β-strand | 62-71 | 10 | 1 |
| β-strand | 74-79 | 6 | 1 |
| β-strand | 87 | 1 | 40 |
| β-strand | 92-99 | 8 | 1 |
| β-strand | 101-104 | 4 | 41 |
| β-strand | 113-114 | 2 | 42 |
| β-strand | 119 | 1 | 42 |
| β-strand | 130-133 | 4 | 41 |
| β-strand | 139 | 1 | 30 |
| β-strand | 144 | 1 | 43 |
| β-strand | 150 | 1 | 44 |
| β-strand | 151 | 1 | 45 |
| α-helix | 156-159 | 4 | |
| α-helix | 163-164 | 2 | |
| β-strand | 165 | 1 | 44 |
| β-strand | 169 | 1 | 46 |
| β-strand | 172-174 | 3 | 47 |
| α-helix | 180-190 | 11 | |
| β-strand | 193 | 1 | 45 |
| α-helix | 201-204 | 4 | |
| β-strand | 213-214 | 2 | 48 |
| β-strand | 215-217 | 3 | 49 |
| α-helix | 219-232 | 14 | |
| α-helix | 234-237 | 4 | |
| β-strand | 241-242 | 2 | 42 |
| β-strand | 243-244 | 2 | 49 |
| α-helix | 251-253 | 3 | |
| α-helix | 255-264 | 10 | |
| α-helix | 265-269 | 5 | |
| β-strand | 273-276 | 4 | 46 |
| β-strand | 278-279 | 2 | 48 |
| α-helix | 281-294 | 14 | |
| α-helix | 297-298 | 2 | |
| β-strand | 299 | 1 | 50 |
| β-strand | 305 | 1 | 50 |
| α-helix | 308-316 | 9 | |
| β-strand | 322 | 1 | 43 |
| β-strand | 325 | 1 | 43 |
| β-strand | 328-331 | 4 | 46 |
| β-strand | 335-336 | 2 | 47 |
| α-helix | 338-340 | 3 | |
| α-helix | 345-353 | 9 | |
| β-strand | 357 | 1 | 51 |
| β-strand | 358-360 | 3 | 47 |
| α-helix | 362-366 | 5 | |
| β-strand | 373 | 1 | 47 |
| β-strand | 379 | 1 | 51 |
| α-helix | 383-385 | 3 | |
| α-helix | 396-419 | 24 | |
| α-helix | 422-424 | 3 | |
| α-helix | 427-442 | 16 | |
| α-helix | 454-465 | 12 | |
| α-helix | 470-472 | 3 | |
| α-helix | 478-484 | 7 | |
23 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| H(+)-transporting two-sector ATPase | A, C, E | protein | 617 | Saccharomyces cerevisiae | B3LH69 (AlphaFold model) |
| Vacuolar proton pump subunit B | B, D, F | protein | 517 | Saccharomyces cerevisiae | A0A6A5Q585 |
| V-ATPase subunit E | G, I, K | protein | 233 | Saccharomyces cerevisiae | A0A6A5Q7Y8 |
| V-type proton ATPase subunit G | H, J, L | protein | 114 | Saccharomyces cerevisiae | P48836 (AlphaFold model) |
| V-type proton ATPase subunit D | M | protein | 256 | Saccharomyces cerevisiae | A0A6A5Q1W2 |
| V-type proton ATPase subunit F | N | protein | 118 | Saccharomyces cerevisiae | A0A6A5PYF6 |
| V-type proton ATPase subunit C | O | protein | 392 | Saccharomyces cerevisiae | A0A6A5PTP1 |
| V-type proton ATPase subunit H | P | protein | 478 | Saccharomyces cerevisiae | P41807 |
| V-type proton ATPase subunit a, vacuolar isoform | a | protein | 840 | Saccharomyces cerevisiae | P32563 |
| V0 assembly protein 1 | b | protein | 265 | Saccharomyces cerevisiae | P53262 |
| V-type proton ATPase subunit c'' | c | protein | 213 | Saccharomyces cerevisiae | P23968 |
| V-type proton ATPase subunit d | d | protein | 345 | Saccharomyces cerevisiae | P32366 |
4 more molecules are not listed.
Sequence of entity 1 (A, C, E), FASTA
>7TMT_1 H(+)-transporting two-sector ATPase (chains A, C, E)
MAGAIENARKEIKRISLEDHAESEYGAIYSVSGPVVIAENMIGCAMYELVKVGHDNLVGE
VIRIDGDKATIQVYEETAGLTVGDPVLRTGKPLSVELGPGLMETIYDGIQRPLKAIKEES
QSIYIPRGIDTPALDRTIKWQFTPGKFQVGDHISGGDIYGSVFENSLISSHKILLPPRSR
GTITWIAPAGEYTLDEKILEVEFDGKKSDFTLYHTWPVRVPRPVTEKLSADYPLLTGQRV
LDALFPCVQGGTTCIPGAFGCGKTVISQSLSKYSNSDAIIYVGCGERGNEMAEVLMEFPE
LYTEMSGTKEPIMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDQGKNVSMIADSSSR
WAEALREISGRLGEMPADQGFPAYLGAKLASFYERAGKAVALGSPDRTGSVSIVAAVSPA
GGDFSDPVTTATLGITQVFWGLDKKLAQRKHFPSINTSVSYSKYTNVLNKFYDSNYPEFP
VLRDRMKEILSNAEELEQVVQLVGKSALSDSDKITLDVATLIKEDFLQQNGYSTYDAFCP
IWKTFDMMRAFISYHDEAQKAVANGANWSKLADSTGDVKHAVSSSKFFEPSRGEKEVHGE
FEKLLSTMQERFAESTD
Sequence of entity 2 (B, D, F), FASTA
>7TMT_2 Vacuolar proton pump subunit B (chains B, D, F)
MVLSDKELFAINKKAVEQGFNVKPRLNYNTVSGVNGPLVILEKVKFPRYNEIVNLTLPDG
TVRQGQVLEIRGDRAIVQVFEGTSGIDVKKTTVEFTGESLRIPVSEDMLGRIFDGSGRPI
DNGPKVFAEDYLDINGSPINPYARIYPEEMISTGVSAIDTMNSIARGQKIPIFSASGLPH
NEIAAQICRQAGLVRPTKDVHDGHEENFSIVFAAMGVNLETARFFKQDFEENGSLERTSL
FLNLANDPTIERIITPRLALTTAEYLAYQTERHVLTILTDMSSYADALREVSAAREEVPG
RRGYPGYMYTDLSTIYERAGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIFV
DRQLHNKGIYPPINVLPSLSRLMKSAIGEGMTRKDHGDVSNQLYAKYAIGKDAAAMKAVV
GEEALSIEDKLSLEFLEKFEKTFITQGAYEDRTVFESLDQAWSLLRIYPKEMLNRISPKI
LDEFYDRARDDADEDEEDPDTRSSGKKKDASQEESLI
Sequence of entity 3 (G, I, K), FASTA
>7TMT_3 V-ATPase subunit E (chains G, I, K)
MSSAITALTPNQVNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDG
NFKSKLKKAMLSQQITKSTIANKMRLKVLSAREQSLDGIFEETKEKLSGIANNRDEYKPI
LQSLIVEALLKLLEPKAIVKALERDVDLIESMKDDIMREYGEKAQRAPLEEIVISNDYLN
KDLVSGGVVVSNASDKIEINNTLEERLKLLSEEALPAIRLELYGPSKTRKFFD
Sequence of entity 4 (H, J, L), FASTA
>7TMT_4 V-type proton ATPase subunit G (chains H, J, L)
MSQKNGIATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDKELKEFEQK
NAGGVGELEKKAEAGVQGELAEIKKIAEKKKDDVVKILIETVIKPSAEVHINAL
Sequence of entity 5 (M), FASTA
>7TMT_5 V-type proton ATPase subunit D (chains M)
MSGNREQVFPTRMTLGLMKTKLKGANQGYSLLKRKSEALTKRFRDITKRIDDAKQKMGRV
MQTAAFSLAEVSYATGENIGYQVQESVSTARFKVRARQENVSGVYLSQFESYIDPEINDF
RLTGLGRGGQQVQRAKEIYSRAVETLVELASLQTAFIILDEVIKVTNRRVNAIEHVIIPR
TENTIAYINSELDELDREEFYRLKKVQEKKQNETAKLDAEMKLKRDRAEQDASEVAADEE
PQGETLVADQEDDVIF
Sequence of entity 6 (N), FASTA
>7TMT_6 V-type proton ATPase subunit F (chains N)
MAEKRTLIAVIADEDTTTGLLLAGIGQITPETQEKNFFVYQEGKTTKEEITDKFNHFTEE
RDDIAILLINQHIAENIRARVDSFTNAFPAILEIPSKDHPYDPEKDSVLKRVRKLFGE
Sequence of entity 7 (O), FASTA
>7TMT_7 V-type proton ATPase subunit C (chains O)
MATALYTANDFILISLPQNAQPVTAPGSKTDSWFNETLIGGRAFVSDFKIPEFKIGSLDT
LIVESEELSKVDNQIGASIGKIIEILQGLNETSTNAYRTLPINNMPVPEYLENFQWQTRK
FKLDKSIKDLITLISNESSQLDADVRATYANYNSAKTNLAAAERKKTGDLSVRSLHDIVK
PEDFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSKNVVPASASVIAEDAEYVLFNVHLFK
KNVQEFTTAAREKKFIPREFNYSEELIDQLKKEHDSAASLEQSLRVQLVRLAKTAYVDVF
INWFHIKALRVYVESVLRYGLPPHFNIKIIAVPPKNLSKCKSELIDAFGFLGGNAFMKDK
KGKINKQDTSLHQYASLVDTEYEPFVMYIINL
Sequence of entity 8 (P), FASTA
>7TMT_8 V-type proton ATPase subunit H (chains P)
MGATKILMDSTHFNEIRSIIRSRSVAWDALARSEELSEIDASTAKALESILVKKNIGDGL
SSSNNAHSGFKVNGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQED
PKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQM
DTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGI
QLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCST
RVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYV
AELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIII
QVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYTFK
Sequence of entity 9 (a), FASTA
>7TMT_9 V-type proton ATPase subunit a, vacuolar isoform (chains a)
MAEKEEAIFRSAEMALVQFYIPQEISRDSAYTLGQLGLVQFRDLNSKVRAFQRTFVNEIR
RLDNVERQYRYFYSLLKKHDIKLYEGDTDKYLDGSGELYVPPSGSVIDDYVRNASYLEER
LIQMEDATDQIEVQKNDLEQYRFILQSGDEFFLKGDNTDSTSYMDEDMIDANGENIAAAI
GASVNYVTGVIARDKVATLEQILWRVLRGNLFFKTVEIEQPVYDVKTREYKHKNAFIVFS
HGDLIIKRIRKIAESLDANLYDVDSSNEGRSQQLAKVNKNLSDLYTVLKTTSTTLESELY
AIAKELDSWFQDVTREKAIFEILNKSNYDTNRKILIAEGWIPRDELATLQARLGEMIARL
GIDVPSIIQVLDTNHTPPTFHRTNKFTAGFQSICDCYGIAQYREINAGLPTIVTFPFMFA
IMFGDMGHGFLMTLAALSLVLNEKKINKMKRGEIFDMAFTGRYIILLMGVFSMYTGFLYN
DIFSKTMTIFKSGWKWPDHWKKGESITATSVGTYPIGLDWAWHGTENALLFSNSYKMKLS
ILMGFIHMTYSYFFSLANHLYFNSMIDIIGNFIPGLLFMQGIFGYLSVCIVYKWAVDWVK
DGKPAPGLLNMLINMFLSPGTIDDELYPHQAKVQVFLLLMALVCIPWLLLVKPLHFKFTH
KKKSHEPLPSTEADASSEDLEAQQLISAMDADDAEEEEVGSGSHGEDFGDIMIHQVIHTI
EFCLNCVSHTASYLRLWALSLAHAQLSSVLWTMTIQIAFGFRGFVGVFMTVALFAMWFAL
TCAVLVLMEGTSAMLHSLRLHWVESMSKFFVGEGLPYEPFAFEYKDMEVAVASASSSASS
Sequence of entity 10 (b), FASTA
>7TMT_10 V0 assembly protein 1 (chains b)
MVFGQLYALFIFTLSCCISKTVQADSSKESSSFISFDKESNWDTISTISSTADVISSVDS
AIAVFEFDNFSLLDNLMIDEEYPFFNRFFANDVSLTVHDDSPLNISQSLSPIMEQFTVDE
LPESASDLLYEYSLDDKSIVLFKFTSDAYDLKKLDEFIDSCLSFLEDKSGDNLTVVINSL
GWAFEDEDGDDEYATEETLSHHDNNKGKEGDDDILSSIWTEGLLMCLIVSALLLFILIVA
LSWISNLDITYGALEKSTNPIKKNN
Sequence of entity 11 (c), FASTA
>7TMT_11 V-type proton ATPase subunit c'' (chains c)
MNKESKDDDMSLGKFSFSHFLYYLVLIVVIVYGLYKLFTGHGSDINFGKFLLRTSPYMWA
NLGIALCVGLSVVGAAWGIFITGSSMIGAGVRAPRITTKNLISIIFCEVVAIYGLIIAIV
FSSKLTVATAENMYSKSNLYTGYSLFWAGITVGASNLICGIAVGITGATAAISDAADSAL
FVKILVIEIFGSILGLLGLIVGLLMAGKASEFQ
Sequence of entity 12 (d), FASTA
>7TMT_12 V-type proton ATPase subunit d (chains d)
MEGVYFNIDNGFIEGVVRGYRNGLLSNNQYINLTQCDTLEDLKLQLSSTDYGNFLSSVSS
ESLTTSLIQEYASSKLYHEFNYIRDQSSGSTRKFMDYITYGYMIDNVALMITGTIHDRDK
GEILQRCHPLGWFDTLPTLSVATDLESLYETVLVDTPLAPYFKNCFDTAEELDDMNIEII
RNKLYKAYLEDFYNFVTEEIPEPAKECMQTLLGFEADRRSINIALNSLQSSDIDPDLKSD
LLPNIGKLYPLATFHLAQAQDFEGVRAALANVYEYRGFLETGNLEDHFYQLEMELCRDAF
TQQFAISTVWAWMKSKEQEVRNITWIAECIAQNQRERINNYISVY
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| ADP | Adenosine-5'-diphosphate | C10 H15 N5 O10 P2 | 1 |
Primary citation
Coordinated conformational changes in the V 1 complex during V-ATPase reversible dissociation. Vasanthakumar, T., Keon, K.A., Bueler, S.A. et al. Nat Struct Mol Biol (2022) 29:430-439. DOI 10.1038/s41594-022-00757-z · PubMed
Other PDB entries of the same protein (UniProt B3LH69 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 9MOY 3.6 Å, Reconstituted yeast V-ATPase bound to Rtc5p
- 7TMS 3.8 Å, V-ATPase from Saccharomyces cerevisiae, State 2
- 6O7V 6.6 Å, Saccharomyces cerevisiae V-ATPase Stv1-V1VO State 1
- 5VOX 6.8 Å, Yeast V-ATPase in complex with Legionella pneumophila effector SidK (rotational state 1)
- 6O7W 7.0 Å, Saccharomyces cerevisiae V-ATPase Stv1-V1VO State 2
- 5VOZ 7.6 Å, Yeast V-ATPase in complex with Legionella pneumophila effector SidK (rotational state 3)
- 5VOY 7.9 Å, Yeast V-ATPase in complex with Legionella pneumophila effector SidK (rotational state 2)
- 6O7X 8.7 Å, Saccharomyces cerevisiae V-ATPase Stv1-V1VO State 3
Browse structure collections
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