7TO8: BRD3-BD1

BRD3-BD1 in complex with RaPID linear peptide 2xAcK.1 (diAcK.1). Determined by X-ray diffraction at 1.5 Å resolution. Released 25 Jan 2023.

Method: X-ray diffraction
Resolution: 1.5 Å
Organisms: Homo sapiens, synthetic construct
Chains: 3
Atoms: 2,439
Mol. weight: 32.13 kDa
Released: 25 Jan 2023

Explore 7TO8 in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

7TO8 contains 17 α-helices and 4 β-strands across 3 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chains A and B: 8 helices, 2 β-strands

Element	Residues	Length	Sheet
β-strand	36	1	1
α-helix	37-41	5
α-helix	42-47	6
α-helix	48-51	4
α-helix	57-59	3
α-helix	73-76	4
α-helix	83-91	9
α-helix	98-115	18
α-helix	121-138	18
β-strand	146	1	1

Chain C: 1 helix, 0 β-strands

Element	Residues	Length	Sheet
α-helix	5-13	9

Molecules and chains

Molecule	Chains	Type	Length	Organism	UniProt
Bromodomain-containing protein 3	A, B	protein	128	Homo sapiens	Q15059 (AlphaFold model)
2xAcK.1 (diAcK.1)	C	protein	14	synthetic construct

Sequence of entity 1 (A, B), FASTA

>7TO8_1 Bromodomain-containing protein 3 (chains A, B)
QPLGSEVSNPSKPGRKTNQLQYMQNVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKN
PMDMGTIKKRLENNYYWSASECMQDFNTMFTNCYIYNKPTDDIVLMAQALEKIFLQKVAQ
MPQEEVEL

Sequence of entity 2 (C), FASTA

>7TO8_2 2xAcK.1 (diAcK.1) (chains C)
AQRSLKLLKHLYHG

Primary citation

mRNA display reveals a class of high-affinity bromodomain-binding motifs that are not found in the human proteome. Low, J.K.K., Patel, K., Jones, N. et al. J Biol Chem (2023) 299:105482-105482. DOI 10.1016/j.jbc.2023.105482 · PubMed

Other PDB entries of the same protein (UniProt Q15059 (AlphaFold model), which also has an AlphaFold model), best resolution first:

6QJU 1.2 Å, Crystal structure of human Bromodomain containing protein 3 (BRD3) in complex with…
3S92 1.36 Å, Crystal Structure of the second bromodomain of human BRD3 in complex with the inhibitor…
9NN4 1.37 Å, BET BRD3-BD1 in complex with peptide 7.2
2NXB 1.4 Å, Crystal structure of human Bromodomain containing protein 3 (BRD3)
7TOA 1.41 Å, BRD3-BD1 in complex with RaPID linear peptide 3xAcK.1 (triAcK.1)
7LAY 1.45 Å, Crystal structure of the first bromodomain (BD1) of human BRD3 bound to SG3-179
8CV5 1.47 Å, Peptide 4.2B in complex with BRD3.2
7L72 1.5 Å, Crystal structure of the second bromodomain (BD2) of human BRD3 bound to Ro3280
7RJL 1.5 Å, Crystal structure of human Bromodomain containing protein 3 (BRD3) in complex with SHMT
7L9L 1.55 Å, Crystal structure of the second bromodomain (BD2) of human BRD3 bound to BI2536
7TO9 1.6 Å, BRD3-BD1 in complex with RaPID linear peptide 2xAcK.4xE (diAcK.4xE)
9MPN 1.6 Å, BRD3-BD1 A128T mutant

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