7ZW0: FAP-80S Complex - Rotated state
FAP-80S Complex - Rotated state. Determined by electron microscopy at 2.4 Å resolution. Released 5 Oct 2022.
- Method
- Electron microscopy
- Resolution
- 2.4 Å
- Organism
- Saccharomyces cerevisiae W303
- Chains
- 86
- Atoms
- 214,001
- Mol. weight
- 3333.33 kDa
- Ligands
- MG, SPD, ZN
- Released
- 5 Oct 2022
Explore 7ZW0 in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
7ZW0 contains 558 α-helices and 601 β-strands across 79 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain La: 8 helices, 5 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 23-26 | 4 | |
| β-strand | 31 | 1 | 187 |
| α-helix | 33-36 | 4 | |
| α-helix | 40-42 | 3 | |
| α-helix | 59-62 | 4 | |
| β-strand | 63-66 | 4 | 134 |
| α-helix | 70-79 | 10 | |
| β-strand | 81-86 | 6 | 134 |
| α-helix | 92-103 | 12 | |
| β-strand | 107-114 | 8 | 134 |
| β-strand | 120-126 | 7 | 134 |
| α-helix | 127 | 1 | |
| α-helix | 132-139 | 8 | |
Chain Lb: 5 helices, 9 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 12-20 | 9 | |
| α-helix | 24-30 | 7 | |
| β-strand | 32-34 | 3 | 136 |
| β-strand | 35 | 1 | 137 |
| α-helix | 37-43 | 7 | |
| β-strand | 47-49 | 3 | 136 |
| β-strand | 55-58 | 4 | 137 |
| β-strand | 67-69 | 3 | 137 |
| β-strand | 70-74 | 5 | 138 |
| β-strand | 79-88 | 10 | 138 |
| β-strand | 94-99 | 6 | 138 |
| α-helix | 101-103 | 3 | |
| β-strand | 104-108 | 5 | 137 |
| α-helix | 113-122 | 10 | |
Chain LB: 2 helices, 6 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 35 | 1 | 7 |
| β-strand | 70-71 | 2 | 8 |
| α-helix | 77-83 | 7 | |
| β-strand | 87-88 | 2 | 8 |
| β-strand | 108 | 1 | 9 |
| α-helix | 116-122 | 7 | |
| β-strand | 137 | 1 | 9 |
| β-strand | 169 | 1 | 7 |
Chain Lc: 7 helices, 5 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 9-13 | 5 | 140 |
| β-strand | 22-29 | 8 | 140 |
| β-strand | 40-48 | 9 | 140 |
| α-helix | 49-52 | 4 | |
| α-helix | 60-65 | 6 | |
| β-strand | 69-76 | 8 | 140 |
| α-helix | 77-79 | 3 | |
| β-strand | 80-86 | 7 | 140 |
| α-helix | 98-100 | 3 | |
| α-helix | 104-123 | 20 | |
| α-helix | 128-131 | 4 | |
| α-helix | 133-134 | 2 | |
Chain Ld: 7 helices, 7 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 3-5 | 3 | |
| α-helix | 7-10 | 4 | |
| α-helix | 42-48 | 7 | |
| β-strand | 72-74 | 3 | 142 |
| α-helix | 75-81 | 7 | |
| α-helix | 84-92 | 9 | |
| β-strand | 99-100 | 2 | 17 |
| β-strand | 101-103 | 3 | 143 |
| α-helix | 104-107 | 4 | |
| β-strand | 111-113 | 3 | 142 |
| β-strand | 124-127 | 4 | 143 |
| β-strand | 129-130 | 2 | 142 |
| α-helix | 132-141 | 10 | |
| β-strand | 144-147 | 4 | 143 |
Chain Le: 3 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 12-18 | 7 | |
| α-helix | 23-26 | 4 | |
| α-helix | 37-57 | 21 | |
Chain LE: 10 helices, 19 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 6-9 | 4 | |
| α-helix | 10-12 | 3 | |
| α-helix | 29-31 | 3 | |
| α-helix | 35-38 | 4 | |
| β-strand | 40-49 | 10 | 144 |
| β-strand | 58-64 | 7 | 144 |
| β-strand | 71-77 | 7 | 144 |
| α-helix | 78 | 1 | |
| β-strand | 79 | 1 | 145 |
| β-strand | 83 | 1 | 45 |
| β-strand | 87-91 | 5 | 144 |
| β-strand | 101 | 1 | 144 |
| β-strand | 103 | 1 | 146 |
| α-helix | 104-106 | 3 | |
| β-strand | 112-114 | 3 | 147 |
| β-strand | 116 | 1 | 148 |
| β-strand | 126 | 1 | 148 |
| β-strand | 134-140 | 7 | 147 |
| β-strand | 145-149 | 5 | 147 |
| β-strand | 155-159 | 5 | 147 |
| β-strand | 163 | 1 | 146 |
| β-strand | 165-166 | 2 | 147 |
| β-strand | 169 | 1 | 145 |
| α-helix | 174-176 | 3 | |
| α-helix | 182-190 | 9 | |
| α-helix | 201-203 | 3 | |
| β-strand | 224-225 | 2 | 149 |
| α-helix | 229-230 | 2 | |
| β-strand | 237-238 | 2 | 149 |
Chain Lf: 4 helices, 4 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 10-20 | 11 | |
| β-strand | 22-25 | 4 | 158 |
| α-helix | 27-36 | 10 | |
| β-strand | 41-45 | 5 | 158 |
| α-helix | 50-63 | 14 | |
| β-strand | 66-70 | 5 | 158 |
| α-helix | 74-80 | 7 | |
| β-strand | 89-94 | 6 | 158 |
71 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| 25S ribosomal RNA (RDN25-1) | LA | RNA | 3396 | Saccharomyces cerevisiae W303 | |
| 60S ribosomal protein L1-A | LB | protein | 217 | Saccharomyces cerevisiae W303 | P0CX43 (AlphaFold model) |
| 18S ribosomal RNA (RDN18-1) | 2 | RNA | 1800 | Saccharomyces cerevisiae W303 | |
| 40S ribosomal protein S0-A | sP | protein | 252 | Saccharomyces cerevisiae W303 | P32905 (AlphaFold model) |
| 40S ribosomal protein S1-A | sQ | protein | 255 | Saccharomyces cerevisiae W303 | P33442 (AlphaFold model) |
| RPS15 isoform 1 | sE | protein | 142 | Saccharomyces cerevisiae W303 | Q01855 (AlphaFold model) |
| 40S ribosomal protein S2 | sR | protein | 254 | Saccharomyces cerevisiae W303 | P25443 |
| 40S ribosomal protein S3 | sA | protein | 240 | Saccharomyces cerevisiae W303 | P05750 |
| 40S ribosomal protein S4-B | sS | protein | 261 | Saccharomyces cerevisiae W303 | P0CX36 |
| 40S ribosomal protein S5 | sB | protein | 225 | Saccharomyces cerevisiae W303 | P26783 |
| 40S ribosomal protein S6-B | sT | protein | 236 | Saccharomyces cerevisiae W303 | P0CX38 |
| 40S ribosomal protein S7-A | sU | protein | 190 | Saccharomyces cerevisiae W303 | P26786 |
72 more molecules are not listed.
Sequence of entity 1 (LA), FASTA
>7ZW0_1 25S ribosomal RNA (RDN25-1) (chains LA)
GUUUGACCUCAAAUCAGGUAGGAGUACCCGCUGAACUUAAGCAUAUCAAUAAGCGGAGGA
AAAGAAACCAACCGGGAUUGCCUUAGUAACGGCGAGUGAAGCGGCAAAAGCUCAAAUUUG
AAAUCUGGUACCUUCGGUGCCCGAGUUGUAAUUUGGAGAGGGCAACUUUGGGGCCGUUCC
UUGUCUAUGUUCCUUGGAACAGGACGUCAUAGAGGGUGAGAAUCCCGUGUGGCGAGGAGU
GCGGUUCUUUGUAAAGUGCCUUCGAAGAGUCGAGUUGUUUGGGAAUGCAGCUCUAAGUGG
GUGGUAAAUUCCAUCUAAAGCUAAAUAUUGGCGAGAGACCGAUAGCGAACAAGUACAGUG
AUGGAAAGAUGAAAAGAACUUUGAAAAGAGAGUGAAAAAGUACGUGAAAUUGUUGAAAGG
GAAGGGCAUUUGAUCAGACAUGGUGUUUUGUGCCCUCUGCUCCUUGUGGGUAGGGGAAUC
UCGCAUUUCACUGGGCCAGCAUCAGUUUUGGUGGCAGGAUAAAUCCAUAGGAAUGUAGCU
UGCCUCGGUAAGUAUUAUAGCCUGUGGGAAUACUGCCAGCUGGGACUGAGGACUGCGACG
UAAGUCAAGGAUGCUGGCAUAAUGGUUAUAUGCCGCCCGUCUUGAAACACGGACCAAGGA
GUCUAACGUCUAUGCGAGUGUUUGGGUGUAAAACCCAUACGCGUAAUGAAAGUGAACGUA
GGUUGGGGCCUCGCAAGAGGUGCACAAUCGACCGAUCCUGAUGUCUUCGGAUGGAUUUGA
GUAAGAGCAUAGCUGUUGGGACCCGAAAGAUGGUGAACUAUGCCUGAAUAGGGUGAAGCC
AGAGGAAACUCUGGUGGAGGCUCGUAGCGGUUCUGACGUGCAAAUCGAUCGUCGAAUUUG
GGUAUAGGGGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCUGCCGAAGUUUCCCU
CAGGAUAGCAGAAGCUCGUAUCAGUUUUAUGAGGUAAAGCGAAUGAUUAGAGGUUCCGGG
GUCGAAAUGACCUUGACCUAUUCUCAAACUUUAAAUAUGUAAGAAGUCCUUGUUACUUAA
UUGAACGUGGACAUUUGAAUGAAGAGCUUUUAGUGGGCCAUUUUUGGUAAGCAGAACUGG
CGAUGCGGGAUGAACCGAACGUAGAGUUAAGGUGCCGGAAUACACGCUCAUCAGACACCA
CAAAAGGUGUUAGUUCAUCUAGACAGCCGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAA
GGAGUGUGUAACAACUCACCGGCCGAAUGAACUAGCCCUGAAAAUGGAUGGCGCUCAAGC
GUGUUACCUAUACUCUACCGUCAGGGUUGAUAUGAUGCCCUGACGAGUAGGCAGGCGUGG
AGGUCAGUGACGAAGCCUAGACCGUAAGGUCGGGUCGAACGGCCUCUAGUGCAGAUCUUG
GUGGUAGUAGCAAAUAUUCAAAUGAGAACUUUGAAGACUGAAGUGGGGAAAGGUUCCACG
UCAACAGCAGUUGGACGUGGGUUAGUCGAUCCUAAGAGAUGGGGAAGCUCCGUUUCAAAG
GCCUGAUUUUAUGCAGGCCACCAUCGAAAGGGAAUCCGGUUAAGAUUCCGGAACCUGGAU
AUGGAUUCUUCACGGUAACGUAACUGAAUGUGGAGACGUCGGCGCGAGCCCUGGGAGGAG
UUAUCUUUUCUUCUUAACAGCUUAUCACCCCGGAAUUGGUUUAUCCGGAGAUGGGGUCUU
AUGGCUGGAAGAGGCCAGCACCUUUGCUGGCUCCGGUGCGCUUGUGACGGCCCGUGAAAA
UCCACAGGAAGGAAUAGUUUUCAUGCCAGGUCGUACUGAUAACCGCAGCAGGUCUCCAAG
GUGAACAGCCUCUAGUUGAUAGAAUAAUGUAGAUAAGGGAAGUCGGCAAAAUAGAUCCGU
AACUUCGGGAUAAGGAUUGGCUCUAAGGGUCGGGUAGUGAGGGCCUUGGUCAGACGCAGC
GGGCGUGCUUGUGGACUGCUUGGUGGGGCUUGCUCUGCUAGGCGGACUACUUGCGUGCCU
UGUUGUAGACGGCCUUGGUAGGUCUCUUGUAGACCGUCGCUUGCUACAAUUAACGAUCAA
CUUAGAACUGGUACGGACAAGGGGAAUCUGACUGUCUAAUUAAAACAUAGCAUUGCGAUG
GUCAGAAAGUGAUGUUGACGCAAUGUGAUUUCUGCCCAGUGCUCUGAAUGUCAAAGUGAA
GAAAUUCAACCAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAA
AUGCCUCGUCAUCUAAUUAGUGACGCGCAUGAAUGGAUUAACGAGAUUCCCACUGUCCCU
AUCUACUAUCUAGCGAAACCACAGCCAAGGGAACGGGCUUGGCAGAAUCAGCGGGGAAAG
AAGACCCUGUUGAGCUUGACUCUAGUUUGACAUUGUGAAGAGACAUAGAGGGUGUAGAAU
AAGUGGGAGCUUCGGCGCCAGUGAAAUACCACUACCUUUAUAGUUUCUUUACUUAUUCAA
UGAAGCGGAGCUGGAAUUCAUUUUCCACGUUCUAGCAUUCAAGGUCCCAUUCGGGGCUGA
UCCGGGUUGAAGACAUUGUCAGGUGGGGAGUUUGGCUGGGGCGGCACAUCUGUUAAACGA
UAACGCAGAUGUCCUAAGGGGGGCUCAUGGAGAACAGAAAUCUCCAGUAGAACAAAAGGG
UAAAAGCCCCCUUGAUUUUGAUUUUCAGUGUGAAUACAAACCAUGAAAGUGUGGCCUAUC
GAUCCUUUAGUCCCUCGGAAUUUGAGGCUAGAGGUGCCAGAAAAGUUACCACAGGGAUAA
CUGGCUUGUGGCAGUCAAGCGUUCAUAGCGACAUUGCUUUUUGAUUCUUCGAUGUCGGCU
CUUCCUAUCAUACCGAAGCAGAAUUCGGUAAGCGUUGGAUUGUUCACCCACUAAUAGGGA
ACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCUACUGAUGAAUGUUA
CCGCAAUAGUAAUUGAACUUAGUACGAGAGGAACAGUUCAUUCGGAUAAUUGGUUUUUGC
GGCUGUCUGAUCAGGCAUUGCCGCGAAGCUACCAUCCGCUGGAUUAUGGCUGAACGCCUC
UAAGUCAGAAUCCAUGCUAGAACGCGGUGAUUUCUUUGCUCCACACAAUAUAGAUGGAUA
CGAAUAAGGCGUCCUUGUGGCGUCGCUGAACCAUAGCAGGCUAGCAACGGUGCACUUGGC
GGAAAGGCCUUGGGUGCUUGCUGGCGAAUUGCAAUGUCAUUUUGCGUGGGGAUAAAUCAU
UUGUAUACGACUUAGAUGUACAACGGGGUAUUGUAAGCAGUAGAGUAGCCUUGUUGUUAC
GAUCUGCUGAGAUUAAGCCUUUGUUGUCUGAUUUGU
Sequence of entity 2 (LB), FASTA
>7ZW0_2 60S ribosomal protein L1-A (chains LB)
MSKITSSQVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQRDKRFSGSLKLPNCPR
PNMSICIFGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQV
PRLLGPQLSKAGKFPTPVSHNDDLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMEEDVLV
NQILMSVNFFVSLLKKNWQNVGSLVVKSSMGPAFRLY
Sequence of entity 3 (2), FASTA
>7ZW0_3 18S ribosomal RNA (RDN18-1) (chains 2)
UAUCUGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUCU
AAGUAUAAGCAAUUUAUACAGUGAAACUGCGAAUGGCUCAUUAAAUCAGUUAUCGUUUAU
UUGAUAGUUCCUUUACUACAUGGUAUAACUGUGGUAAUUCUAGAGCUAAUACAUGCUUAA
AAUCUCGACCCUUUGGAAGAGAUGUAUUUAUUAGAUAAAAAAUCAAUGUCUUCGGACUCU
UUGAUGAUUCAUAAUAACUUUUCGAAUCGCAUGGCCUUGUGCUGGCGAUGGUUCAUUCAA
AUUUCUGCCCUAUCAACUUUCGAUGGUAGGAUAGUGGCCUACCAUGGUUUCAACGGGUAA
CGGGGAAUAAGGGUUCGAUUCCGGAGAGGGAGCCUGAGAAACGGCUACCACAUCCAAGGA
AGGCAGCAGGCGCGCAAAUUACCCAAUCCUAAUUCAGGGAGGUAGUGACAAUAAAUAACG
AUACAGGGCCCAUUCGGGUCUUGUAAUUGGAAUGAGUACAAUGUAAAUACCUUAACGAGG
AACAAUUGGAGGGCAAGUCUGGUGCCAGCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAU
AUUAAAGUUGUUGCAGUUAAAAAGCUCGUAGUUGAACUUUGGGCCCGGUUGGCCGGUCCG
AUUUUUUCGUGUACUGGAUUUCCAACGGGGCCUUUCCUUCUGGCUAACCUUGAGUCCUUG
UGGCUCUUGGCGAACCAGGACUUUUACUUUGAAAAAAUUAGAGUGUUCAAAGCAGGCGUA
UUGCUCGAAUAUAUUAGCAUGGAAUAAUAGAAUAGGACGUUUGGUUCUAUUUUGUUGGUU
UCUAGGACCAUCGUAAUGAUUAAUAGGGACGGUCGGGGGCAUCAGUAUUCAAUUGUCAGA
GGUGAAAUUCUUGGAUUUAUUGAAGACUAACUACUGCGAAAGCAUUUGCCAAGGACGUUU
UCAUUAAUCAAGAACGAAAGUUAGGGGAUCGAAGAUGAUCAGAUACCGUCGUAGUCUUAA
CCAUAAACUAUGCCGACUAGGGAUCGGGUGGUGUUUUUUUAAUGACCCACUCGGCACCUU
ACGAGAAAUCAAAGUCUUUGGGUUCUGGGGGGAGUAUGGUCGCAAGGCUGAAACUUAAAG
GAAUUGACGGAAGGGCACCACCAGGAGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGG
GAAACUCACCAGGUCCAGACACAAUAAGGAUUGACAGAUUGAGAGCUCUUUCUUGAUUUU
GUGGGUGGUGGUGCAUGGCCGUUCUUAGUUGGUGGAGUGAUUUGUCUGCUUAAUUGCGAU
AACGAACGAGACCUUAACCUACUAAAUAGUGGUGCUAGCAUUUGCUGGUUAUCCACUUCU
UAGAGGGACUAUCGGUUUCAAGCCGAUGGAAGUUUGAGGCAAUAACAGGUCUGUGAUGCC
CUUAGACGUUCUGGGCCGCACGCGCGCUACACUGACGGAGCCAGCGAGUCUAACCUUGGC
CGAGAGGUCUUGGUAAUCUUGUGAAACUCCGUCGUGCUGGGGAUAGAGCAUUGUAAUUAU
UGCUCUUCAACGAGGAAUUCCUAGUAAGCGCAAGUCAUCAGCUUGCGUUGAUUACGUCCC
UGCCCUUUGUACACACCGCCCGUCGCUAGUACCGAUUGAAUGGCUUAGUGAGGCCUCAGG
AUCUGCUUAGAGAAGGGGGCAACUCCAUCUCAGAGCGGAGAAUUUGGACAAACUUGGUCA
UUUAGAGGAACUAAAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGGAUCAUUA
Sequence of entity 4 (sP), FASTA
>7ZW0_4 40S ribosomal protein S0-A (chains sP)
MSLPATFDLTPEDAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLA
ARIIAAIPNPEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRL
VIVTDPRSDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLIWYLLARE
VLRLRGALVDRTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAEAT
EWAEENADNVEW
Sequence of entity 5 (sQ), FASTA
>7ZW0_5 40S ribosomal protein S1-A (chains sQ)
MAVGKNKRLSKGKKGQKKRVVDPFTRKEWFDIKAPSTFENRNVGKTLVNKSTGLKSASDA
LKGRVVEVCLADLQGSEDHSFRKIKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKWQTL
IEANVTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGST
LAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEK
GKKVTGFKDEVLETV
Sequence of entity 6 (sE), FASTA
>7ZW0_6 RPS15 isoform 1 (chains sE)
MSQAVNAKKRVFKTHSYRGVDLEKLLEMSTEDFVKLAPARVRRRFARGMTSKPAGFMKKL
RAAKLAAPENEKPAPVRTHMRNMIIVPEMIGSVVGIYNGKAFNQVEIRPEMLGHYLGEFS
ITYTPVRHGRAGATTSRFIPLK
Sequence of entity 7 (sR), FASTA
>7ZW0_7 40S ribosomal protein S2 (chains sR)
MSAPEAQQQKRGGFGGRNRGRPNRRGPRNTEEKGWVPVTKLGRLVKAGKITTIEEIFLHS
LPVKEFQIIDTLLPGLQDEVMNIKPVQKQTRAGQRTRFKAVVVVGDSNGHVGLGIKTAKE
VAGAIRAGIIIAKLSVIPIRRGYWGTNLGQPHSLATKTTGKCGSVTVRLIPAPRGSGIVA
SPAVKKLLQLAGVEDVYTQSNGKTRTLENTLKAAFVAIGNTYGFLTPNLWAEQPLPVSPL
DIYSDEASAQKKRF
Sequence of entity 8 (sA), FASTA
>7ZW0_8 40S ribosomal protein S3 (chains sA)
MVALISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLG
ENGRRINELTLLVQKRFKYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAY
GVVRYVMESGAKGCEVVVSGKLRAARAKAMKFADGFLIHSGQPVNDFIDTATRHVLMRQG
VLGIKVKIMRDPAKSRTGPKALPDAVTIIEPKEEEPILAPSVKDYRPAEETEAQAEPVEA
Sequence of entity 9 (sS), FASTA
>7ZW0_9 40S ribosomal protein S4-B (chains sS)
MARGPKKHLKRLAAPHHWLLDKLSGCYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGRE
VKAILMQRHVKVDGKVRTDTTYPAGFMDVITLDATNENFRLVYDVKGRFAVHRITDEEAS
YKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPNIKVNDTVKIDLASGKITDFIKFDAGKL
VYVTGGRNLGRIGTIVHKERHDGGFDLVHIKDSLDNTFVTRLNNVFVIGEQGKPYISLPK
GKGIKLSIAEERDRRRAQQGL
Sequence of entity 10 (sB), FASTA
>7ZW0_10 40S ribosomal protein S5 (chains sB)
MSDTEAPVEVQEDFEVVEEFTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLVD
YVQVRQPIFVAHTAGRYANKRFRKAQCPIIERLTNSLMMNGRNNGKKLKAVRIIKHTLDI
INVLTDQNPIQVVVDAITNTGPREDTTRVGGGGAARRQAVDVSPLRRVNQAIALLTIGAR
EAAFRNIKTIAETLAEELINAAKGSSTSYAIKKKDELERVAKSNR
Sequence of entity 11 (sT), FASTA
>7ZW0_11 40S ribosomal protein S6-B (chains sT)
MKLNISYPVNGSQKTFEIDDEHRIRVFFDKRIGQEVDGEAVGDEFKGYVFKISGGNDKQG
FPMKQGVLLPTRIKLLLTKNVSCYRPRRDGERKRKSVRGAIVGPDLAVLALVIVKKGEQE
LEGLTDTTVPKRLGPKRANNIRKFFGLSKEDDVRDFVIRREVTKGEKTYTKAPKIQRLVT
PQRLQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLSERKAEKAEIRKRRASSLKA
Sequence of entity 12 (sU), FASTA
>7ZW0_12 40S ribosomal protein S7-A (chains sU)
MSAPQAKILSQAPTELELQVAQAFVELENSSPELKAELRPLQFKSIREIDVAGGKKALAI
FVPVPSLAGFHKVQTKLTRELEKKFQDRHVIFLAERRILPKPSRTSRQVQKRPRSRTLTA
VHDKILEDLVFPTEIVGKRVRYLVGGNKIQKVLLDSKDVQQIDYKLESFQAVYNKLTGKQ
IVFEIPSETH
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| MG | Magnesium ion | Mg | 324 |
| SPD | Spermidine | C7 H19 N3 | 1 |
| ZN | Zinc ion | Zn | 34 |
Primary citation
Sensing of individual stalled 80S ribosomes by Fap1 for nonfunctional rRNA turnover. Li, S., Ikeuchi, K., Kato, M. et al. Mol Cell (2022) 82:3424-3437.e8. DOI 10.1016/j.molcel.2022.08.018 · PubMed
Other PDB entries of the same protein (UniProt P0CX43 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 9DP7 2.38 Å, Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome…
- 8AGX 2.4 Å, Yeast RQC complex in state with the RING domain of Ltn1 in the IN position
- 8BN3 2.4 Å, Yeast 80S, ES7s delta, eIF5A, Stm1 containing
- 8T2X 2.46 Å, Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger…
- 9DOV 2.49 Å, Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome…
- 8AAF 2.5 Å, Yeast RQC complex in state G
- 8V83 2.53 Å, 60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)
- 9T3L 2.55 Å, Crystal structure of the Acl1 ankyrin repeat domain in complex with the second Rpl1 domain
- 8AGT 2.6 Å, Yeast RQC complex in state F
- 8AGV 2.6 Å, Yeast RQC complex in state H
- 8AGW 2.6 Å, Yeast RQC complex in state D
- 8AGZ 2.6 Å, Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position
Browse structure collections
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