8BPO: Rabbit 80S ribosome translating beta-tubulin
Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER). Determined by electron microscopy at 2.8 Å resolution. Released 5 Jul 2023.
- Method
- Electron microscopy
- Resolution
- 2.8 Å
- Organisms
- Oryctolagus cuniculus, Homo sapiens
- Chains
- 51
- Atoms
- 143,326
- Mol. weight
- 2627.75 kDa
- Ligands
- ZN, MG
- Released
- 5 Jul 2023
Explore 8BPO in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
8BPO contains 385 α-helices and 324 β-strands across 48 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain a2: 6 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 12-16 | 5 | |
| α-helix | 22-24 | 3 | |
| α-helix | 37-48 | 12 | |
| α-helix | 54-75 | 22 | |
| α-helix | 91-99 | 9 | |
| α-helix | 106-113 | 8 | |
Chain A2: 11 helices, 17 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 3-5 | 3 | |
| α-helix | 6-9 | 4 | |
| α-helix | 29-32 | 4 | |
| α-helix | 34-38 | 5 | |
| β-strand | 41-50 | 10 | 9 |
| α-helix | 51 | 1 | |
| β-strand | 57-64 | 8 | 9 |
| β-strand | 71-77 | 7 | 9 |
| α-helix | 78 | 1 | |
| β-strand | 79 | 1 | 10 |
| β-strand | 83 | 1 | 11 |
| β-strand | 87-90 | 4 | 9 |
| β-strand | 101-103 | 3 | 9 |
| β-strand | 112-114 | 3 | 9 |
| β-strand | 116 | 1 | 12 |
| β-strand | 126 | 1 | 12 |
| β-strand | 134-140 | 7 | 9 |
| β-strand | 145-149 | 5 | 9 |
| β-strand | 155-159 | 5 | 9 |
| β-strand | 163-166 | 4 | 9 |
| α-helix | 168 | 1 | |
| β-strand | 169 | 1 | 10 |
| α-helix | 174-176 | 3 | |
| α-helix | 182-190 | 9 | |
| α-helix | 201-203 | 3 | |
| β-strand | 224-225 | 2 | 13 |
| α-helix | 229-230 | 2 | |
| β-strand | 237-238 | 2 | 13 |
Chain b2: 4 helices, 4 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 11-24 | 14 | |
| β-strand | 26-29 | 4 | 20 |
| α-helix | 32-40 | 9 | |
| β-strand | 45-48 | 4 | 20 |
| α-helix | 56-67 | 12 | |
| β-strand | 70-73 | 4 | 20 |
| α-helix | 78-84 | 7 | |
| β-strand | 93-98 | 6 | 20 |
Chain B2: 14 helices, 20 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 9-10 | 2 | |
| α-helix | 32-35 | 4 | |
| α-helix | 40-41 | 2 | |
| β-strand | 42-43 | 2 | 14 |
| β-strand | 45-59 | 15 | 15 |
| β-strand | 71-80 | 10 | 15 |
| α-helix | 82-83 | 2 | |
| β-strand | 84-95 | 12 | 16 |
| β-strand | 98-106 | 9 | 16 |
| α-helix | 112-116 | 5 | |
| α-helix | 134-136 | 3 | |
| α-helix | 140-156 | 17 | |
| β-strand | 159-165 | 7 | 16 |
| α-helix | 168-170 | 3 | |
| β-strand | 180-184 | 5 | 16 |
| β-strand | 185-186 | 2 | 14 |
| α-helix | 190-197 | 8 | |
| β-strand | 204-205 | 2 | 16 |
| β-strand | 216-222 | 7 | 15 |
| α-helix | 223-225 | 3 | |
| β-strand | 228-229 | 2 | 17 |
| α-helix | 231-234 | 4 | |
| α-helix | 237-241 | 5 | |
| β-strand | 270-271 | 2 | 17 |
| β-strand | 276-287 | 12 | 15 |
| β-strand | 292-294 | 3 | 18 |
| β-strand | 297-299 | 3 | 18 |
| β-strand | 320 | 1 | 19 |
| β-strand | 324 | 1 | 19 |
| β-strand | 330-334 | 5 | 15 |
| β-strand | 344-349 | 6 | 15 |
| α-helix | 361-363 | 3 | |
| β-strand | 365-368 | 4 | 15 |
| α-helix | 382-389 | 8 | |
Chain c2: 4 helices, 5 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 21-28 | 8 | 24 |
| α-helix | 29-33 | 5 | |
| α-helix | 38-40 | 3 | |
| α-helix | 41-56 | 16 | |
| β-strand | 61-64 | 4 | 24 |
| α-helix | 66-72 | 7 | |
| β-strand | 83-92 | 10 | 24 |
| β-strand | 102-108 | 7 | 24 |
| β-strand | 120 | 1 | 24 |
Chain C2: 23 helices, 10 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 7-11 | 5 | 21 |
| β-strand | 17-23 | 7 | 21 |
| α-helix | 24-25 | 2 | |
| α-helix | 26-29 | 4 | |
| α-helix | 34-44 | 11 | |
| α-helix | 45-48 | 4 | |
| α-helix | 49-51 | 3 | |
| β-strand | 64-66 | 3 | 22 |
| β-strand | 77-79 | 3 | 22 |
| α-helix | 117-129 | 13 | |
| α-helix | 130-132 | 3 | |
| α-helix | 134-138 | 5 | |
| β-strand | 152-154 | 3 | 21 |
| α-helix | 164-173 | 10 | |
| α-helix | 177-185 | 9 | |
| β-strand | 188-189 | 2 | 23 |
| α-helix | 193-197 | 5 | |
| β-strand | 201-202 | 2 | 23 |
| β-strand | 208-211 | 4 | 21 |
| α-helix | 217-221 | 5 | |
| β-strand | 228-231 | 4 | 21 |
| α-helix | 237-240 | 4 | |
| α-helix | 242-244 | 3 | |
| β-strand | 250-253 | 4 | 21 |
| α-helix | 254-257 | 4 | |
| α-helix | 260-263 | 4 | |
| α-helix | 279-282 | 4 | |
| α-helix | 289-293 | 5 | |
| α-helix | 296-299 | 4 | |
| α-helix | 303-305 | 3 | |
| α-helix | 322-328 | 7 | |
| α-helix | 332-337 | 6 | |
| α-helix | 341-360 | 20 | |
Chain D1: 1 helix, 1 β-strand
| Element | Residues | Length | Sheet |
|---|
| α-helix | 4-14 | 11 | |
| β-strand | 26-27 | 2 | 6 |
Chain d2: 7 helices, 4 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 10-12 | 3 | |
| α-helix | 21-22 | 2 | |
| α-helix | 58-60 | 3 | |
| α-helix | 61-63 | 3 | |
| β-strand | 69 | 1 | 28 |
| β-strand | 75-79 | 5 | 28 |
| α-helix | 82-85 | 4 | |
| α-helix | 89-91 | 3 | |
| β-strand | 95-99 | 5 | 28 |
| α-helix | 105-117 | 13 | |
| β-strand | 122 | 1 | 28 |
40 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| 28S ribosomal RNA | A1 | RNA | 4380 | Oryctolagus cuniculus | |
| 5S ribosomal RNA | B1 | RNA | 120 | Oryctolagus cuniculus | |
| 5.8S ribosomal RNA | C1 | RNA | 156 | Oryctolagus cuniculus | |
| Nascent polypeptide-associated complex subunit alpha N-terminal region | D1 | protein | 29 | Oryctolagus cuniculus | |
| 60S ribosomal protein L8 | A2 | protein | 257 | Oryctolagus cuniculus | |
| Ribosomal protein L3 | B2 | protein | 403 | Oryctolagus cuniculus | G1TL06 (AlphaFold model) |
| 60S ribosomal protein L4 | C2 | protein | 425 | Oryctolagus cuniculus | A0A5F9C3C5 (AlphaFold model) |
| Ribosomal_L18_c domain-containing protein | D2 | protein | 297 | Oryctolagus cuniculus | P19949 (AlphaFold model) |
| 60S ribosomal protein L6 | E2 | protein | 291 | Oryctolagus cuniculus | G1SKF7 (AlphaFold model) |
| 60S ribosomal protein L7 | F2 | protein | 247 | Oryctolagus cuniculus | |
| 60S ribosomal protein L7a | G2 | protein | 319 | Oryctolagus cuniculus | G1STW0 |
| 60S ribosomal protein L9 | H2 | protein | 192 | Oryctolagus cuniculus | G1SWI6 |
39 more molecules are not listed.
Sequence of entity 1 (A1), FASTA
>8BPO_1 28S ribosomal RNA (chains A1)
CGCGACCUCAGAUCAGACGUGGCGACCCGCUGAAUUUAAGCAUAUUAGUCAGCGGAGGAA
AAGAAACUAACCAGGAUUCCCUCAGUAACGGCGAGUGAACAGGGAAGAGCCCAGCGCCGA
AUCCCCGCCCCGCGGCGGGGCGCGGGAAAUGUGGCGUACGGAAGACCCACUCCCCGGCGC
CGGGGGGCCCAAGUCCUUCUGAUCGAGGCCCAGCCCGUGGACGGUGUGAGGCCGGUAGCG
GCCCCCGGCGCGCCGGGCCCGGGUCUUCCCGGAGUCGGGUUGCUUGGGAAUGCAGCCCAA
AGCGGGUGGUAAACUCCAUCUAAGGCUAAAUACCGGCACGAGACCGAUAGUCAACAAGUA
CCGUAAGGGAAAGUUGAAAAGAACUUUGAAGAGAGAGUUCAAGAGGGCGUGAAACCGUUA
AGAGGUAAACGGGUGGGGUCCGCGCAGUCCGCCCGGAGGAUUCAACCCGGCGGCGCGGUC
CGGCCGUGCCGGCGGGGCGGAUCUCCCGCUCCCGUCGGCGGGGGACCGCCCCCCGGCCGG
CGACCGGCCGCCGCCGGGCGCAUUUCCACCGCGGCGGUGCGCCGCGACCGGCUCCGGGAC
GGCUGGGAAGGCCCCGGCGGGGAAGGUGGCCCGGGGGCCCCGGGUGUUACAGCCCCGCCC
CGGCAGCAGCAGCUCGCCGAAUCCCGGGGCCGAGGGAGCGAGACCCGUGCGCCGCGCUCU
CCCCCCUCGGGGGGGCCGGGCCACCCCUCCCACGGCGCGACCGCUGGGGCGGACUGUCCA
GUGCGCCCCGGGCGGGUCGCGCCGUCGGGCCCGGGGGGCCACGCGUCCCCCGCGAGCGCA
CGGGGUCGGCGGCGAUGUCGGCUACCCACCCGACCCGUCUUGAAACACGGACCAAGGAGU
CUAACACGUGCGCGAGUCGGGGGCUACGAAAGCCGCCGUGGCGCAAUGAAGGUGAAGGCC
GGCGGCGCGCCGCCGGCCGAGGUGGGAUCCCGAGGCCUUCCAGUCCGCCGAGGGCGCACC
ACCGGCCCGUCUCGCCCGCCGCGCCGGGGAGGUGGAGCACGAGCGCACGUGUUAGGACCC
GAAAGAUGGUGAACUAUGCCUGGGCAGGGCGAAGCCAGAGGAAACUCUGGUGGAGGUCCG
UAGCGGUCCUGACGUGCGAAUCGGUCGUCCGACCUGGGUAUAGGGGCGAAAGACUAAUCG
AACCAUCUAGUAGCUGGUUCCCUCCAAAGUUUCCCUCAGGAUAGCUGGCGCUCUCGCAAC
CCCGCAGUUUUAUCCGGUAAAGCGAAUGAUUAGAGGUCUUGGGGCCGAAACGAUCUCAAC
CUAUUCUCAAACUUUAAAUGGGUAAGAAGCCCGGCUCGCUGGUGUGGAGCCGGGCGUGGA
AUGCGAGUGCCUAGUGGGCCACUUUUGGUAAGCAGAACUGGCGCUGCGGGAUGAACCGAA
CGCCGGGUUAAGGCGCCCGAUGCCGACGCUCAUCAGACCCCAGAAAAGGUGUUGGUUGAU
AUAGACAGCAGGAUGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCA
CCUGCCGAAUCAACUAGCCCUGAAAAUGGAUGGCGCUGGAGCGUCGGGCCCAUACCCGGC
CGUCGCUGGCAGUCGGCAGAGCGAGAAAGAGAGUGGAGCGCGCCGCGGGACUCCCCCGCG
GGGGUCCCGGCCACCCCCCCCGCGGACGCUACGCCGCGACGAGUAGGAGGGCCGCUGCGG
UGAGCCUUGAAGCCUAGGGCGCGGGCCCGGGUGGAGCCGCCGCAGGUGCAGAUCUUGGUG
GUAGUAGCAAAUAUUCAAACGAGAACUUUGAAGGCCGAAGUGGAGAAGGGUUCCAUGUGA
ACAGCAGUUGAACAUGGGUCAGUCGGUCCUGAGAGAUGGGCGAGCGCCGUUCCGAAGGGA
CGGGCGAUGGCCUCCGUUGCCCUCAGCCGAUCGAAAGGGAGUCGGGUUCAGAUCCCCGAA
UCCGGAGUGGCGGAGAUGGGCGCCGCGAGGCGUCCAGUGCGGUAACGCGACCGAUCCCGG
AGAAGCCGGCGGGAGCCCCGGGGAGAGUUCUCUUUUCUUUGUGAAGGGCAGGGCGCCCUG
GAAUGGGUUCGCCCCGAGAGAGGGGCCCGUGCCUUGGAAAGCGUCGCGGUUCCGGCGGCG
UCCGGUGAGCUCUCGCUGGCCCUUGAAAAUCCGGGGGAGAGGGUGUAAAUCUCGCGCCGG
GCCGUACCCAUAUCCGCAGCAGGUCUCCAAGGUGAACAGCCUCUGGCAUGUUGGAACAAU
GUAGGUAAGGGAAGUCGGCAAGCCGGAUCCGUAACUUCGGGAUAAGGAUUGGCUCUAAGG
GCUGGGUCGGUCGGGCUGGGGCGCGAAGCGGGGCUGGGCGCGCGCCGCGGCUGGACGAGG
CGCCGCCGCCCCCCCCACGCCCGGGCGCCCUCCCCCGGCCGGGUCCGCUCCUCGCGCGCG
CACGUGCGCCGUGGCGCGCGCCGCGCGCGCGGCCGAGCCCCGUCUCCCCCCCUCUCCCCU
CCCGGGGCGGGGUGCGGGGAGGGGCGGGCGGGGCCGUCGCUCGCCGCGCGUGCGCGUCGC
UGCGCGUGCGCCGCGCGGGGGUCCGGCGGGCCUCCGGACGGGGGCUCCGGGCACCCGGGC
ACCCGGGGGGCCGGCGGCGGCGGCGACUCUGGACGCGAGCCGGGCCCUUCCCGUGGAUCG
CCCCAGCUGCGGCGGGCGUCGCGGCCGCCCGGGGAGCCCGGCGGGCGCCGCGUGCGCGCG
CGUGCGCGCCCGGGGUCGGGGGGGUGCGAGGCAGGGGAGCCCUCUCCUCCUCCCCCACCC
CGGCGCCGCGGCGCCGCGCGUGCGCGCGCGGUCUCCCCCCGCCGGGUCCGCCCCCGGGGC
CGCGGUUCCGCGCGGCGCCUCGCCUCGGCCGGCGCCUAGCAGCCGACUUAGAACUGGUGC
GGACCAGGGGAAUCCGACUGUUUAAUUAAAACAAAGCAUCGCGAAGGCCCGCGGCGGGUG
UUGACGCGAUGUGAUUUCUGCCCAGUGCUCUGAAUGUCAAAGUGAAGAAAUUCAAUGAAG
CGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAAAUGCCUCGUCAUCU
AAUUAGUGACGCGCAUGAAUGGAUGAACGAGAUUCCCACUGUCCCUACCUACUAUCCAGC
GAAACCACAGCCAAGGGAACGGGCUUGGCGGAAUCAGCGGGGAAAGAAGACCCUGUUGAG
CUUGACUCUAGUCUGGCACGGUGAAGAGACAUGAGAGGUGUAGAAUAAGUGGGAGGCCCC
CGCGCCCUCCCGCCCCCGCGAGGGGCGGGGCGGGGGUGCCGGCCUUGCGGGCCGCCGGUG
AAAUACCACUACUCUUAUCGUUUUUUCACUGACCCGGUGAGGCGGGGGGGCGAGCCCCGA
GGGGCUCUCGCUUCUGGCGCCAAGCGCCCGGCCCCGUCGGUCCGCGCGGGCGGCGGCCGG
GCGCGACCCGCUCCGGGGACAGUGCCAGGUGGGGAGUUUGACUGGGGCGGUACACCUGUC
AAACGGUAACGCAGGUGUCCUAAGGCGAGCUCAGGGAGGACAGAAACCUCCCGUGGAGCA
GAAGGGCAAAAGCUCGCUUGAUCUUGAUUUUCAGUACGAAUACAGACCGUGAAAGCGGGG
CCUCACGAUCCUUCUGACCUUUUGGGUUUUAAGCAGGAGGUGUCAGAAAAGUUACCACAG
GGAUAACUGGCUUGUGGCGGCCAAGCGUUCAUAGCGACGUCGCUUUUUGAUCCUUCGAUG
UCGGCUCUUCCUAUCAUUGUGAAGCAGAAUUCACCAAGCGUUGGAUUGUUCACCCACUAA
UAGGGAACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCUACUGAUGA
UGUGUUGUUGCCAUGGUAAUCCUGCUCAGUACGAGAGGAACCGCAGGUUCAGACAUUUGG
UGUAUGUGCUUGGCUGAGGAGCCAAUGGGGCGAAGCUACCAUCUGUGGGAUUAUGACUGA
ACGCCUCUAAGUCAGAAUCCCGCCCAGGCGGAACGAUAGCGCCGGAGCCUCGGUUGGCCU
CGGAUAGCCGGUCCCCCGCCGUCCCCGCCGGCGGCCCGCGUCGUGCGUCCGCCUCGGCGG
CGAGCGGCCCGCCCCCCGCCGCGCGUUGGGACGGGGUCCGGUGCGGAGAGCCCUUCGUCC
CGGGAAACGGGGCGGCCGGAAAGGGGGCCGCCCUCUCGCCCGUCACGCACCGCACGUUCG
UGGGGAACCUGGCGCUAAACCAUUCGUAGACGACCUGCUUCUGGGUCGGGGUUUCGUACG
UAGCAGAGCAGCUCCCUCGCUGCGAUCUAUUGAAAGUCAGCCCUCGACACAAGGGUUUGU
Sequence of entity 2 (B1), FASTA
>8BPO_2 5S ribosomal RNA (chains B1)
GUCUACGGCCAUACCACCCUGAACGCGCCCGAUCUCGUCUGAUCUCGGAAGCUAAGCAGG
GUCGGGCCUGGUUAGUACUUGGAUGGGAGACCGCCUGGGAAUACCGGGUGCUGUAGGCUU
Sequence of entity 3 (C1), FASTA
>8BPO_3 5.8S ribosomal RNA (chains C1)
CGACUCUUAGCGGUGGAUCACUCGGCUCGUGCGUCGAUGAAGAACGCAGCUAGCUGCGAG
AAUUAAUGUGAAUUGCAGGACACAUUGAUCAUCGACACUUCGAACGCACUUGCGGCCCCG
GGUUCCUCCCGGGGCUACGCCUGUCUGAGCGUCGCU
Sequence of entity 4 (D1), FASTA
>8BPO_4 Nascent polypeptide-associated complex subunit alpha N-terminal region (chains D1)
XXXXXXXXXXLXXXXXPXXXXXXXXXXXX
Sequence of entity 5 (A2), FASTA
>8BPO_5 60S ribosomal protein L8 (chains A2)
MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK
VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKP
GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL
KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA
RRTGRLRGTKTVQEKEN
Sequence of entity 6 (B2), FASTA
>8BPO_6 Ribosomal protein L3 (chains B2)
MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV
DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK
NWHKSKKKAFTKYCKKWQDDAGKRQLDKDFSSMKKYCQVIRVLAHTQMRLLPLRQKKAHL
MEIQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL
PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL
EKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKEEGA
Sequence of entity 7 (C2), FASTA
>8BPO_7 60S ribosomal protein L4 (chains C2)
MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH
QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK
RYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDI
KKVYASQRMRAGKGKMRNRRRIQRRGPCVIYNEDNGIVKAFRNIPGITLLNVTKLNILKL
APGGHVGRFCIWTESAFRKLDDLYGTWRKAASLKSNYNLPMHKMLNTDLSRILKSPEIQR
ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLRVERAAAALAA
KSDPKEAPAKKKPVVGKKVKKPRAVGIKQKKKPVVGRKAAAAKKPAADKKAADKRAGPED
KKPAA
Sequence of entity 8 (D2), FASTA
>8BPO_8 Ribosomal_L18_c domain-containing protein (chains D2)
MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI
ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE
GQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRF
PGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNNVTPDMMEEMY
KKAHAAIRENPVYEKKPKREVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERAAES
Sequence of entity 9 (E2), FASTA
>8BPO_9 60S ribosomal protein L6 (chains E2)
MAGEKAPAAKPDATKKSPAKKADHARGKAKKKTLAEKKPKKGKPHCSRNPVLVRGIGRYS
RSAMYSRKALYKRKYAAPKSRIERKKKREKVLATVTKPVGGDKNGGTRVVKLRKMPRYYP
TEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLSSGLLLVTG
PLSLNRVPLRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEK
EKYEITEQRKVDQKAVDSQILPKIKAVPQLQGYLRSVFALTNGVYPHKLVF
Sequence of entity 10 (F2), FASTA
>8BPO_10 60S ribosomal protein L7 (chains F2)
MEGAEEKKKVPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEY
RQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGT
FVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNTLIARSLGK
YNIICMEDLIHEIYTVGKHFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQIN
RLIRRMN
Sequence of entity 11 (G2), FASTA
>8BPO_11 60S ribosomal protein L7a (chains G2)
MSSYRLGYCMKEERHNLVLCLWSQSPGILNSKCLWPFTNIHLLVGALPREGAGGAWGGGR
SEQLPTCSTTHHDFTWDKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQR
AILYKRLKVPPAINQFTQVLDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGD
VPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCILKGK
ARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSV
ARIAKLEKAKAKELATKLG
Sequence of entity 12 (H2), FASTA
>8BPO_12 60S ribosomal protein L9 (chains H2)
MKTILSNQTVDIPENVDISLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW
WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE
KYIRRVRMRPGVACSVSQAQKDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
VSEKGTVQQADE
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| ZN | Zinc ion | Zn | 5 |
| MG | Magnesium ion | Mg | 214 |
Primary citation
Mechanism of ribosome-associated mRNA degradation during tubulin autoregulation. Hopfler, M., Absmeier, E., Peak-Chew, S.Y. et al. Mol Cell (2023) 83:2290. DOI 10.1016/j.molcel.2023.05.020 · PubMed
Other PDB entries of the same protein (UniProt G1TL06 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 7O7Y 2.2 Å, Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a…
- 7OYD 2.3 Å, Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- 11IQ 2.4 Å, Rabbit 80S with eEF2,eIF5A and SERBP1
- 7O7Z 2.4 Å, Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a…
- 8SCB 2.5 Å, Terminating ribosome with SRI-41315
- 9MR4 2.65 Å, NAC: Ribosome nascent chain complex(Oxa1L)
- 9RHU 2.65 Å, Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A…
- 8RJB 2.69 Å, Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in…
- 8VVQ 2.7 Å, Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from…
- 8RJD 2.79 Å, Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in…
- 8B6C 2.79 Å, Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative…
- 6SGC 2.8 Å, Rabbit 80S ribosome stalled on a poly(A) tail
Browse structure collections
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