8GHL: The Hir complex core

the Hir complex core. Determined by electron microscopy at 2.96 Å resolution. Released 17 Jul 2024.

Method
Electron microscopy
Resolution
2.96 Å
Organism
Saccharomyces cerevisiae
Chains
8
Atoms
30,648
Mol. weight
966.01 kDa
Released
17 Jul 2024

Explore 8GHL in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

8GHL contains 168 α-helices and 157 β-strands across 8 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 8 helices, 23 β-strands

ElementResiduesLengthSheet
α-helix413-4164
α-helix419-43517
α-helix545-5506
β-strand55111
α-helix557-5593
β-strand56312
β-strand565-56733
β-strand62114
α-helix627-6315
β-strand64015
β-strand652-65766
β-strand662-66876
α-helix673-6753
α-helix679-6846
β-strand687-69266
β-strand697-70376
β-strand707-71267
β-strand718-72367
β-strand727-73267
β-strand73717
β-strand742-74327
β-strand748-75478
β-strand757-76268
β-strand766-77168
β-strand776-78388
α-helix785-7884
β-strand79319
β-strand803-81085
β-strand815-82175
β-strand825-82955
β-strand836-83835
Chain B: 17 helices, 25 β-strands
ElementResiduesLengthSheet
β-strand441-442214
α-helix443-4453
β-strand48619
α-helix488-4914
β-strand493115
β-strand495-49733
β-strand499-500214
α-helix501-5033
β-strand505-508416
β-strand516-521616
α-helix5301
β-strand531-539916
β-strand542-5511016
β-strand555-56065
β-strand565-56955
β-strand573-57755
β-strand58315
α-helix586-5872
β-strand588-58925
β-strand594-600717
β-strand603-608617
β-strand612-617617
β-strand622-623217
β-strand628-629217
α-helix631-6344
β-strand646-64723
α-helix649-6502
β-strand651-65662
β-strand65711
β-strand662-66652
β-strand671-67552
β-strand680-68562
α-helix689-6924
α-helix711-7144
α-helix719-72911
α-helix735-75016
α-helix753-76412
α-helix772-79019
α-helix794-81118
α-helix814-82512
α-helix841-85414
α-helix861-87010
Chain C: 16 helices, 22 β-strands
ElementResiduesLengthSheet
β-strand491115
β-strand495-496218
α-helix500-5023
β-strand505-508419
β-strand516-521619
β-strand531-537719
α-helix539-5413
β-strand544-551819
β-strand555-56062
β-strand565-56952
β-strand573-57752
β-strand58312
α-helix586-5872
β-strand588-58922
β-strand594-600720
β-strand603-608620
β-strand612-617620
β-strand622-623220
β-strand628-629220
α-helix631-6333
α-helix6351
β-strand64314
β-strand646-647218
β-strand653-65647
β-strand662-66547
β-strand671-67557
β-strand680-68567
α-helix689-6924
α-helix702-7043
α-helix735-74410
α-helix749-76416
α-helix772-79019
α-helix794-81118
α-helix814-82512
α-helix835-8373
α-helix840-85314
α-helix854-8563
α-helix861-87010
Chain D: 44 helices, 8 β-strands
ElementResiduesLengthSheet
α-helix12-4231
α-helix46-5712
α-helix75-9925
α-helix107-12519
α-helix127-1293
α-helix130-14213
α-helix146-15712
α-helix163-1675
α-helix176-19116
α-helix201-2055
α-helix208-2103
α-helix218-2203
α-helix223-23917
β-strand244-249637
α-helix254-26411
α-helix270-2756
α-helix280-2834
β-strand290-295637
α-helix377-39317
α-helix402-4109
α-helix421-43212
α-helix436-4427
α-helix454-4585
β-strand482138
α-helix488-49811
α-helix502-51312
β-strand516-518339
β-strand523-524239
α-helix525-5284
β-strand530138
α-helix533-55624
α-helix562-58625
α-helix594-61724
α-helix623-64018
α-helix647-66115
β-strand668140
α-helix677-6782
β-strand679140
α-helix681-69717
α-helix698-7003
α-helix709-7157
α-helix716-7205
α-helix721-7277
α-helix738-7392
α-helix740-7445
α-helix749-76315
α-helix769-78719
α-helix790-7934
α-helix797-82428
α-helix836-86126
α-helix868-8714
α-helix873-90129
Chain G: 10 helices, 23 β-strands
ElementResiduesLengthSheet
α-helix413-4153
α-helix419-43517
α-helix545-5506
β-strand551121
α-helix557-5593
β-strand563122
β-strand565-567323
β-strand621124
α-helix627-6315
β-strand640125
α-helix645-6473
β-strand651-657726
β-strand662-668726
α-helix673-6753
α-helix679-6846
α-helix6861
β-strand687-692626
β-strand697-703726
β-strand707-712627
β-strand718-723627
β-strand727-732627
β-strand737127
β-strand742-743227
β-strand748-754728
β-strand757-762628
β-strand767-771528
β-strand776-780528
α-helix785-7884
β-strand804-810725
β-strand815-820625
β-strand825125
β-strand827-830425
β-strand835-838425
Chain H: 18 helices, 26 β-strands
ElementResiduesLengthSheet
β-strand441-442229
α-helix443-4453
β-strand481130
α-helix488-4914
β-strand493131
β-strand495-497323
β-strand499-500229
α-helix5011
β-strand502130
α-helix5031
β-strand505-508432
β-strand516-521632
α-helix5301
β-strand531-539932
β-strand542-5511032
β-strand555-560625
β-strand565-569525
β-strand573-577525
β-strand583125
α-helix586-5872
β-strand588-589225
β-strand594-600733
β-strand603-608633
β-strand612-617633
β-strand622-623233
β-strand628-629233
β-strand646-647223
β-strand651-656622
β-strand657121
β-strand662-666522
β-strand671-674422
β-strand681-685522
α-helix689-6924
α-helix711-7144
α-helix719-72911
α-helix735-75016
α-helix753-76412
α-helix772-79019
α-helix794-81118
α-helix814-82512
α-helix8291
α-helix841-85414
α-helix858-8603
α-helix861-87111
Chain I: 13 helices, 22 β-strands
ElementResiduesLengthSheet
β-strand491131
β-strand495-496234
α-helix500-5023
β-strand505-508435
β-strand516-521635
β-strand531-537735
α-helix539-5413
β-strand544-551835
β-strand557-560422
β-strand565-568422
β-strand573-577522
β-strand583122
α-helix586-5872
β-strand588-589222
β-strand594-600736
β-strand603-608636
β-strand612-617636
β-strand622-623236
β-strand628-629236
α-helix631-6333
α-helix636-6394
β-strand643124
β-strand646-647234
β-strand651-656627
β-strand662-666527
β-strand671-675527
β-strand680-685627
α-helix687-6926
α-helix735-7439
α-helix749-76416
α-helix772-79019
α-helix794-81118
α-helix814-82512
α-helix841-85414
α-helix862-8709
Chain J: 42 helices, 8 β-strands
ElementResiduesLengthSheet
α-helix12-4231
α-helix46-5611
α-helix75-9925
α-helix100-1023
α-helix105-12521
α-helix130-14213
α-helix146-15712
α-helix160-1667
α-helix176-19116
α-helix202-2054
α-helix223-23917
α-helix242-2432
β-strand244-249610
α-helix254-26411
α-helix270-2756
α-helix280-2834
β-strand290-295610
α-helix377-39317
α-helix402-41110
α-helix421-43212
α-helix436-4427
α-helix454-4585
α-helix464-4663
β-strand481111
α-helix482-4843
α-helix486-49813
α-helix502-51413
β-strand516-518312
β-strand523-524212
α-helix525-5284
β-strand529111
α-helix533-54513
α-helix547-55610
α-helix562-58625
α-helix594-61724
α-helix623-64018
α-helix647-66115
β-strand668113
α-helix677-6782
β-strand679113
α-helix681-70222
α-helix709-72719
α-helix738-7447
α-helix749-76416
α-helix769-78719
α-helix790-7934
α-helix797-82428
α-helix836-86126
α-helix868-8714
α-helix873-90129

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
Protein HIR1A, Gprotein840Saccharomyces cerevisiaeP32479 (AlphaFold model)
Histone transcription regulator 3D, Jprotein1648Saccharomyces cerevisiaeP47171 (AlphaFold model)
Protein HIR2B, C, H, Iprotein875Saccharomyces cerevisiaeP32480 (AlphaFold model)
Sequence of entity 1 (A, G), FASTA
>8GHL_1 Protein HIR1 (chains A, G)
MKVVKFPWLAHREESRKYEIYTVDVSHDGKRLATGGLDGKIRIWSIDSILRCMELESLTP
EIPLPQDLQMPLCSMSRHTGSITCVKFSPDGKYLASGSDDRILLIWALDEEQSSQPAFGS
EHEREHWTVRKRLVAHDNDIQDICWAPDSSILVTVGLDRSVIVWNGSTFEKLKRFDVHQS
LVKGVVFDPANKYFATTSDDRTMKIFRYHKTGDISFTIEHIITEPFKESPLTTYFRRPSW
SPDGQHIAVPNATNGPVSSVAIVNRGTWDTNVSLIGHDAPTEVARFNPRLFERNAGVKQK
KDDDPENALVGQNDDKVHHFDKNIDSVVATAGQDKSLAVWSTSRPRPILVAFDIANKSIT
DMSWNPDGSLLFVASLDSSITLFKFENNELGKPIPLEKNMEQLYRYGVDKDSLDFPESIN
QLLLEDQTKSFKHTKISTSKLGENHPTLATNSASNQKDNNDASVSRSEHINILIPKRKKD
AILNKAVTLKSGKKRVAPTLISTSSSSPFSNGIKKPTLDSKRIENNVKSSTKTINSKNTL
LNVPEGVEKKISISSFPLPRLGIHSLIMGTKERSAWKISNSELENDDADNAGGKGSDGTS
NSIDDIAVLSEEENDFHRMTLNAKLTQEKIWSEEPTTRCLLQSDVIPDTDVVVLEGGSLD
DIAVLEIRNGVERSIQFDSEALLDNPTRILGYQGGKRTIETFIPEVIICAIGSKDCKCWC
LASANGSIYILSYNGQQRIPKICLGHKVIKMVTSSKYLLVLTERGLFFAWDLLDLKLVLR
NVPILPILNGQPIHGNKVRINKVIKCFRLDGSSCDLLLEVGDPKNVYKWTKDLGCWSLYK
Sequence of entity 2 (D, J), FASTA
>8GHL_2 Histone transcription regulator 3 (chains D, J)
MSMFNALNSNIEGEQYEAEEHSRELQIEQSFNILQDALIDLKNKDFEKSDSKFQELFQID
VVKPDRWGMYRNSSPTLDNLRYLCYRNRGMYYHLYLENNYERLNSQELVNCILKAVENLV
ESIQHSDADFAVTDLLARIFKSFNSVKLERLISEYEFTKQENLSLLLGRHRKFLLNDLTL
MMNNYVELTNKLLVPNLSDNTIFERYHLEKYKDIKPEPLAFGPILSRISEMKKQDEEIMK
KLDVFNVTLNEESWDEVAKALKNLLPSVKTSSLIGRNMDPYNEIEEPIEAVKFELSEAIN
NTPSLDRESERQEEEQDNESVRADDKSGNLAPSDIQTNEEARPNKRTDEHIDSTKPLQRS
SKRFKEREQENSKELVMDVHKRFFGEFNTLLSYIHILPFCDFDTFASKFIIGSSDKQPEK
FIPYTDLYECLKSWSSRYTDIFNQNDYLSSGSNENEELFQLNALLKSNAFDDKESFPRYL
NDLDSDHIRSFISEVNAGNLHFHQVRLKLLFKLLGTYDEGNGRRLIIDYLWESQLLKIVL
WFVFGIESNIFALINKNKRQCKYLALSIYELLVNHLGNIVEEITNKRIQGHKSADLKSQR
NKVEKRIRSWHTLLEQIADEKDKELYVHFQWTHYCFLQYTCDIVDSRLSETLTSLENTIK
DSDSSLDIAYPNYRHIPALNLNTVQSQKRKIRIIQNITVEDISEDTNSDTHSENHLETLE
KVLLHILHPSTNHSNIDEEMVSFIFNSPFLLKIRLWGVLFSSYVKKSSIQDVQRIYFHVL
DFMKGALTSPVYKESNPHGRHQMLLTVLTAIGYLSSQLTAILNSNRWESSDFVLEDYMFE
KLLQTFFFFYTVLFYESSAVNDVSNKSFFKRASKSSGKMKDIMIDLATLILYYYDLQAKL
RTPAEQGIETTELIWSLHTLFGHFHFCDASNGKFLDLAEKLLCQFINNDSFLQLKQILWC
RYHYAIASDNFSPDLHDTKAVEMEKIHSLPLGTYLIKLQYQNKNPYLSSSKTTLKQIMDN
IIEKIGDPSTLDNHIISRNSFLLNEYLSRPITADLLKHTFSGATSLYLTSPNDELQQGMT
AGLFYVSSLQSLGLYKMRKKSMQARPSELDSIIRMLKNDIIYNTNRFESWILLGKCYSYI
VEDDLIWTSDKITVPEKKDVIALTQRKAILCYLMAISIYYSKLDRTIDDKKIILEALDDL
GSMLISGYYNPMNKLCFSWKSSAENTMRLSETGEVVMEKTKKITTISDFNIEQSIFLCFN
RACSLSGDIKSQDDVFVLNWSSFYNLAKFFFKTDGGNNCKLVAKYITQGCQIAYESSPAK
DPIIEPHYLLVNACYKWVKRGVIGVNEALTLLSKDNQFFQEQEEFWVNDEGLAWDYQEKF
FFDKIIRLLRHLLSVDKKKWQHRPRYRIARILFDDLGDVNGALEEMDSLISAKSINKNLV
NIWKPDFERPGKHFIYTYQYLVLYLDLLFAIKDFNTTGLVIKKLRRFGSGTVNVNELLER
AINVYTQSAKIKLQLQDKSYVEQILPTLNYQEFLKISEQLNQVFDQGKYPEEISSGLKLA
FQLKKGHSGIAFDSVCLGIYFEYLYFPLARQDQSLTDVNDENNPALPSSGSVTSKSTPDP
TSKPSAIKKRVTKKEVFDRVRLLVDKIT
Sequence of entity 3 (B, C, H, I), FASTA
>8GHL_3 Protein HIR2 (chains B, C, H, I)
MRLLKYPLDIHNEQVNALAALGPYIILAGSGGHVMAWRQQQLVDTAFDRVMIKDLKPEVS
FQVDQDTTGDIFFITGDLETLYIGSEHRLWGYSGWLCRDTNNINSVEKMNSKLLFECKSP
STITDVKYDINLGILFVLLSNENKILLFRHKTFDKLSEITIDKASKPITGIIDPTGQTFT
VMTSDRSILVYQINKTGTHKLINKLTQHVQMYPLHYRISMSPQADILPVINSVKGVPNNA
TSCTALLDRNNNYKVTKTLVTPSSNGCRVLVYSPAFYEKPNLKKGTSTRYNLIATSGSTD
GTILVWNTKRMKPLFNALQVSSTAINDMSWSQDGFTLFAISNDATLYTFAFQEKDLGVAL
PQTEIKSLQEVNKKLPKLEEPLAEQIPKSFPENIKLEESASAAPIPNDIGRSAVGKKPTK
KKTANNQTNGIKTIQSTSMEFNTPSYTVPRDLKRKPKEATPSNIAPGSKKQKKELQPIDF
LDTGLLLPNTSFSRIRLATPKIRSTFKYSPINNPNLILDVKNGSGNEQRPTIVKLTSKVL
DQDQVLFQDFIPKLITICTAGDTFWSFCSEDGSIYIYSDSGRKLMAPLVLGVSISFLEAC
GTYLLCLTSIGELYCWNIEQKKLAFPTNTIYPLLNPSLRYSDDILTRAENITLCSITKKG
VPLVTLSNGDGYLFDKNMETWLLVSDGWWAYGSQYWDTTNTTGLSSSKANTDSFNGSESN
INEIVSDIKNDNQSIINFLECKTNDELNRKGRIKNLQRFARTILMKEGFENMEEIVTLSH
LENKILISIRLEEPEEFSKLMMVYCIRLSELGYMDRLNDVFQWLYDDLPISGTGSAFADK
DFKRNLLKKILIACGDIRQVQRVTTRYAKEMNIIS

Primary citation

Structure of the Hir histone chaperone complex. Kim, H.J., Szurgot, M.R., van Eeuwen, T. et al. Mol Cell (2024) 84:2601-2617.e12. DOI 10.1016/j.molcel.2024.05.031 · PubMed

Other PDB entries of the same protein (UniProt P32479 (AlphaFold model), which also has an AlphaFold model), best resolution first:

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