8JDL: 60S ribosomal protein L8
Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state). Determined by electron microscopy at 2.42 Å resolution. Released 6 Dec 2023.
- Method
- Electron microscopy
- Resolution
- 2.42 Å
- Organism
- Homo sapiens
- Chains
- 79
- Atoms
- 207,902
- Mol. weight
- 3791.57 kDa
- Ligands
- MG, GAL, ZN
- Released
- 6 Dec 2023
Explore 8JDL in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
8JDL contains 505 α-helices and 525 β-strands across 73 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain 0: 9 helices, 10 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 7-28 | 22 | |
| β-strand | 37-40 | 4 | 164 |
| β-strand | 46-50 | 5 | 164 |
| α-helix | 55-58 | 4 | |
| α-helix | 66-77 | 12 | |
| α-helix | 79-80 | 2 | |
| β-strand | 84-88 | 5 | 164 |
| α-helix | 90-91 | 2 | |
| α-helix | 94-96 | 3 | |
| α-helix | 98-110 | 13 | |
| α-helix | 115-129 | 15 | |
| β-strand | 133-140 | 8 | 165 |
| β-strand | 148-155 | 8 | 165 |
| β-strand | 168-169 | 2 | 165 |
| β-strand | 172-176 | 5 | 165 |
| β-strand | 181-185 | 5 | 165 |
| β-strand | 188-189 | 2 | 165 |
| α-helix | 190-191 | 2 | |
| β-strand | 210 | 1 | 166 |
Chain 1: 8 helices, 21 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 9-10 | 2 | 3 |
| β-strand | 27-28 | 2 | 3 |
| α-helix | 29-32 | 4 | |
| α-helix | 38-40 | 3 | |
| β-strand | 43 | 1 | 4 |
| α-helix | 44-49 | 6 | |
| α-helix | 58-67 | 10 | |
| β-strand | 70-72 | 3 | 5 |
| β-strand | 83 | 1 | 4 |
| β-strand | 89-92 | 4 | 5 |
| β-strand | 98-100 | 3 | 5 |
| β-strand | 102-103 | 2 | 6 |
| β-strand | 109-110 | 2 | 6 |
| α-helix | 111 | 1 | |
| β-strand | 113 | 1 | 5 |
| α-helix | 118-120 | 3 | |
| β-strand | 121-125 | 5 | 7 |
| β-strand | 126-131 | 6 | 8 |
| β-strand | 137-141 | 5 | 8 |
| β-strand | 146-148 | 3 | 8 |
| β-strand | 159-163 | 5 | 7 |
| β-strand | 168-173 | 6 | 7 |
| β-strand | 180-182 | 3 | 9 |
| β-strand | 192-199 | 8 | 9 |
| β-strand | 207-211 | 5 | 9 |
| β-strand | 217-221 | 5 | 9 |
| α-helix | 222-224 | 3 | |
| β-strand | 227 | 1 | 9 |
| α-helix | 248-262 | 15 | |
Chain 2: 9 helices, 2 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 36-39 | 4 | |
| α-helix | 62-65 | 4 | |
| α-helix | 68-75 | 8 | |
| α-helix | 80-82 | 3 | |
| α-helix | 86-103 | 18 | |
| α-helix | 108-119 | 12 | |
| β-strand | 123-127 | 5 | 20 |
| β-strand | 136-141 | 6 | 20 |
| α-helix | 143-162 | 20 | |
| α-helix | 169-182 | 14 | |
| α-helix | 188-202 | 15 | |
Chain 3: 4 helices, 14 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 2-7 | 6 | 25 |
| β-strand | 12-17 | 6 | 25 |
| β-strand | 30 | 1 | 26 |
| β-strand | 35-38 | 4 | 25 |
| β-strand | 48-52 | 5 | 25 |
| β-strand | 56-57 | 2 | 25 |
| β-strand | 62 | 1 | 25 |
| β-strand | 63 | 1 | 27 |
| β-strand | 72-77 | 6 | 27 |
| β-strand | 93-98 | 6 | 27 |
| β-strand | 102 | 1 | 26 |
| β-strand | 106-115 | 10 | 25 |
| α-helix | 138-144 | 7 | |
| β-strand | 160-162 | 3 | 28 |
| β-strand | 170-172 | 3 | 28 |
| α-helix | 174-176 | 3 | |
| α-helix | 182-233 | 52 | |
| α-helix | 234-236 | 3 | |
Chain 4: 8 helices, 8 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 21-27 | 7 | |
| β-strand | 47-49 | 3 | 30 |
| β-strand | 52 | 1 | 30 |
| β-strand | 58-64 | 7 | 30 |
| α-helix | 66-68 | 3 | |
| α-helix | 69-73 | 5 | |
| α-helix | 76-86 | 11 | |
| β-strand | 90-96 | 7 | 30 |
| α-helix | 115-117 | 3 | |
| α-helix | 118-120 | 3 | |
| α-helix | 122-133 | 12 | |
| β-strand | 139-142 | 4 | 31 |
| β-strand | 145-146 | 2 | 31 |
| β-strand | 152-158 | 7 | 31 |
| α-helix | 170-181 | 12 | |
| β-strand | 184-188 | 5 | 31 |
Chain 5: 6 helices, 9 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 37-38 | 2 | 35 |
| β-strand | 42-48 | 7 | 35 |
| β-strand | 52-60 | 9 | 35 |
| β-strand | 62-66 | 5 | 36 |
| β-strand | 73-83 | 11 | 36 |
| α-helix | 88-92 | 5 | |
| β-strand | 95 | 1 | 35 |
| β-strand | 101-105 | 5 | 36 |
| α-helix | 107-117 | 11 | |
| α-helix | 130-136 | 7 | |
| α-helix | 146-152 | 7 | |
| α-helix | 163-168 | 6 | |
| β-strand | 170-175 | 6 | 36 |
| β-strand | 187-189 | 3 | 36 |
| α-helix | 193-205 | 13 | |
Chain 6: 8 helices, 6 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 22-35 | 14 | |
| α-helix | 40-62 | 23 | |
| α-helix | 68-84 | 17 | |
| α-helix | 94-97 | 4 | |
| α-helix | 102-106 | 5 | |
| β-strand | 109 | 1 | 43 |
| α-helix | 110-116 | 7 | |
| α-helix | 123-131 | 9 | |
| β-strand | 135-136 | 2 | 44 |
| β-strand | 137 | 1 | 45 |
| β-strand | 140 | 1 | 45 |
| β-strand | 148 | 1 | 43 |
| β-strand | 158-159 | 2 | 44 |
| α-helix | 172-180 | 9 | |
Chain 7: 4 helices, 5 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 5-18 | 14 | |
| β-strand | 20-24 | 5 | 53 |
| β-strand | 31 | 1 | 54 |
| α-helix | 37-39 | 3 | |
| β-strand | 41 | 1 | 54 |
| α-helix | 42-55 | 14 | |
| β-strand | 58-62 | 5 | 53 |
| β-strand | 66-71 | 6 | 53 |
| α-helix | 73-83 | 11 | |
65 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| mRNA | A | RNA | 14 | Homo sapiens | |
| tRNA (Tyr) | B | RNA | 76 | Homo sapiens | |
| 28S ribosomal RNA | D | RNA | 5070 | Homo sapiens | |
| 5S ribosomal RNA | E | RNA | 120 | Homo sapiens | |
| 5.8S ribosomal RNA | F | RNA | 156 | Homo sapiens | |
| 60S ribosomal protein L8 | G | protein | 257 | Homo sapiens | P62917 (AlphaFold model) |
| 60S ribosomal protein L3 | H | protein | 403 | Homo sapiens | P39023 (AlphaFold model) |
| 60S ribosomal protein L4 | I | protein | 427 | Homo sapiens | P36578 (AlphaFold model) |
| 60S ribosomal protein L5 | J | protein | 297 | Homo sapiens | P46777 (AlphaFold model) |
| 60S ribosomal protein L6 | K | protein | 288 | Homo sapiens | Q02878 |
| 60S ribosomal protein L7 | L | protein | 248 | Homo sapiens | P18124 |
| 60S ribosomal protein L7a | M | protein | 266 | Homo sapiens | P62424 |
67 more molecules are not listed.
Sequence of entity 1 (A), FASTA
>8JDL_1 mRNA (chains A)
UUAUUAUUAUUAUU
Sequence of entity 2 (B), FASTA
>8JDL_2 tRNA (Tyr) (chains B)
CCUUCGAUAGCUCAGUUGGXAGAGCGGAGGACUXUAGAXCCUUAGGUCGCUGGUUCGAUU
CCGGCUCGAAGGACCA
Sequence of entity 3 (D), FASTA
>8JDL_3 28S ribosomal RNA (chains D)
CGCGACCUCAGAUCAGACGUGGCGACCCGCUGAAUUUAAGCAUAUUAGUCAGCGGAGGAG
AAGAAACUAACCAGGAUUCCCUCAGUAACGGCGAGUGAACAGGGAAGAGCCCAGCGCCGA
AUCCCCGCCCCGCGGCGGGGCGCGGGACAUGUGGCGUACGGAAGACCCGCUCCCCGGCGC
CGCUCGUGGGGGGCCCAAGUCCUUCUGAUCGAGGCCCAGCCCGUGGACGGUGUGAGGCCG
GUAGCGGCCCCCGGCGCGCCGGGCCCGGGUCUUCCCGGAGUCGGGUUGCUUGGGAAUGCA
GCCCAAAGCGGGUGGUAAACUCCAUCUAAGGCUAAAUACCGGCACGAGACCGAUAGUCAA
CAAGUACCGUAAGGGAAAGUUGAAAAGAACUUUGAAGAGAGAGUUCAAGAGGGCGUGAAA
CCGUUAAGAGGUAAACGGGUGGGGUCCGCGCAGUCCGCCCGGAGGAUUCAACCCGGCGGC
GGGUCCGGCCGUGUCGGCGGCCCGGCGGAUCUUUCCCGCCCCCCGUUCCUCCCGACCCCU
CCACCCGCCCUCCCUUCCCCCGCCGCCCCUCCUCCUCCUCCCCGGAGGGGGCGGGCUCCG
GCGGGUGCGGGGGUGGGCGGGCGGGGCCGGGGGUGGGGUCGGCGGGGGACCGUCCCCCGA
CCGGCGACCGGCCGCCGCCGGGCGCAUUUCCACCGCGGCGGUGCGCCGCGACCGGCUCCG
GGACGGCUGGGAAGGCCCGGCGGGGAAGGUGGCUCGGGGGGCCCCGUCCGUCCGUCCGUC
CGUCCUCCUCCUCCCCCGUCUCCGCCCCCCGGCCCCGCGUCCUCCCUCGGGAGGGCGCGC
GGGUCGGGGCGGCGGCGGCGGCGGCGGUGGCGGCGGCGGCGGCGGCGGCGGGACCGAAAC
CCCCCCCGAGUGUUACAGCCCCCCCGGCAGCAGCACUCGCCGAAUCCCGGGGCCGAGGGA
GCGAGACCCGUCGCCGCGCUCUCCCCCCUCCCGGCGCCCACCCCCGCGGGGAAUCCCCCG
CGAGGGGGGUCUCCCCCGCGGGGGCGCGCCGGCGUCUCCUCGUGGGGGGGCCGGGCCACC
CCUCCCACGGCGCGACCGCUCUCCCACCCCUCCUCCCCGCGCCCCCGCCCCGGCGACGGG
GGGGGUGCCGCGCGCGGGUCGGGGGGCGGGGCGGACUGUCCCCAGUGCGCCCCGGGCGGG
UCGCGCCGUCGGGCCCGGGGGAGGUUCUCUCGGGGCCACGCGCGCGUCCCCCGAAGAGGG
GGACGGCGGAGCGAGCGCACGGGGUCGGCGGCGACGUCGGCUACCCACCCGACCCGUCUU
GAAACACGGACCAAGGAGUCUAACACGUGCGCGAGUCGGGGGCUCGCACGAAAGCCGCCG
UGGCGCAAUGAAGGUGAAGGCCGGCGCGCUCGCCGGCCGAGGUGGGAUCCCGAGGCCUCU
CCAGUCCGCCGAGGGCGCACCACCGGCCCGUCUCGCCCGCCGCGCCGGGGAGGUGGAGCA
CGAGCGCACGUGUUAGGACCCGAAAGAUGGUGAACUAUGCCUGGGCAGGGCGAAGCCAGA
GGAAACUCUGGUGGAGGUCCGUAGCGGUCCUGACGUGCAAAUCGGUCGUCCGACCUGGGU
AUAGGGGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCCUCCGAAGUUUCCCUCAG
GAUAGCUGGCGCUCUCGCAGACCCGACGCACCCCCGCCACGCAGUUUUAUCCGGUAAAGC
GAAUGAUUAGAGGUCUUGGGGCCGAAACGAUCUCAACCUAUUCUCAAACUUUAAAUGGGU
AAGAAGCCCGGCUCGCUGGCGUGGAGCCGGGCGUGGAAUGCGAGUGCCUAGUGGGCCACU
UUUGGUAAGCAGAACUGGCGCUGCGGGAUGAACCGAACGCCGGGUUAAGGCGCCCGAUGC
CGACGCUCAUCAGACCCCAGAAAAGGUGUUGGUUGAUAUAGACAGCAGGACGGUGGCCAU
GGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCACCUGCCGAAUCAACUAGCCCUGA
AAAUGGAUGGCGCUGGAGCGUCGGGCCCAUACCCGGCCGUCGCCGGCAGUCGAGAGUGGA
CGGGAGCGGCGGCGGCGGCGCGCGCGCGCGCGCGUGUGGUGUGCGUCGGAGGGCGGCGGC
GGCGGCGGCGGCGGGGGUGUGGGGUCCUUCCCCCGCCCCCCCCCCCACGCCUCCUCCCCU
CCUCCCGCCCACGCCCCGCUCCCCGCCCCCGGAGCCCCGCGGACGCUACGCCGCGACGAG
UAGGAGGGCCGCUGCGGUGAGCCUUGAAGCCUAGGGCGCGGGCCCGGGUGGAGCCGCCGC
AGGUGCAGAUCUUGGUGGUAGUAGCAAAUAUUCAAACGAGAACUUUGAAGGCCGAAGUGG
AGAAGGGUUCCAUGUGAACAGCAGUUGAACAUGGGUCAGUCGGUCCUGAGAGAUGGGCGA
GCGCCGUUCCGAAGGGACGGGCGAUGGCCUCCGUUGCCCUCGGCCGAUCGAAAGGGAGUC
GGGUUCAGAUCCCCGAAUCCGGAGUGGCGGAGAUGGGCGCCGCGAGGCGUCCAGUGCGGU
AACGCGACCGAUCCCGGAGAAGCCGGCGGGAGCCCCGGGGAGAGUUCUCUUUUCUUUGUG
AAGGGCAGGGCGCCCUGGAAUGGGUUCGCCCCGAGAGAGGGGCCCGUGCCUUGGAAAGCG
UCGCGGUUCCGGCGGCGUCCGGUGAGCUCUCGCUGGCCCUUGAAAAUCCGGGGGAGAGGG
UGUAAAUCUCGCGCCGGGCCGUACCCAUAUCCGCAGCAGGUCUCCAAGGUGAACAGCCUC
UGGCAUGUUGGAACAAUGUAGGUAAGGGAAGUCGGCAAGCCGGAUCCGUAACUUCGGGAU
AAGGAUUGGCUCUAAGGGCUGGGUCGGUCGGGCUGGGGCGCGAAGCGGGGCUGGGCGCGC
GCCGCGGCUGGACGAGGCGCCGCCGCCCCCCCCACGCCCGGGGCACCCCCCUCGCGGCCC
UCCCCCGCCCCACCCCGCGCGCGCCGCUCGCUCCCUCCCCGCCCCGCGCCCUCUCUCUCU
CUCUCUCCCCCGCUCCCCGUCCUCCCCCCUCCCCGGGGGAGCGCCGCGUGGGGGCGGCGG
CGGGGGGAGAAGGGUCGGGGCGGCAGGGGCCGGCGGCGGCCCGCCGCGGGGCCCCGGCGG
CGGGGGCACGGUCCCCCGCGAGGGGGGCCCGGGCACCCGGGGGGCCGGCGGCGGCGGCGA
CUCUGGACGCGAGCCGGGCCCUUCCCGUGGAUCGCCCCAGCUGCGGCGGGCGUCGCGGCC
GCCCCCGGGGAGCCCGGCGGGCGCCGGCGCGCCCCCCCCCCCACCCCACGUCUCGUCGCG
CGCGCGUCCGCUGGGGGCGGGGAGCGGUCGGGCGGCGGCGGUCGGCGGGCGGCGGGGCGG
GGCGGUUCGUCCCCCCGCCCUACCCCCCCGGCCCCGUCCGCCCCCCGUUCCCCCCUCCUC
CUCGGCGCGCGGCGGCGGCGGCGGCAGGCGGCGGAGGGGCCGCGGGCCGGUCCCCCCCGC
CGGGUCCGCCCCCGGGGCCGCGGUUCCGCGCGGCGCCUCGCCUCGGCCGGCGCCUAGCAG
CCGACUUAGAACUGGUGCGGACCAGGGGAAUCCGACUGUUUAAUUAAAACAAAGCAUCGC
GAAGGCCCGCGGCGGGUGUUGACGCGAUGUGAUUUCUGCCCAGUGCUCUGAAUGUCAAAG
UGAAGAAAUUCAAUGAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAG
CCAAAUGCCUCGUCAUCUAAUUAGUGACGCGCAUGAAXGGAUGAACGAGAUUCCCACUGU
CCCUACCUACUAUCCAGCGAAACCACAGCCAAGGGAACGGGCUUGGCGGAAUCAGCGGGG
AAAGAAGACCCUGUUGAGCUUGACUCUAGUCUGGCACGGUGAAGAGACAUGAGAGGUGUA
GAAUAAGUGGGAGGCCCCCGGCGCCCCCCCGGUGUCCCCGCGAGGGGCCCGGGGCGGGGU
CCGCCGGCCCUGCGGGCCGCCGGUGAAAUACCACUACUCUGAUCGUUUUUUCACUGACCC
GGUGAGGCGGGGGGGCGAGCCCCGAGGGGCUCUCGCUUCUGGCGCCAAGCGCCCGGCCGC
GCGCCGGCCGGGCGCGACCCGCUCCGGGGACAGUGCCAGGUGGGGAGUUUGACUGGGGCG
GUACACCUGUCAAACGGUAACGCAGGUGUCCUAAGGCGAGCUCAGGGAGGACAGAAACCU
CCCGUGGAGCAGAAGGGCAAAAGCUCGCUUGAUCUUGAUUUUCAGUACGAAUACAGACCG
UGAAAGCGGGGCCUCACGAUCCUUCUGACCUUUUGGGUUUUAAGCAGGAGGUGUCAGAAA
AGUUACCACAGGGAUAACUGGCUUGUGGCGGCCAAGCGUUCAUAGCGACGUCGCUUUUUG
AUCCUUCGAUGUCGGCUCUUCCUAUCAUUGUGAAGCAGAAUUCACCAAGCGUUGGAUUGU
UCACCCACUAAUAGGGAACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUAC
CCUACUGAUGAUGUGUUGUUGCCAUGGUAAUCCUGCUCAGUACGAGAGGAACCGCAGGUU
CAGACAUUUGGUGUAUGUGCUUGGCUGAGGAGCCAAUGGGGCGAAGCUACCAUCUGUGGG
AUUAUGACUGAACGCCUCUAAGUCAGAAUCCCGCCCAGGCGGAACGAUACGGCAGCGCCG
CGGAGCCUCGGUUGGCCUCGGAUAGCCGGUCCCCCGCCUGUCCCCGCCGGCGGGCCGCCC
CCCCCCUCCACGCGCCCCGCGCGCGCGGGAGGGCGCGUGCCCCGCCGCGCGCCGGGACCG
GGGUCCGGUGCGGAGUGCCCUUCGUCCUGGGAAACGGGGCGCGGCCGGAGAGGCGGCCGC
CCCCUCGCCCGUCACGCACCGCACGUUCGUGGGGAACCUGGCGCUAAACCAUUCGUAGAC
GACCUGCUUCUGGGUCGGGG
Sequence of entity 4 (E), FASTA
>8JDL_4 5S ribosomal RNA (chains E)
GUCUACGGCCAUACCACCCUGAACGCGCCCGAUCUCGUCUGAUCUCGGAAGCUAAGCAGG
GUCGGGCCUGGUUAGUACUUGGAUGGGAGACCGCCUGGGAAUACCGGGUGCUGUAGGCUU
Sequence of entity 5 (F), FASTA
>8JDL_5 5.8S ribosomal RNA (chains F)
CGACUCUUAGCGGUGGAUCACUCGGCUCGUGCGUCGAUGAAGAACGCAGCUAGCUGCGAG
AAUUAAUGUGAAUUGCAGGACACAUUGAUCAUCGACACUUCGAACGCACUUGCGGCCCCG
GGUUCCUCCCGGGGCUACGCCUGUCUGAGCGUCGCU
Sequence of entity 6 (G), FASTA
>8JDL_6 60S ribosomal protein L8 (chains G)
MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK
VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKP
GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL
KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA
RRTGRLRGTKTVQEKEN
Sequence of entity 7 (H), FASTA
>8JDL_7 60S ribosomal protein L3 (chains H)
MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV
DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK
NWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL
MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL
PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL
EKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKEEGA
Sequence of entity 8 (I), FASTA
>8JDL_8 60S ribosomal protein L4 (chains I)
MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH
QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK
RYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDI
KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL
APGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQR
ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLRVDKAAAAAAA
LQAKSDEKAAVAGKKPVVGKKGKKAAVGVKKQKKPLVGKKAAATKKPAPEKKPAEKKPTT
EEKKPAA
Sequence of entity 9 (J), FASTA
>8JDL_9 60S ribosomal protein L5 (chains J)
MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI
ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE
GQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRF
PGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNSVTPDMMEEMY
KKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERAAES
Sequence of entity 10 (K), FASTA
>8JDL_10 60S ribosomal protein L6 (chains K)
MAGEKVEKPDTKEKKPEAKKVDAGGKVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRS
AMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTED
VPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLV
LNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKY
EITEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNGIYPHKLVF
Sequence of entity 11 (L), FASTA
>8JDL_11 60S ribosomal protein L7 (chains L)
MEGVEEKKKEVPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKE
YRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNG
TFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLG
KYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQI
NRLIRRMN
Sequence of entity 12 (M), FASTA
>8JDL_12 60S ribosomal protein L7a (chains M)
MPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRY
IRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEK
KAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVP
YCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGN
VLGPKSVARIAKLEKAKAKELATKLG
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| MG | Magnesium ion | Mg | 539 |
| GAL | beta-D-galactopyranose | C6 H12 O6 | 1 |
| ZN | Zinc ion | Zn | 6 |
Primary citation
Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth. Zhao, X., Ma, D., Ishiguro, K. et al. Cell (2023) 186:5517. DOI 10.1016/j.cell.2023.10.026 · PubMed
Other PDB entries of the same protein (UniProt P62917 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 8A3D 1.67 Å, Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound
- 29IW 1.77 Å, Human monosomes with bound toxin NT-2, focus on 60S subunit. Cells treated with NT-2.
- 8QYX 1.78 Å, Human 60S ribosomal subunit
- 8QOI 1.9 Å, Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical…
- 9O3W 1.9 Å, Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain
- 8YOO 2.0 Å, Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline
- 9C3H 2.0 Å, Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.
- 29IZ 2.08 Å, Dormant 80S:eEF2:SERBP1:tRNA complex from human cells treated with toxin NT-2
- 9TV2 2.1 Å, 80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV
- 9I2D 2.19 Å, NMT1-NAC bound human RNC with 10 amino acid ARF1-linker
- 9PBE 2.19 Å, In situ human 80S ribosome (composite map)
- 29IX 2.2 Å, Human monosomes with bound toxin NT-2, focus on 60S subunit. NT-2 added to purified…
Browse structure collections
About this viewer
MolViewer shows 8JDL directly in your browser with nothing to install. Switch between cartoon, ball-and-stick, spacefill and surface views, color by chain, secondary structure or B-factor, measure distances, angles and dihedrals, and share or embed the view.