8JFW: RDGC/apo-CaM complex

Cryo-EM structure of RDGC/apo-CaM complex. Determined by electron microscopy at 3.64 Å resolution. Released 27 Nov 2024.

Method
Electron microscopy
Resolution
3.64 Å
Organism
Drosophila melanogaster
Chains
2
Atoms
6,076
Mol. weight
92.57 kDa
Ligands
FE, ZN
Released
27 Nov 2024

Explore 8JFW in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

8JFW contains 38 α-helices and 25 β-strands across 2 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 9 helices, 4 β-strands

ElementResiduesLengthSheet
α-helix9-179
β-strand28-2921
α-helix30-323
α-helix33-397
α-helix46-549
β-strand63-6421
α-helix66-7611
α-helix85-917
β-strand10212
α-helix103-11210
α-helix119-12810
β-strand13612
α-helix139-1479
Chain D: 29 helices, 21 β-strands
ElementResiduesLengthSheet
α-helix3-4543
α-helix47-5812
α-helix102-11312
α-helix119-1213
α-helix122-13615
β-strand142-14543
β-strand153-15644
α-helix163-17311
β-strand17715
β-strand18015
β-strand182-18434
α-helix195-20814
β-strand213-21534
α-helix223-2264
α-helix231-2388
α-helix243-25513
β-strand260-26343
β-strand267-26933
α-helix280-2834
α-helix288-2903
α-helix304-3052
α-helix307-31812
β-strand320-32126
β-strand327-32936
β-strand337-33936
α-helix341-35111
β-strand356-35833
β-strand367-37043
β-strand375-37843
β-strand392-39764
β-strand403-41084
α-helix412-4154
α-helix420-43920
α-helix440-4423
α-helix443-45210
β-strand460-46237
α-helix463-47412
α-helix480-4834
α-helix484-4874
β-strand495-49737
α-helix498-5058
α-helix508-5169
α-helix523-5264
α-helix528-53710
β-strand54518
α-helix548-56114
α-helix570-5789
β-strand58518
α-helix588-61124
β-strand651-65664

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
AT15141pAprotein149Drosophila melanogasterC6SUZ2 (AlphaFold model)
Serine/threonine-protein phosphatase rdgCDprotein661Drosophila melanogasterP40421 (AlphaFold model)
Sequence of entity 1 (A), FASTA
>8JFW_1 AT15141p (chains A)
MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG
NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDE
EVDEMIREADIDGDGQVNYEEFVTMMTSK
Sequence of entity 2 (D), FASTA
>8JFW_2 Serine/threonine-protein phosphatase rdgC (chains D)
MDENAIRAAIFIQKWYRRHQARREMQRRCNWQIFQNLEYASEQDQAELYKFFNDLIKHMP
QAAGRKNQYQGSAHVSVLDDKDDLVEEFGDIVNAKIELPIRKNHIDLLIDVFRKKRGNRL
HPKYVALILREAAKSLKQLPNISPVSTAVSQQVTVCGDLHGKLDDLLVVLHKNGLPSSSN
PYVFNGDFVDRGKRGLEVLLLLLSLYLAFPNAVFLNRGNHEDSVMNARYGFIREVESKYP
RNHKRILAFIDEVYRWLPLGSVLNSRVLIVHGGFSDSTSLDLIKSIDRGKYVSILRPPLT
DGEPLDKTEWQQIFDIMWSDPQATMGCVPNTLRGAGVWFGPDVTDNFLQRHRLSYVIRSH
ECKPNGHEFMHDNKIITIFSASNYYAIGSNKGAYIRLNNQLMPHFVQYISAASQTKRLSF
KQRMGIVESSALKELAVRMRDHRDELEDEFRKYDPKDSGYISISHWCKVMENVTKLGLPW
RLLRDKLAPGTDSQKVNYNRTLDLLDTDVILEAEADGMSVMDALYANKASLVAIFNIIDA
DNSGEITLDEFETAIDLLVAHMPGAYSKAEMLEKCRMMDLNGDGKVDLNEFLEAFRLSDL
HRKEQQDENIRRRSTGRPSVAKTATDPVTLLADKISKNTLVVEHDIDPTDCESKVIDPKK
S

Ligands and cofactors

IDNameFormulaCopies
FEFE (III) ionFe1
ZNZinc ionZn1

Primary citation

Cryo-EM structure of RDGC/apo-CaM complex. Liu, Z.M., Liu, W., Wu, C. et al. To be published.

Other PDB entries of the same protein (UniProt C6SUZ2 (AlphaFold model), which also has an AlphaFold model), best resolution first:

Browse structure collections

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